ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28600 |
| fragaria_vesca | FvH4_7g06330 |
| malus_domestica | MD02G1244900.v1.1 MD07G1072000.v1.1 |
| prunus_persica | Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 |
| pyrus_communis | pycom02g21080 pycom07g05500 |
| rosa_chinensis | RchiOBHm_Chr1g0334181 |
| rosa_laevigata | RLG00000029468 RLG00000029472 RLG00000029474 |
| rosa_multiflora | Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970 |
| rosa_rugosa | Rorug01G0113200 |
| rosa_samantha | Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300 |
| rosa_wichuraiana | Rw0G018010 Rw1G011410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 551 |
| AccB1I | GGYRCC | 1 cut(s) | 551 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1054 |
| AccBSI | CCGCTC | 1 cut(s) | 95 |
| AccI | GTMKAC | 1 cut(s) | 844 |
| AccII | CGCG | 2 cut(s) | 99, 407 |
| AciI | CCGC | 6 cut(s) | 61, 93, 117, 130, 148, 407 |
| AclWI | GGATC | 2 cut(s) | 185, 198 |
| AcsI | RAATTY | 3 cut(s) | 532, 1050, 1248 |
| AcuI | CTGAAG | 2 cut(s) | 356, 905 |
| AfaI | GTAC | 3 cut(s) | 553, 592, 1300 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1054 |
| AflIII | ACRYGT | 1 cut(s) | 1011 |
| AgsI | TTSAA | 9 cut(s) | 199, 361, 520, 708, 817, 878, 1080, 1204, 1313 |
| AhlI | ACTAGT | 1 cut(s) | 1123 |
| AjnI | CCWGG | 3 cut(s) | 156, 593, 850 |
| AleI | CACNNNNGTG | 1 cut(s) | 852 |
| AluBI | AGCT | 6 cut(s) | 34, 58, 451, 626, 740, 785 |
| AluI | AGCT | 6 cut(s) | 34, 58, 451, 626, 740, 785 |
| Alw26I | GTCTC | 3 cut(s) | 638, 919, 1171 |
| AlwI | GGATC | 2 cut(s) | 185, 198 |
| Ama87I | CYCGRG | 1 cut(s) | 329 |
| AoxI | GGCC | 4 cut(s) | 42, 471, 1170, 1341 |
| ApeKI | GCWGC | 4 cut(s) | 698, 740, 785, 1130 |
| ApoI | RAATTY | 3 cut(s) | 532, 1050, 1248 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1042, 1074 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 658 |
| Asp718I | GGTACC | 1 cut(s) | 551 |
| AspLEI | GCGC | 3 cut(s) | 129, 407, 1135 |
| AspS9I | GGNCC | 3 cut(s) | 731, 1342, 1405 |
| AsuC2I | CCSGG | 2 cut(s) | 330, 331 |
| AsuHPI | GGTGA | 4 cut(s) | 23, 860, 967, 1280 |
| AsuII | TTCGAA | 1 cut(s) | 1324 |
| AvaI | CYCGRG | 1 cut(s) | 329 |
| AvaII | GGWCC | 2 cut(s) | 731, 1405 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BanI | GGYRCC | 1 cut(s) | 551 |
| BbsI | GAAGAC | 1 cut(s) | 1008 |
| BbvI | GCAGC | 4 cut(s) | 685, 727, 772, 1117 |
| BccI | CCATC | 3 cut(s) | 542, 742, 1163 |
| BciT130I | CCWGG | 3 cut(s) | 158, 595, 852 |
| BcnI | CCSGG | 2 cut(s) | 330, 331 |
| BcoDI | GTCTC | 3 cut(s) | 638, 919, 1171 |
| BcuI | ACTAGT | 1 cut(s) | 1123 |
| BfaI | CTAG | 4 cut(s) | 185, 714, 939, 1124 |
| BfmI | CTRYAG | 2 cut(s) | 556, 1221 |
| BfoI | RGCGCY | 1 cut(s) | 130 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 138 |
| BisI | GCNGC | 7 cut(s) | 117, 130, 148, 699, 741, 786, 1131 |
| BlsI | GCNGC | 7 cut(s) | 118, 131, 149, 700, 742, 787, 1132 |
| Bme1390I | CCNGG | 5 cut(s) | 158, 330, 331, 595, 852 |
| Bme18I | GGWCC | 2 cut(s) | 731, 1405 |
| BmeT110I | CYCGRG | 1 cut(s) | 329 |
| BmgT120I | GGNCC | 3 cut(s) | 731, 1342, 1405 |
| BmiI | GGNNCC | 3 cut(s) | 192, 553, 897 |
| BmrFI | CCNGG | 5 cut(s) | 158, 330, 331, 595, 852 |
| BmsI | GCATC | 4 cut(s) | 779, 1002, 1228, 1380 |
| BpiI | GAAGAC | 1 cut(s) | 1008 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1071 |
| Bpu14I | TTCGAA | 1 cut(s) | 1324 |
| BpuEI | CTTGAG | 1 cut(s) | 1127 |
| BpuMI | CCSGG | 2 cut(s) | 330, 331 |
| BsaJI | CCNNGG | 5 cut(s) | 157, 329, 594, 789, 850 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 887, 917 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1054 |
| Bse1I | ACTGG | 3 cut(s) | 693, 744, 978 |
| BseBI | CCWGG | 3 cut(s) | 158, 595, 852 |
| BseDI | CCNNGG | 5 cut(s) | 157, 329, 594, 789, 850 |
| BseGI | GGATG | 3 cut(s) | 73, 268, 727 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1054 |
| BseMII | CTCAG | 9 cut(s) | 292, 443, 444, 461, 498, 788, 891, 912, 1085 |
| BseNI | ACTGG | 3 cut(s) | 693, 744, 978 |
| BseRI | GAGGAG | 2 cut(s) | 73, 581 |
| BseXI | GCAGC | 4 cut(s) | 685, 727, 772, 1117 |
| BsgI | GTGCAG | 1 cut(s) | 431 |
| Bsh1236I | CGCG | 2 cut(s) | 99, 407 |
| BshFI | GGCC | 4 cut(s) | 44, 473, 1172, 1343 |
| BshNI | GGYRCC | 1 cut(s) | 551 |
| BsiHKCI | CYCGRG | 1 cut(s) | 329 |
| BsiSI | CCGG | 3 cut(s) | 138, 330, 1403 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1054 |
| BsmAI | GTCTC | 3 cut(s) | 638, 919, 1171 |
| BsnI | GGCC | 4 cut(s) | 44, 473, 1172, 1343 |
| BsoBI | CYCGRG | 1 cut(s) | 329 |
| Bsp119I | TTCGAA | 1 cut(s) | 1324 |
| Bsp143I | GATC | 4 cut(s) | 190, 865, 909, 941 |
| BspACI | CCGC | 6 cut(s) | 61, 93, 117, 130, 148, 407 |
| BspANI | GGCC | 4 cut(s) | 44, 473, 1172, 1343 |
| BspCNI | CTCAG | 9 cut(s) | 291, 443, 444, 460, 497, 787, 892, 913, 1084 |
| BspFNI | CGCG | 2 cut(s) | 99, 407 |
| BspLI | GGNNCC | 3 cut(s) | 192, 553, 897 |
| BspMAI | CTGCAG | 1 cut(s) | 1225 |
| BspPI | GGATC | 2 cut(s) | 185, 198 |
| BspT104I | TTCGAA | 1 cut(s) | 1324 |
| BspT107I | GGYRCC | 1 cut(s) | 551 |
| BsrBI | CCGCTC | 1 cut(s) | 95 |
| BsrI | ACTGG | 3 cut(s) | 693, 744, 978 |
| BssECI | CCNNGG | 5 cut(s) | 157, 329, 594, 789, 850 |
| BssMI | GATC | 4 cut(s) | 190, 865, 909, 941 |
| BssNAI | GTATAC | 1 cut(s) | 845 |
| BssT1I | CCWWGG | 1 cut(s) | 789 |
| Bst1107I | GTATAC | 1 cut(s) | 845 |
| Bst2UI | CCWGG | 3 cut(s) | 158, 595, 852 |
| Bst4CI | ACNGT | 5 cut(s) | 74, 560, 838, 1193, 1354 |
| Bst6I | CTCTTC | 2 cut(s) | 462, 881 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1399 |
| BstBI | TTCGAA | 1 cut(s) | 1324 |
| BstC8I | GCNNGC | 4 cut(s) | 97, 475, 991, 1221 |
| BstF5I | GGATG | 3 cut(s) | 73, 268, 727 |
| BstFNI | CGCG | 2 cut(s) | 99, 407 |
| BstH2I | RGCGCY | 1 cut(s) | 130 |
| BstHHI | GCGC | 3 cut(s) | 129, 407, 1135 |
| BstKTI | GATC | 4 cut(s) | 193, 868, 912, 944 |
| BstMAI | GTCTC | 3 cut(s) | 638, 919, 1171 |
| BstMBI | GATC | 4 cut(s) | 190, 865, 909, 941 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 101, 138, 147, 153, 1399 |
| BstNI | CCWGG | 3 cut(s) | 158, 595, 852 |
| BstNSI | RCATGY | 2 cut(s) | 993, 1015 |
| BstSCI | CCNGG | 5 cut(s) | 156, 328, 329, 593, 850 |
| BstSFI | CTRYAG | 2 cut(s) | 556, 1221 |
| BstUI | CGCG | 2 cut(s) | 99, 407 |
| BstV1I | GCAGC | 4 cut(s) | 685, 727, 772, 1117 |
| BstV2I | GAAGAC | 1 cut(s) | 1008 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1264 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BstZ17I | GTATAC | 1 cut(s) | 845 |
| BsuRI | GGCC | 4 cut(s) | 44, 473, 1172, 1343 |
| BtsCI | GGATG | 3 cut(s) | 73, 268, 727 |
| BtsI | GCAGTG | 3 cut(s) | 27, 536, 1230 |
| BtsIMutI | CAGTG | 8 cut(s) | 27, 536, 700, 807, 843, 1019, 1230, 1350 |
| Cac8I | GCNNGC | 4 cut(s) | 97, 475, 991, 1221 |
| CfoI | GCGC | 3 cut(s) | 129, 407, 1135 |
| Cfr13I | GGNCC | 3 cut(s) | 731, 1342, 1405 |
| Cfr9I | CCCGGG | 1 cut(s) | 329 |
| CseI | GACGC | 2 cut(s) | 26, 88 |
| Csp6I | GTAC | 3 cut(s) | 552, 591, 1299 |
| CviAII | CATG | 6 cut(s) | 247, 681, 990, 1012, 1231, 1339 |
| CviQI | GTAC | 3 cut(s) | 552, 591, 1299 |
| DpnI | GATC | 4 cut(s) | 192, 867, 911, 943 |
| DpnII | GATC | 4 cut(s) | 190, 865, 909, 941 |
| Eam1104I | CTCTTC | 2 cut(s) | 462, 881 |
| EarI | CTCTTC | 2 cut(s) | 462, 881 |
| Eco130I | CCWWGG | 1 cut(s) | 789 |
| Eco147I | AGGCCT | 1 cut(s) | 473 |
| Eco47I | GGWCC | 2 cut(s) | 731, 1405 |
| Eco57I | CTGAAG | 2 cut(s) | 356, 905 |
| Eco88I | CYCGRG | 1 cut(s) | 329 |
| EcoRI | GAATTC | 1 cut(s) | 532 |
| EcoRII | CCWGG | 3 cut(s) | 156, 593, 850 |
| EcoT14I | CCWWGG | 1 cut(s) | 789 |
| EcoT22I | ATGCAT | 1 cut(s) | 995 |
| ErhI | CCWWGG | 1 cut(s) | 789 |
| FaeI | CATG | 6 cut(s) | 250, 684, 993, 1015, 1234, 1342 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 234, 266, 640, 672 |
| FatI | CATG | 6 cut(s) | 246, 680, 989, 1011, 1230, 1338 |
| FblI | GTMKAC | 1 cut(s) | 844 |
| Fnu4HI | GCNGC | 7 cut(s) | 117, 130, 148, 699, 741, 786, 1131 |
| FokI | GGATG | 3 cut(s) | 80, 275, 734 |
| Fsp4HI | GCNGC | 7 cut(s) | 117, 130, 148, 699, 741, 786, 1131 |
| FspBI | CTAG | 4 cut(s) | 185, 714, 939, 1124 |
| GlaI | GCGC | 3 cut(s) | 128, 406, 1134 |
| GluI | GCNGC | 7 cut(s) | 117, 130, 148, 699, 741, 786, 1131 |
| HaeII | RGCGCY | 1 cut(s) | 130 |
| HaeIII | GGCC | 4 cut(s) | 44, 473, 1172, 1343 |
| HapII | CCGG | 3 cut(s) | 138, 330, 1403 |
| HgaI | GACGC | 2 cut(s) | 26, 88 |
| HhaI | GCGC | 3 cut(s) | 129, 407, 1135 |
| Hin1II | CATG | 6 cut(s) | 250, 684, 993, 1015, 1234, 1342 |
| Hin6I | GCGC | 3 cut(s) | 127, 405, 1133 |
| HinP1I | GCGC | 3 cut(s) | 127, 405, 1133 |
| HincII | GTYRAC | 1 cut(s) | 1061 |
| HindII | GTYRAC | 1 cut(s) | 1061 |
| HpaII | CCGG | 3 cut(s) | 138, 330, 1403 |
| HphI | GGTGA | 4 cut(s) | 23, 860, 967, 1280 |
| Hpy166II | GTNNAC | 4 cut(s) | 390, 845, 1009, 1061 |
| Hpy188I | TCNGA | 6 cut(s) | 487, 507, 885, 895, 963, 1180 |
| Hpy188III | TCNNGA | 2 cut(s) | 714, 776 |
| Hpy8I | GTNNAC | 4 cut(s) | 390, 845, 1009, 1061 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 104 |
| HpyAV | CCTTC | 6 cut(s) | 185, 205, 340, 722, 811, 1198 |
| HpyCH4III | ACNGT | 5 cut(s) | 74, 560, 838, 1193, 1354 |
| HpyCH4IV | ACGT | 1 cut(s) | 392 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 101, 138, 147, 153, 1399 |
| HpySE526I | ACGT | 1 cut(s) | 392 |
| Hsp92II | CATG | 6 cut(s) | 250, 684, 993, 1015, 1234, 1342 |
| HspAI | GCGC | 3 cut(s) | 127, 405, 1133 |
| KpnI | GGTACC | 1 cut(s) | 555 |
| Kzo9I | GATC | 4 cut(s) | 190, 865, 909, 941 |
| LmnI | GCTCC | 2 cut(s) | 63, 895 |
| Lsp1109I | GCAGC | 4 cut(s) | 685, 727, 772, 1117 |
| LweI | GCATC | 4 cut(s) | 779, 1002, 1228, 1380 |
| MaeI | CTAG | 4 cut(s) | 185, 714, 939, 1124 |
| MaeII | ACGT | 1 cut(s) | 392 |
| MaeIII | GTNAC | 5 cut(s) | 11, 88, 349, 973, 1346 |
| MalI | GATC | 4 cut(s) | 192, 867, 911, 943 |
| MbiI | CCGCTC | 1 cut(s) | 95 |
| MboI | GATC | 4 cut(s) | 190, 865, 909, 941 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MluCI | AATT | 7 cut(s) | 423, 525, 532, 675, 708, 1050, 1248 |
| MlyI | GAGTC | 3 cut(s) | 422, 439, 921 |
| MnlI | CCTC | 9 cut(s) | 18, 91, 94, 115, 181, 463, 559, 562, 1340 |
| Mph1103I | ATGCAT | 1 cut(s) | 995 |
| MroXI | GAANNNNTTC | 1 cut(s) | 658 |
| MslI | CAYNNNNRTG | 3 cut(s) | 261, 852, 1337 |
| MspA1I | CMGCKG | 3 cut(s) | 451, 626, 740 |
| MspI | CCGG | 3 cut(s) | 138, 330, 1403 |
| MspR9I | CCNGG | 5 cut(s) | 158, 330, 331, 595, 852 |
| MvaI | CCWGG | 3 cut(s) | 158, 595, 852 |
| MvnI | CGCG | 2 cut(s) | 99, 407 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 101, 138, 147, 153, 1399 |
| NciI | CCSGG | 2 cut(s) | 330, 331 |
| NdeII | GATC | 4 cut(s) | 190, 865, 909, 941 |
| NlaIII | CATG | 6 cut(s) | 250, 684, 993, 1015, 1234, 1342 |
| NlaIV | GGNNCC | 3 cut(s) | 192, 553, 897 |
| NmeAIII | GCCGAG | 1 cut(s) | 1148 |
| NmuCI | GTSAC | 2 cut(s) | 11, 973 |
| NsiI | ATGCAT | 1 cut(s) | 995 |
| NspI | RCATGY | 2 cut(s) | 993, 1015 |
| NspV | TTCGAA | 1 cut(s) | 1324 |
| OliI | CACNNNNGTG | 1 cut(s) | 852 |
| PaeI | GCATGC | 1 cut(s) | 993 |
| PceI | AGGCCT | 1 cut(s) | 473 |
| PciI | ACATGT | 1 cut(s) | 1011 |
| PdmI | GAANNNNTTC | 1 cut(s) | 658 |
| PfeI | GAWTC | 7 cut(s) | 325, 508, 704, 874, 968, 1114, 1326 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1054 |
| PkrI | GCNGC | 7 cut(s) | 118, 131, 149, 700, 742, 787, 1132 |
| PleI | GAGTC | 3 cut(s) | 422, 439, 921 |
| PpsI | GAGTC | 3 cut(s) | 422, 439, 921 |
| PscI | ACATGT | 1 cut(s) | 1011 |
| Psp6I | CCWGG | 3 cut(s) | 156, 593, 850 |
| PspGI | CCWGG | 3 cut(s) | 156, 593, 850 |
| PspN4I | GGNNCC | 3 cut(s) | 192, 553, 897 |
| PspPI | GGNCC | 3 cut(s) | 731, 1342, 1405 |
| PstI | CTGCAG | 1 cut(s) | 1225 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| PvuII | CAGCTG | 3 cut(s) | 451, 626, 740 |
| RsaI | GTAC | 3 cut(s) | 553, 592, 1300 |
| RsaNI | GTAC | 3 cut(s) | 552, 591, 1299 |
| RseI | CAYNNNNRTG | 3 cut(s) | 261, 852, 1337 |
| SatI | GCNGC | 7 cut(s) | 117, 130, 148, 699, 741, 786, 1131 |
| Sau3AI | GATC | 4 cut(s) | 190, 865, 909, 941 |
| Sau96I | GGNCC | 3 cut(s) | 731, 1342, 1405 |
| SchI | GAGTC | 3 cut(s) | 422, 439, 921 |
| ScrFI | CCNGG | 5 cut(s) | 158, 330, 331, 595, 852 |
| SfaNI | GCATC | 4 cut(s) | 779, 1002, 1228, 1380 |
| SfcI | CTRYAG | 2 cut(s) | 556, 1221 |
| SfuI | TTCGAA | 1 cut(s) | 1324 |
| SinI | GGWCC | 2 cut(s) | 731, 1405 |
| SmaI | CCCGGG | 1 cut(s) | 331 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 261, 852, 1337 |
| SmlI | CTYRAG | 1 cut(s) | 1142 |
| SmoI | CTYRAG | 1 cut(s) | 1142 |
| SpeI | ACTAGT | 1 cut(s) | 1123 |
| SphI | GCATGC | 1 cut(s) | 993 |
| Sse9I | AATT | 7 cut(s) | 423, 525, 532, 675, 708, 1050, 1248 |
| SseBI | AGGCCT | 1 cut(s) | 473 |
| SsiI | CCGC | 6 cut(s) | 61, 93, 117, 130, 148, 407 |
| SspMI | CTAG | 4 cut(s) | 185, 714, 939, 1124 |
| StuI | AGGCCT | 1 cut(s) | 473 |
| StyD4I | CCNGG | 5 cut(s) | 156, 328, 329, 593, 850 |
| StyI | CCWWGG | 1 cut(s) | 789 |
| TaaI | ACNGT | 5 cut(s) | 74, 560, 838, 1193, 1354 |
| TaiI | ACGT | 1 cut(s) | 395 |
| TaqI | TCGA | 2 cut(s) | 662, 1324 |
| TasI | AATT | 7 cut(s) | 423, 525, 532, 675, 708, 1050, 1248 |
| TatI | WGTACW | 1 cut(s) | 1298 |
| TauI | GCSGC | 3 cut(s) | 119, 132, 150 |
| TfiI | GAWTC | 7 cut(s) | 325, 508, 704, 874, 968, 1114, 1326 |
| TscAI | CASTG | 8 cut(s) | 27, 543, 700, 807, 843, 1026, 1230, 1357 |
| TseFI | GTSAC | 2 cut(s) | 11, 973 |
| TseI | GCWGC | 4 cut(s) | 698, 740, 785, 1130 |
| Tsp45I | GTSAC | 2 cut(s) | 11, 973 |
| TspDTI | ATGAA | 7 cut(s) | 327, 359, 537, 738, 1229, 1241, 1290 |
| TspGWI | ACGGA | 3 cut(s) | 76, 483, 961 |
| TspMI | CCCGGG | 1 cut(s) | 329 |
| TspRI | CASTG | 8 cut(s) | 27, 543, 700, 807, 843, 1026, 1230, 1357 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1054 |
| VpaK11BI | GGWCC | 2 cut(s) | 731, 1405 |
| XapI | RAATTY | 3 cut(s) | 532, 1050, 1248 |
| XbaI | TCTAGA | 1 cut(s) | 713 |
| XceI | RCATGY | 2 cut(s) | 993, 1015 |
| XmaI | CCCGGG | 1 cut(s) | 329 |
| XmiI | GTMKAC | 1 cut(s) | 844 |
| XmnI | GAANNNNTTC | 1 cut(s) | 658 |
| XspI | CTAG | 4 cut(s) | 185, 714, 939, 1124 |
| Zsp2I | ATGCAT | 1 cut(s) | 995 |