Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005112

Physical Location & Seq

Genomic Coordinates Forward (+)

41918187 .. 41919348

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGATGGGATGTGAAGCCTCATAGAGCTCAAAAAGGATACAGACCCAAGGTGTCAGCTGGCAAAGTTCAAGCTTGCACTGGCAACAAAATTTATTGGACAGTGGCCGTCAAGTTAAGTTTTCACAAGATCATTGAGGACAACTTCAAAACACTAAAGGGCTGCTATGATGAGGAAGCAACAAGGTCCTACACCGACGAGGCCCTCACACTAGTTATTCTTAGATGGATGTTCAACCTTACAGTTCATATACTCCCTCATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

88

Amino Acids

10.19

Weight (kDa)

9.2

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28600
fragaria_vesca	FvH4_7g06330
malus_domestica	MD02G1244900.v1.1 MD07G1072000.v1.1
prunus_persica	Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1
pyrus_communis	pycom02g21080 pycom07g05500
rosa_chinensis	RchiOBHm_Chr1g0334181
rosa_laevigata	RLG00000029468 RLG00000029472 RLG00000029474
rosa_multiflora	Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970
rosa_rugosa	Rorug01G0113200
rosa_samantha	Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300
rosa_wichuraiana	Rw0G018010 Rw1G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	71, 148, 235
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	3 cut(s)	29, 59, 74
AluI	AGCT	3 cut(s)	29, 59, 74
Alw21I	GWGCWC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	105, 201
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	186, 202
AvaII	GGWCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	32
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	186, 202
BsaJI	CCNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	11, 16, 234
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	107, 203
BsiHKAI	GWGCWC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	107, 203
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	107, 203
BspHI	TCATGA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	103, 244
BstC8I	GCNNGC	2 cut(s)	61, 76
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	11, 16, 234
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	107, 203
BtsCI	GGATG	3 cut(s)	11, 16, 234
BtsIMutI	CAGTG	2 cut(s)	78, 108
Cac8I	GCNNGC	2 cut(s)	61, 76
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	186, 202
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	19, 29, 59, 74, 107, 162, 203
CviKI_1	RGCY	7 cut(s)	19, 29, 59, 74, 107, 162, 203
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	186, 202
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	263
FaiI	YATR	5 cut(s)	24, 168, 249, 251, 261
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	3 cut(s)	18, 23, 241
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	107, 203
Hin1II	CATG	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	103, 244
HpyCH4V	TGCA	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	2 cut(s)	45, 66
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	212
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	6 cut(s)	30, 130, 166, 193, 215, 267
MseI	TTAA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	59
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	263
PagI	TCATGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	186, 202
PspPPI	RGGWCCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	186, 202
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	31, 54, 61, 76, 188, 240
SinI	GGWCC	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	103, 244
TasI	AATT	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	85, 108
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	2 cut(s)	85, 108
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	1 cut(s)	90
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.