Rmu_sc0032811.1_g000001

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032811.1
Physical Location & Seq
Reverse (-)
522 .. 5166
4645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032811.1_g000001.1.cds

Sequence Viewer

Length: 1413 bp
atggcgaaaggtgacgacgcagtgaggaagaagctaaacaaggccaacaggaagaagctccgcaaggatgaccgttcttcctcctccgttaccgctcgcgtcgcctccattatcgccgccaaaaagcgccgccactccggcaaacgccgcaaatgccagggtatgtgctttagccttcctacgctagaggatcccttcaatgacaggaatggtagaaaggattttgagaaagaaaccaagaaagtcatgcttccacatagggatgagagtgagtttctcagggaaaaatgtaaagaaatcattagaaagaatgaaaaggcaaagaatcccgggctgaagaatatgaaggtaacgagtttgaagaatgagcagaagaaatcactcccgtttacgtctattgatagcgcggtgcagagaagcagaattgactcagttaggacaaagactcagctgagtaggaaacaggaagaggcctgcgaaaactcagattgtccgtccaagtatctgattcggtgtttgaatgaaattgagaattcactgcgttgtgatggtacctacagtaatgaggaggacaagccattatttgttagtacctggggagttgagttttggaaatgttattcagctggaaaggatatattggagacaagtggaacttcttcgacaatagagcaaattgcatggattgtttccagtgctgctgattcaatttctagaaaggatgaagaaggtccatcagctgccagtccatttcttttgttccttgttgcatctcaggagaaagctgccaaggtgcgttcagtgtgcaaacctttgaaggttcttggaatacatacagtgagtatacaccctggtgcttccttagatcaccagattcaaggtctgaagagttcggagcctgagtttatgatctcaacacctgagagactcttacaccctagatcagtccatagattatctctgaatgattccgtcaccagtcaaagtgcatgcatcattcagtcagtaaacatgtcttcactgaaagaaaaactatcaaaggcagtccaaattctgggtcaaccttttgctcaggtttcaaaggtgctatatgtagtagggaaagatagccagaatcataaactagttgctgcgctaaaactcaagggtcattccatctcatttgtctcggcctgttcagaagttgggaacagtatggagttgaagggcaagatgaagcctgcagtgtccatgattgatgcagaccaaattcataccagcgagttgggtgaatatgaatgtgtagttatatacgattgtactctatccattgaaagttatgttcgaatcctcacaaacatggcccgttacactgtgaatggtgtattgcatacctttttaccacagaagatgcaaaacttgccggaccattga

Protein Analysis

470

Amino Acids

52.55

Weight (kDa)

9.37

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 844
AccII CGCG 2 cut(s) 99, 407
AciI CCGC 6 cut(s) 61, 93, 117, 130, 148, 407
AclWI GGATC 2 cut(s) 185, 198
AcsI RAATTY 3 cut(s) 532, 1050, 1248
AcuI CTGAAG 2 cut(s) 356, 905
AfaI GTAC 3 cut(s) 553, 592, 1300
AfiI CCNNNNNNNGG 1 cut(s) 1054
AflIII ACRYGT 1 cut(s) 1011
AgsI TTSAA 9 cut(s) 199, 361, 520, 708, 817, 878, 1080, 1204, 1313
AhlI ACTAGT 1 cut(s) 1123
AjnI CCWGG 3 cut(s) 156, 593, 850
AleI CACNNNNGTG 1 cut(s) 852
AluBI AGCT 6 cut(s) 34, 58, 451, 626, 740, 785
AluI AGCT 6 cut(s) 34, 58, 451, 626, 740, 785
Alw26I GTCTC 3 cut(s) 638, 919, 1171
AlwI GGATC 2 cut(s) 185, 198
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 4 cut(s) 42, 471, 1170, 1341
ApeKI GCWGC 4 cut(s) 698, 740, 785, 1130
ApoI RAATTY 3 cut(s) 532, 1050, 1248
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
Asp700I GAANNNNTTC 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 3 cut(s) 129, 407, 1135
AspS9I GGNCC 3 cut(s) 731, 1342, 1405
AsuC2I CCSGG 2 cut(s) 330, 331
AsuHPI GGTGA 4 cut(s) 23, 860, 967, 1280
AsuII TTCGAA 1 cut(s) 1324
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 2 cut(s) 731, 1405
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 1008
BbvI GCAGC 4 cut(s) 685, 727, 772, 1117
BccI CCATC 3 cut(s) 542, 742, 1163
BciT130I CCWGG 3 cut(s) 158, 595, 852
BcnI CCSGG 2 cut(s) 330, 331
BcoDI GTCTC 3 cut(s) 638, 919, 1171
BcuI ACTAGT 1 cut(s) 1123
BfaI CTAG 4 cut(s) 185, 714, 939, 1124
BfmI CTRYAG 2 cut(s) 556, 1221
BfoI RGCGCY 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 7 cut(s) 117, 130, 148, 699, 741, 786, 1131
BlsI GCNGC 7 cut(s) 118, 131, 149, 700, 742, 787, 1132
Bme1390I CCNGG 5 cut(s) 158, 330, 331, 595, 852
Bme18I GGWCC 2 cut(s) 731, 1405
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 3 cut(s) 731, 1342, 1405
BmiI GGNNCC 3 cut(s) 192, 553, 897
BmrFI CCNGG 5 cut(s) 158, 330, 331, 595, 852
BmsI GCATC 4 cut(s) 779, 1002, 1228, 1380
BpiI GAAGAC 1 cut(s) 1008
Bpu10I CCTNAGC 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 1324
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 2 cut(s) 330, 331
BsaJI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 1054
Bse1I ACTGG 3 cut(s) 693, 744, 978
BseBI CCWGG 3 cut(s) 158, 595, 852
BseDI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BseGI GGATG 3 cut(s) 73, 268, 727
BseLI CCNNNNNNNGG 1 cut(s) 1054
BseMII CTCAG 9 cut(s) 292, 443, 444, 461, 498, 788, 891, 912, 1085
BseNI ACTGG 3 cut(s) 693, 744, 978
BseRI GAGGAG 2 cut(s) 73, 581
BseXI GCAGC 4 cut(s) 685, 727, 772, 1117
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 2 cut(s) 99, 407
BshFI GGCC 4 cut(s) 44, 473, 1172, 1343
BshNI GGYRCC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 3 cut(s) 138, 330, 1403
BslI CCNNNNNNNGG 1 cut(s) 1054
BsmAI GTCTC 3 cut(s) 638, 919, 1171
BsnI GGCC 4 cut(s) 44, 473, 1172, 1343
BsoBI CYCGRG 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 1324
Bsp143I GATC 4 cut(s) 190, 865, 909, 941
BspACI CCGC 6 cut(s) 61, 93, 117, 130, 148, 407
BspANI GGCC 4 cut(s) 44, 473, 1172, 1343
BspCNI CTCAG 9 cut(s) 291, 443, 444, 460, 497, 787, 892, 913, 1084
BspFNI CGCG 2 cut(s) 99, 407
BspLI GGNNCC 3 cut(s) 192, 553, 897
BspMAI CTGCAG 1 cut(s) 1225
BspPI GGATC 2 cut(s) 185, 198
BspT104I TTCGAA 1 cut(s) 1324
BspT107I GGYRCC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 693, 744, 978
BssECI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BssMI GATC 4 cut(s) 190, 865, 909, 941
BssNAI GTATAC 1 cut(s) 845
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 845
Bst2UI CCWGG 3 cut(s) 158, 595, 852
Bst4CI ACNGT 5 cut(s) 74, 560, 838, 1193, 1354
Bst6I CTCTTC 2 cut(s) 462, 881
BstAPI GCANNNNNTGC 1 cut(s) 1399
BstBI TTCGAA 1 cut(s) 1324
BstC8I GCNNGC 4 cut(s) 97, 475, 991, 1221
BstF5I GGATG 3 cut(s) 73, 268, 727
BstFNI CGCG 2 cut(s) 99, 407
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 3 cut(s) 129, 407, 1135
BstKTI GATC 4 cut(s) 193, 868, 912, 944
BstMAI GTCTC 3 cut(s) 638, 919, 1171
BstMBI GATC 4 cut(s) 190, 865, 909, 941
BstMWI GCNNNNNNNGC 5 cut(s) 101, 138, 147, 153, 1399
BstNI CCWGG 3 cut(s) 158, 595, 852
BstNSI RCATGY 2 cut(s) 993, 1015
BstSCI CCNGG 5 cut(s) 156, 328, 329, 593, 850
BstSFI CTRYAG 2 cut(s) 556, 1221
BstUI CGCG 2 cut(s) 99, 407
BstV1I GCAGC 4 cut(s) 685, 727, 772, 1117
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 845
BsuRI GGCC 4 cut(s) 44, 473, 1172, 1343
BtsCI GGATG 3 cut(s) 73, 268, 727
BtsI GCAGTG 3 cut(s) 27, 536, 1230
BtsIMutI CAGTG 8 cut(s) 27, 536, 700, 807, 843, 1019, 1230, 1350
Cac8I GCNNGC 4 cut(s) 97, 475, 991, 1221
CfoI GCGC 3 cut(s) 129, 407, 1135
Cfr13I GGNCC 3 cut(s) 731, 1342, 1405
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 2 cut(s) 26, 88
Csp6I GTAC 3 cut(s) 552, 591, 1299
CviAII CATG 6 cut(s) 247, 681, 990, 1012, 1231, 1339
CviQI GTAC 3 cut(s) 552, 591, 1299
DpnI GATC 4 cut(s) 192, 867, 911, 943
DpnII GATC 4 cut(s) 190, 865, 909, 941
Eam1104I CTCTTC 2 cut(s) 462, 881
EarI CTCTTC 2 cut(s) 462, 881
Eco130I CCWWGG 1 cut(s) 789
Eco147I AGGCCT 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 731, 1405
Eco57I CTGAAG 2 cut(s) 356, 905
Eco88I CYCGRG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 3 cut(s) 156, 593, 850
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 995
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 6 cut(s) 250, 684, 993, 1015, 1234, 1342
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 640, 672
FatI CATG 6 cut(s) 246, 680, 989, 1011, 1230, 1338
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 7 cut(s) 117, 130, 148, 699, 741, 786, 1131
FokI GGATG 3 cut(s) 80, 275, 734
Fsp4HI GCNGC 7 cut(s) 117, 130, 148, 699, 741, 786, 1131
FspBI CTAG 4 cut(s) 185, 714, 939, 1124
GlaI GCGC 3 cut(s) 128, 406, 1134
GluI GCNGC 7 cut(s) 117, 130, 148, 699, 741, 786, 1131
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 4 cut(s) 44, 473, 1172, 1343
HapII CCGG 3 cut(s) 138, 330, 1403
HgaI GACGC 2 cut(s) 26, 88
HhaI GCGC 3 cut(s) 129, 407, 1135
Hin1II CATG 6 cut(s) 250, 684, 993, 1015, 1234, 1342
Hin6I GCGC 3 cut(s) 127, 405, 1133
HinP1I GCGC 3 cut(s) 127, 405, 1133
HincII GTYRAC 1 cut(s) 1061
HindII GTYRAC 1 cut(s) 1061
HpaII CCGG 3 cut(s) 138, 330, 1403
HphI GGTGA 4 cut(s) 23, 860, 967, 1280
Hpy166II GTNNAC 4 cut(s) 390, 845, 1009, 1061
Hpy188I TCNGA 6 cut(s) 487, 507, 885, 895, 963, 1180
Hpy188III TCNNGA 2 cut(s) 714, 776
Hpy8I GTNNAC 4 cut(s) 390, 845, 1009, 1061
Hpy99I CGWCG 2 cut(s) 20, 104
HpyAV CCTTC 6 cut(s) 185, 205, 340, 722, 811, 1198
HpyCH4III ACNGT 5 cut(s) 74, 560, 838, 1193, 1354
HpyCH4IV ACGT 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 138, 147, 153, 1399
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 6 cut(s) 250, 684, 993, 1015, 1234, 1342
HspAI GCGC 3 cut(s) 127, 405, 1133
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 4 cut(s) 190, 865, 909, 941
LmnI GCTCC 2 cut(s) 63, 895
Lsp1109I GCAGC 4 cut(s) 685, 727, 772, 1117
LweI GCATC 4 cut(s) 779, 1002, 1228, 1380
MaeI CTAG 4 cut(s) 185, 714, 939, 1124
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 5 cut(s) 11, 88, 349, 973, 1346
MalI GATC 4 cut(s) 192, 867, 911, 943
MbiI CCGCTC 1 cut(s) 95
MboI GATC 4 cut(s) 190, 865, 909, 941
MflI RGATCY 1 cut(s) 190
MluCI AATT 7 cut(s) 423, 525, 532, 675, 708, 1050, 1248
MlyI GAGTC 3 cut(s) 422, 439, 921
MnlI CCTC 9 cut(s) 18, 91, 94, 115, 181, 463, 559, 562, 1340
Mph1103I ATGCAT 1 cut(s) 995
MroXI GAANNNNTTC 1 cut(s) 658
MslI CAYNNNNRTG 3 cut(s) 261, 852, 1337
MspA1I CMGCKG 3 cut(s) 451, 626, 740
MspI CCGG 3 cut(s) 138, 330, 1403
MspR9I CCNGG 5 cut(s) 158, 330, 331, 595, 852
MvaI CCWGG 3 cut(s) 158, 595, 852
MvnI CGCG 2 cut(s) 99, 407
MwoI GCNNNNNNNGC 5 cut(s) 101, 138, 147, 153, 1399
NciI CCSGG 2 cut(s) 330, 331
NdeII GATC 4 cut(s) 190, 865, 909, 941
NlaIII CATG 6 cut(s) 250, 684, 993, 1015, 1234, 1342
NlaIV GGNNCC 3 cut(s) 192, 553, 897
NmeAIII GCCGAG 1 cut(s) 1148
NmuCI GTSAC 2 cut(s) 11, 973
NsiI ATGCAT 1 cut(s) 995
NspI RCATGY 2 cut(s) 993, 1015
NspV TTCGAA 1 cut(s) 1324
OliI CACNNNNGTG 1 cut(s) 852
PaeI GCATGC 1 cut(s) 993
PceI AGGCCT 1 cut(s) 473
PciI ACATGT 1 cut(s) 1011
PdmI GAANNNNTTC 1 cut(s) 658
PfeI GAWTC 7 cut(s) 325, 508, 704, 874, 968, 1114, 1326
PflMI CCANNNNNTGG 1 cut(s) 1054
PkrI GCNGC 7 cut(s) 118, 131, 149, 700, 742, 787, 1132
PleI GAGTC 3 cut(s) 422, 439, 921
PpsI GAGTC 3 cut(s) 422, 439, 921
PscI ACATGT 1 cut(s) 1011
Psp6I CCWGG 3 cut(s) 156, 593, 850
PspGI CCWGG 3 cut(s) 156, 593, 850
PspN4I GGNNCC 3 cut(s) 192, 553, 897
PspPI GGNCC 3 cut(s) 731, 1342, 1405
PstI CTGCAG 1 cut(s) 1225
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 3 cut(s) 451, 626, 740
RsaI GTAC 3 cut(s) 553, 592, 1300
RsaNI GTAC 3 cut(s) 552, 591, 1299
RseI CAYNNNNRTG 3 cut(s) 261, 852, 1337
SatI GCNGC 7 cut(s) 117, 130, 148, 699, 741, 786, 1131
Sau3AI GATC 4 cut(s) 190, 865, 909, 941
Sau96I GGNCC 3 cut(s) 731, 1342, 1405
SchI GAGTC 3 cut(s) 422, 439, 921
ScrFI CCNGG 5 cut(s) 158, 330, 331, 595, 852
SfaNI GCATC 4 cut(s) 779, 1002, 1228, 1380
SfcI CTRYAG 2 cut(s) 556, 1221
SfuI TTCGAA 1 cut(s) 1324
SinI GGWCC 2 cut(s) 731, 1405
SmaI CCCGGG 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 261, 852, 1337
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SpeI ACTAGT 1 cut(s) 1123
SphI GCATGC 1 cut(s) 993
Sse9I AATT 7 cut(s) 423, 525, 532, 675, 708, 1050, 1248
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 6 cut(s) 61, 93, 117, 130, 148, 407
SspMI CTAG 4 cut(s) 185, 714, 939, 1124
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 5 cut(s) 156, 328, 329, 593, 850
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 5 cut(s) 74, 560, 838, 1193, 1354
TaiI ACGT 1 cut(s) 395
TaqI TCGA 2 cut(s) 662, 1324
TasI AATT 7 cut(s) 423, 525, 532, 675, 708, 1050, 1248
TatI WGTACW 1 cut(s) 1298
TauI GCSGC 3 cut(s) 119, 132, 150
TfiI GAWTC 7 cut(s) 325, 508, 704, 874, 968, 1114, 1326
TscAI CASTG 8 cut(s) 27, 543, 700, 807, 843, 1026, 1230, 1357
TseFI GTSAC 2 cut(s) 11, 973
TseI GCWGC 4 cut(s) 698, 740, 785, 1130
Tsp45I GTSAC 2 cut(s) 11, 973
TspDTI ATGAA 7 cut(s) 327, 359, 537, 738, 1229, 1241, 1290
TspGWI ACGGA 3 cut(s) 76, 483, 961
TspMI CCCGGG 1 cut(s) 329
TspRI CASTG 8 cut(s) 27, 543, 700, 807, 843, 1026, 1230, 1357
Van91I CCANNNNNTGG 1 cut(s) 1054
VpaK11BI GGWCC 2 cut(s) 731, 1405
XapI RAATTY 3 cut(s) 532, 1050, 1248
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 2 cut(s) 993, 1015
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 658
XspI CTAG 4 cut(s) 185, 714, 939, 1124
Zsp2I ATGCAT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.