Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005112

Physical Location & Seq

Genomic Coordinates Forward (+)

39156670 .. 39157864

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGAAGGGTGACGACGCAGTGAGGAAGAAGCTAAACAAGGCCAACAGGAAAAAGCTCCGCAAGGATGACCGTTCTTCCTCCTCCGTTACCGCTCGCGATGCCTCCATTATGGCAGCCAAAAAGCGCCGCCAGTCCGGCAAACGCCGCAAATGCCAGGGTATGTGCTTTAGCCTTAATACGCTAGACGATCCCTTCAATGACAGGAATGGTAGAAAGGATTTTGAGAAAGTAACTAAGAAAATCATGCTTCCGCATAAGGATGAGAGTGAGTTTCTCAGGGAAAAATGTAAAGAAATCATTAGAAAGAATGAAAAGGCAATGAATCCTGGGATGAAGAATATGAAGGTTACAAGTTTGAAGAATGAGCAGAAGAAATCACTCCCGTTCACATCTATTGATAGCGCGGTGCAGAGAAGCAGAATTGACTCAGTTAGGACAAAGACTCAGCTGAGTGGGAAACAGGAACAGGCCTGCGAAAACTCAGATTGTCCATCCAAGTATCTGATTCGGTGTTTGAATGAAATTGAGAATTCACTGCATTGTGATGGTACCTACAGTAATGAGGATGACAAGCCATTATTTGTTAGTACCTGGGGAGTTGAGTTTTGGAAATGTTATTCAGCTGGAAAGGATATATTAGAGACAAGTGGAACTTCTTCAACAATAGAGCAAATTGCATGGATTGTTTCCAGTGCTGCTGATTCAATTTCTAGAAAGGATGAAGAAGGTCCATCAGCCACCAGTCCATTAGGAATCTACCTCTTTGTAATTACGAAGGTCCAGTATGATAACCATCAAAAGGGTCACCGCCACAACCGCCGTCTCCTCCATAACCACCGCCACCAAGAAAATCAAGACCTCCGCCGTCTCTCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD

Protein Analysis

294

Amino Acids

33.58

Weight (kDa)

9.62

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28600
fragaria_vesca	FvH4_7g06330
malus_domestica	MD02G1244900.v1.1 MD07G1072000.v1.1
prunus_persica	Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1
pyrus_communis	pycom02g21080 pycom07g05500
rosa_chinensis	RchiOBHm_Chr1g0334181
rosa_laevigata	RLG00000029468 RLG00000029472 RLG00000029474
rosa_multiflora	Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970
rosa_rugosa	Rorug01G0113200
rosa_samantha	Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300
rosa_wichuraiana	Rw0G018010 Rw1G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	95
AccII	CGCG	2 cut(s)	99, 407
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	2 cut(s)	553, 592
AfiI	CCNNNNNNNGG	1 cut(s)	802
AgsI	TTSAA	5 cut(s)	199, 361, 520, 663, 708
AjnI	CCWGG	3 cut(s)	156, 328, 593
AluBI	AGCT	4 cut(s)	34, 58, 451, 626
AluI	AGCT	4 cut(s)	34, 58, 451, 626
Alw26I	GTCTC	3 cut(s)	638, 830, 875
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	42, 471
ApeKI	GCWGC	2 cut(s)	116, 698
ApoI	RAATTY	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	658
Asp718I	GGTACC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	129, 407
AspS9I	GGNCC	2 cut(s)	731, 781
AsuHPI	GGTGA	3 cut(s)	23, 800, 867
AvaII	GGWCC	2 cut(s)	731, 781
BanI	GGYRCC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	128, 685
BccI	CCATC	4 cut(s)	502, 542, 742, 804
BceAI	ACGGC	2 cut(s)	807, 852
BciT130I	CCWGG	3 cut(s)	158, 330, 595
BcoDI	GTCTC	3 cut(s)	638, 830, 875
BfaI	CTAG	2 cut(s)	185, 714
BfmI	CTRYAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	4 cut(s)	117, 130, 148, 699
BlsI	GCNGC	4 cut(s)	118, 131, 149, 700
Bme1390I	CCNGG	3 cut(s)	158, 330, 595
Bme18I	GGWCC	2 cut(s)	731, 781
BmgT120I	GGNCC	2 cut(s)	731, 781
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	3 cut(s)	158, 330, 595
BmsI	GCATC	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	157, 329, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
Bse1I	ACTGG	4 cut(s)	133, 693, 744, 784
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	3 cut(s)	158, 330, 595
BseDI	CCNNGG	3 cut(s)	157, 329, 594
BseGI	GGATG	6 cut(s)	73, 268, 339, 494, 574, 727
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	5 cut(s)	292, 443, 444, 461, 498
BseNI	ACTGG	4 cut(s)	133, 693, 744, 784
BseRI	GAGGAG	2 cut(s)	73, 818
BseXI	GCAGC	2 cut(s)	128, 685
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	99, 407
BshFI	GGCC	2 cut(s)	44, 473
BshNI	GGYRCC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	3 cut(s)	638, 830, 875
BsmBI	CGTCTC	2 cut(s)	830, 875
BsnI	GGCC	2 cut(s)	44, 473
Bsp143I	GATC	1 cut(s)	190
Bsp68I	TCGCGA	1 cut(s)	99
BspANI	GGCC	2 cut(s)	44, 473
BspCNI	CTCAG	5 cut(s)	291, 443, 444, 460, 497
BspFNI	CGCG	2 cut(s)	99, 407
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	4 cut(s)	133, 693, 744, 784
BssECI	CCNNGG	3 cut(s)	157, 329, 594
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	3 cut(s)	158, 330, 595
Bst4CI	ACNGT	3 cut(s)	74, 560, 879
BstC8I	GCNNGC	2 cut(s)	97, 475
BstDEI	CTNAG	6 cut(s)	237, 278, 430, 447, 452, 484
BstEII	GGTNACC	1 cut(s)	806
BstF5I	GGATG	6 cut(s)	73, 268, 339, 494, 574, 727
BstFNI	CGCG	2 cut(s)	99, 407
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 407
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	3 cut(s)	638, 830, 875
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 138, 147, 153, 819
BstNI	CCWGG	3 cut(s)	158, 330, 595
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	3 cut(s)	156, 328, 593
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	2 cut(s)	99, 407
BstV1I	GCAGC	2 cut(s)	128, 685
BsuRI	GGCC	2 cut(s)	44, 473
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	6 cut(s)	73, 268, 339, 494, 574, 727
BtsI	GCAGTG	2 cut(s)	27, 536
BtsIMutI	CAGTG	3 cut(s)	27, 536, 700
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	97, 475
CfoI	GCGC	2 cut(s)	129, 407
Cfr13I	GGNCC	2 cut(s)	731, 781
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	552, 591
CviAII	CATG	2 cut(s)	247, 681
CviQI	GTAC	2 cut(s)	552, 591
DdeI	CTNAG	6 cut(s)	237, 278, 430, 447, 452, 484
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	854
Eco147I	AGGCCT	1 cut(s)	473
Eco47I	GGWCC	2 cut(s)	731, 781
Eco91I	GGTNACC	1 cut(s)	806
EcoO65I	GGTNACC	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	156, 328, 593
Esp3I	CGTCTC	2 cut(s)	830, 875
FaeI	CATG	2 cut(s)	250, 684
FaiI	YATR	9 cut(s)	113, 164, 248, 258, 344, 638, 682, 789, 834
FalI	AAGNNNNNCTT	2 cut(s)	640, 672
FatI	CATG	2 cut(s)	246, 680
Fnu4HI	GCNGC	4 cut(s)	117, 130, 148, 699
FokI	GGATG	6 cut(s)	80, 275, 346, 481, 581, 734
Fsp4HI	GCNGC	4 cut(s)	117, 130, 148, 699
FspBI	CTAG	2 cut(s)	185, 714
GlaI	GCGC	2 cut(s)	128, 406
GluI	GCNGC	4 cut(s)	117, 130, 148, 699
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	44, 473
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	129, 407
Hin1II	CATG	2 cut(s)	250, 684
Hin6I	GCGC	2 cut(s)	127, 405
HinP1I	GCGC	2 cut(s)	127, 405
HinfI	GANTC	6 cut(s)	325, 428, 445, 508, 704, 756
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	3 cut(s)	23, 800, 867
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	2 cut(s)	487, 507
Hpy188III	TCNNGA	3 cut(s)	98, 714, 857
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	205, 340, 722, 772
HpyCH4III	ACNGT	3 cut(s)	74, 560, 879
HpyCH4V	TGCA	3 cut(s)	412, 541, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 138, 147, 153, 819
HpyF3I	CTNAG	6 cut(s)	237, 278, 430, 447, 452, 484
Hsp92II	CATG	2 cut(s)	250, 684
HspAI	GCGC	2 cut(s)	127, 405
KpnI	GGTACC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	128, 685
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	185, 714
MaeIII	GTNAC	5 cut(s)	11, 88, 232, 349, 806
MalI	GATC	1 cut(s)	192
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	1 cut(s)	190
MboII	GAAGA	7 cut(s)	40, 69, 349, 373, 385, 651, 737
MluCI	AATT	6 cut(s)	423, 525, 532, 675, 708, 771
MlyI	GAGTC	2 cut(s)	422, 439
MnlI	CCTC	8 cut(s)	18, 91, 94, 115, 559, 773, 839, 872
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	261, 546
MspA1I	CMGCKG	2 cut(s)	451, 626
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	158, 330, 595
MvaI	CCWGG	3 cut(s)	158, 330, 595
MvnI	CGCG	2 cut(s)	99, 407
MwoI	GCNNNNNNNGC	5 cut(s)	101, 138, 147, 153, 819
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	250, 684
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	11, 806
NruI	TCGCGA	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	4 cut(s)	325, 508, 704, 756
PkrI	GCNGC	4 cut(s)	118, 131, 149, 700
PleI	GAGTC	2 cut(s)	422, 439
PpsI	GAGTC	2 cut(s)	422, 439
Psp6I	CCWGG	3 cut(s)	156, 328, 593
PspEI	GGTNACC	1 cut(s)	806
PspGI	CCWGG	3 cut(s)	156, 328, 593
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	731, 781
PvuII	CAGCTG	2 cut(s)	451, 626
RruI	TCGCGA	1 cut(s)	99
RsaI	GTAC	2 cut(s)	553, 592
RsaNI	GTAC	2 cut(s)	552, 591
RseI	CAYNNNNRTG	2 cut(s)	261, 546
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	4 cut(s)	117, 130, 148, 699
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	731, 781
SchI	GAGTC	2 cut(s)	422, 439
ScrFI	CCNGG	3 cut(s)	158, 330, 595
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	556
SinI	GGWCC	2 cut(s)	731, 781
SmiMI	CAYNNNNRTG	2 cut(s)	261, 546
Sse9I	AATT	6 cut(s)	423, 525, 532, 675, 708, 771
SseBI	AGGCCT	1 cut(s)	473
SspMI	CTAG	2 cut(s)	185, 714
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	156, 328, 593
TaaI	ACNGT	3 cut(s)	74, 560, 879
TasI	AATT	6 cut(s)	423, 525, 532, 675, 708, 771
TauI	GCSGC	2 cut(s)	132, 150
TfiI	GAWTC	4 cut(s)	325, 508, 704, 756
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	3 cut(s)	27, 543, 700
TseFI	GTSAC	2 cut(s)	11, 806
TseI	GCWGC	2 cut(s)	116, 698
Tsp45I	GTSAC	2 cut(s)	11, 806
TspDTI	ATGAA	6 cut(s)	327, 338, 350, 359, 537, 738
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	3 cut(s)	27, 543, 700
VpaK11BI	GGWCC	2 cut(s)	731, 781
XapI	RAATTY	1 cut(s)	532
XbaI	TCTAGA	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	658
XspI	CTAG	2 cut(s)	185, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.