Rw0G018010

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00794
Physical Location & Seq
Forward (+)
84571 .. 89232
4662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018010.1

Sequence Viewer

Length: 1272 bp
ATGTTATGGGCTTATGGCAAAAAAAAAAAAAAGGGTATGTGCTTTAGCCTTCCGACGCTAGAGGATCCCTTCAATGACAGGAATGGTAGAAAGGATTTTGAGAAAGAAACCAAGAAAGTCATGCTTCCACATAGGGATGAAGTGAGTTTTCTCAGGGAAAATGTAAAGAAATTATTAGAAAAAGAAAAGGCAAAGAATCCCGGGCTGAAGAATATGAAGGTAATGAGTTTGAAGAATGAGCAGAAAAATCACTCCCGTTTACTTTGGAAATGTTATTCAGCTGGAAAGGATGTATTAGAGACAAGTGGAACTTCTTCGACAATAAGCAAATTGCTTGGATTGTTTCCAGTGCTGCTCCACCAGTCCATTCTTTTGTTCCTTGTTGCATCTCAGGAGAAAGCAGCCAAGGTTGTGCAAACCTTTGAAGGTTCTGGAATACATACAGTGAGTATACACCCTGGTGCTTCCTTAGATCACCAGATTCAAGGTCTGAAGAGTTCGGAGCCTGAGTTTATGATCTCAACACCTGAGAGACTCTTGGAGCTTCTTTCCTTGAAGGCCATTGATCTATCAGGGGTTTCTTGGCTGATCGTTGATGGACTGGAGTCTTTTCATAAACATGGCTATCTTGATAAAGTAAATTCCATCCGAAATTATATATCCAGAACAACCCGTGCAGTTGTTTTTGAAGATTGTTTTAGACGTGCCTGTGTACCAGTGGTGCAAACTCTTCTGATAGGATCAGTCCATAGATTATCTCTGAATATTTCAGTCACCAGCATTCAGTCAGTAAACATGTCACTGAAAGAAAAACTATCAAAGGCAGTCCAAATTCTGGGTCAACCTTGTGCTCAGGCTTCAAAGGTGCTATATGTAGTAGGGAAAGATAGCCAGAATCATAAACTAGTTGCTGCGCTAAAACTCAAGGGTCATGCCATCTCATTTGTCTTGGCCTGTTCAGAAGTTGGGAACAGTATGGAGTTGAAGGGCAAGGTGAAGCCTGCAGTGTCCATGATTGATGCAGACCAAATTCATACCAGCGAGTTGGGTGAATATGAATGTGTAGTTATATACGATTGTACTCTATCCATTGAAAGTTATGTTCGAATCCTCACAAACATGGCCCGTTACACTGTGAATGGTGTATTGCATACCTTTTTTACCACAGAAGATGCAAAACTTGCCGGACCATTGATCAAGATCCTTGAGCAATGTGGGCAGTCAGTGCCTGAAGCGCTACGAAAAATGTCTCTTTCATCAGCCATGTTGTAA

Protein Analysis

423

Amino Acids

47.01

Weight (kDa)

9.23

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 119 - 221 2.1e-06 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 835
AccI GTMKAC 1 cut(s) 451
AclWI GGATC 4 cut(s) 59, 72, 748, 1195
AcsI RAATTY 3 cut(s) 640, 831, 1029
AcuI CTGAAG 3 cut(s) 227, 512, 1251
AfaI GTAC 2 cut(s) 714, 1081
AfeI AGCGCT 1 cut(s) 1236
AfiI CCNNNNNNNGG 1 cut(s) 835
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 9 cut(s) 73, 232, 425, 485, 556, 689, 861, 985, 1094
AhlI ACTAGT 1 cut(s) 904
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 1 cut(s) 457
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 2 cut(s) 281, 544
AluI AGCT 2 cut(s) 281, 544
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 3 cut(s) 293, 526, 1254
AlwI GGATC 4 cut(s) 59, 72, 748, 1195
AlwNI CAGNNNCTG 1 cut(s) 1229
Ama87I CYCGRG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 1236
AoxI GGCC 3 cut(s) 558, 951, 1122
ApeKI GCWGC 3 cut(s) 352, 401, 911
ApoI RAATTY 3 cut(s) 640, 831, 1029
ArsI GACNNNNNNTTYG 2 cut(s) 823, 855
Asp700I GAANNNNTTC 1 cut(s) 313
AspLEI GCGC 2 cut(s) 916, 1237
AspS9I GGNCC 2 cut(s) 1123, 1187
AsuC2I CCSGG 2 cut(s) 201, 202
AsuHPI GGTGA 4 cut(s) 467, 766, 1006, 1061
AsuII TTCGAA 1 cut(s) 1105
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 1187
BamHI GGATCC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 3 cut(s) 339, 413, 898
BccI CCATC 3 cut(s) 590, 653, 944
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 1 cut(s) 1194
BcnI CCSGG 2 cut(s) 201, 202
BcoDI GTCTC 3 cut(s) 293, 526, 1254
BcuI ACTAGT 1 cut(s) 904
BfaI CTAG 2 cut(s) 59, 905
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 1 cut(s) 1238
BisI GCNGC 3 cut(s) 353, 402, 912
BlsI GCNGC 3 cut(s) 354, 403, 913
Bme1390I CCNGG 3 cut(s) 201, 202, 459
Bme18I GGWCC 1 cut(s) 1187
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 704
BmgT120I GGNCC 2 cut(s) 1123, 1187
BmiI GGNNCC 2 cut(s) 66, 504
BmrFI CCNGG 3 cut(s) 201, 202, 459
BmsI GCATC 3 cut(s) 395, 1009, 1162
BoxI GACNNNNGTC 1 cut(s) 604
BpmI CTGGAG 1 cut(s) 623
Bpu10I CCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 1105
BpuEI CTTGAG 2 cut(s) 908, 1226
BpuMI CCSGG 2 cut(s) 201, 202
BsaBI GATNNNNATC 1 cut(s) 1199
BsaJI CCNNGG 3 cut(s) 200, 405, 457
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 4 cut(s) 347, 361, 606, 716
Bse3DI GCAATG 1 cut(s) 1217
Bse8I GATNNNNATC 1 cut(s) 1199
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 200, 405, 457
BseGI GGATG 3 cut(s) 142, 295, 645
BseJI GATNNNNATC 1 cut(s) 1199
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 1 cut(s) 1217
BseMII CTCAG 5 cut(s) 166, 404, 498, 519, 866
BseNI ACTGG 4 cut(s) 347, 361, 606, 716
BseXI GCAGC 3 cut(s) 339, 413, 898
BsgI GTGCAG 1 cut(s) 696
BshFI GGCC 3 cut(s) 560, 953, 1124
BsiHKAI GWGCWC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 201, 1185
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 3 cut(s) 293, 526, 1254
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 3 cut(s) 560, 953, 1124
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 1105
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
BspANI GGCC 3 cut(s) 560, 953, 1124
BspCNI CTCAG 5 cut(s) 165, 403, 499, 520, 865
BspLI GGNNCC 2 cut(s) 66, 504
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 4 cut(s) 59, 72, 748, 1195
BspT104I TTCGAA 1 cut(s) 1105
BsrDI GCAATG 1 cut(s) 1217
BsrI ACTGG 4 cut(s) 347, 361, 606, 716
BssECI CCNNGG 3 cut(s) 200, 405, 457
BssMI GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
BssNAI GTATAC 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 3 cut(s) 445, 974, 1135
Bst6I CTCTTC 2 cut(s) 488, 735
BstAPI GCANNNNNTGC 2 cut(s) 1181, 1225
BstBI TTCGAA 1 cut(s) 1105
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 6 cut(s) 152, 390, 469, 507, 528, 852
BstF5I GGATG 3 cut(s) 142, 295, 645
BstH2I RGCGCY 1 cut(s) 1238
BstHHI GCGC 2 cut(s) 916, 1237
BstKTI GATC 8 cut(s) 67, 475, 519, 568, 591, 743, 1197, 1203
BstMAI GTCTC 3 cut(s) 293, 526, 1254
BstMBI GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
BstMWI GCNNNNNNNGC 4 cut(s) 1181, 1216, 1225, 1234
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 1 cut(s) 799
BstPAI GACNNNNGTC 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 199, 200, 457
BstSFI CTRYAG 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 339, 413, 898
BstX2I RGATCY 2 cut(s) 64, 1200
BstXI CCANNNNNNTGG 1 cut(s) 1045
BstYI RGATCY 2 cut(s) 64, 1200
BstZ17I GTATAC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 560, 953, 1124
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 3 cut(s) 142, 295, 645
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 7 cut(s) 354, 450, 723, 800, 1011, 1131, 1230
Cac8I GCNNGC 1 cut(s) 1002
CaiI CAGNNNCTG 1 cut(s) 1229
CfoI GCGC 2 cut(s) 916, 1237
Cfr13I GGNCC 2 cut(s) 1123, 1187
Cfr9I CCCGGG 1 cut(s) 200
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 713, 1080
CviAII CATG 7 cut(s) 121, 620, 796, 932, 1012, 1120, 1264
CviQI GTAC 2 cut(s) 713, 1080
DdeI CTNAG 6 cut(s) 152, 390, 469, 507, 528, 852
DpnI GATC 8 cut(s) 66, 474, 518, 567, 590, 742, 1196, 1202
DpnII GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
Eam1104I CTCTTC 2 cut(s) 488, 735
EarI CTCTTC 2 cut(s) 488, 735
Eco130I CCWWGG 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 1187
Eco47III AGCGCT 1 cut(s) 1236
Eco57I CTGAAG 3 cut(s) 227, 512, 1251
Eco88I CYCGRG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 7 cut(s) 124, 623, 799, 935, 1015, 1123, 1267
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 295, 327
FatI CATG 7 cut(s) 120, 619, 795, 931, 1011, 1119, 1263
FbaI TGATCA 1 cut(s) 1194
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 353, 402, 912
FokI GGATG 3 cut(s) 149, 302, 632
Fsp4HI GCNGC 3 cut(s) 353, 402, 912
FspBI CTAG 2 cut(s) 59, 905
GlaI GCGC 2 cut(s) 915, 1236
GluI GCNGC 3 cut(s) 353, 402, 912
GsuI CTGGAG 1 cut(s) 623
HaeII RGCGCY 1 cut(s) 1238
HaeIII GGCC 3 cut(s) 560, 953, 1124
HapII CCGG 2 cut(s) 201, 1185
HgaI GACGC 1 cut(s) 64
HhaI GCGC 2 cut(s) 916, 1237
Hin1II CATG 7 cut(s) 124, 623, 799, 935, 1015, 1123, 1267
Hin6I GCGC 2 cut(s) 914, 1235
HinP1I GCGC 2 cut(s) 914, 1235
HincII GTYRAC 1 cut(s) 842
HindII GTYRAC 1 cut(s) 842
HinfI GANTC 6 cut(s) 196, 481, 534, 605, 895, 1107
HpaII CCGG 2 cut(s) 201, 1185
HphI GGTGA 4 cut(s) 467, 766, 1006, 1061
Hpy166II GTNNAC 5 cut(s) 260, 452, 713, 793, 842
Hpy188I TCNGA 7 cut(s) 54, 492, 502, 650, 735, 762, 961
Hpy188III TCNNGA 5 cut(s) 392, 432, 629, 663, 1198
Hpy8I GTNNAC 5 cut(s) 260, 452, 713, 793, 842
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 6 cut(s) 59, 79, 211, 419, 550, 979
HpyCH4III ACNGT 3 cut(s) 445, 974, 1135
HpyCH4IV ACGT 1 cut(s) 703
HpyCH4V TGCA 8 cut(s) 386, 415, 677, 724, 1004, 1022, 1150, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 1181, 1216, 1225, 1234
HpyF3I CTNAG 6 cut(s) 152, 390, 469, 507, 528, 852
HpySE526I ACGT 1 cut(s) 703
Hsp92II CATG 7 cut(s) 124, 623, 799, 935, 1015, 1123, 1267
HspAI GCGC 2 cut(s) 914, 1235
Ksp22I TGATCA 1 cut(s) 1194
Kzo9I GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
LmnI GCTCC 3 cut(s) 360, 502, 541
Lsp1109I GCAGC 3 cut(s) 339, 413, 898
LweI GCATC 3 cut(s) 395, 1009, 1162
MaeI CTAG 2 cut(s) 59, 905
MaeII ACGT 1 cut(s) 703
MaeIII GTNAC 3 cut(s) 772, 798, 1127
MalI GATC 8 cut(s) 66, 474, 518, 567, 590, 742, 1196, 1202
MboI GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
MboII GAAGA 7 cut(s) 220, 244, 306, 505, 701, 722, 1181
MflI RGATCY 2 cut(s) 64, 1200
MhlI GDGCHC 1 cut(s) 853
MluCI AATT 6 cut(s) 170, 329, 640, 652, 831, 1029
MlyI GAGTC 2 cut(s) 528, 614
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 55, 1121
MroXI GAANNNNTTC 1 cut(s) 313
MslI CAYNNNNRTG 4 cut(s) 135, 459, 618, 1118
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 201, 1185
MspR9I CCNGG 3 cut(s) 201, 202, 459
Mva1269I GAATGC 1 cut(s) 780
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 4 cut(s) 1181, 1216, 1225, 1234
NciI CCSGG 2 cut(s) 201, 202
NdeII GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
NlaIII CATG 7 cut(s) 124, 623, 799, 935, 1015, 1123, 1267
NlaIV GGNNCC 2 cut(s) 66, 504
NmuCI GTSAC 2 cut(s) 772, 798
NspI RCATGY 1 cut(s) 799
NspV TTCGAA 1 cut(s) 1105
OliI CACNNNNGTG 1 cut(s) 459
PciI ACATGT 1 cut(s) 795
PctI GAATGC 1 cut(s) 780
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 4 cut(s) 196, 481, 895, 1107
PflMI CCANNNNNTGG 1 cut(s) 835
PkrI GCNGC 3 cut(s) 354, 403, 913
PleI GAGTC 2 cut(s) 528, 613
PpsI GAGTC 2 cut(s) 528, 613
PscI ACATGT 1 cut(s) 795
PshAI GACNNNNGTC 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 66, 504
PspPI GGNCC 2 cut(s) 1123, 1187
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 1 cut(s) 1229
PsuI RGATCY 2 cut(s) 64, 1200
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 714, 1081
RsaNI GTAC 2 cut(s) 713, 1080
RseI CAYNNNNRTG 4 cut(s) 135, 459, 618, 1118
SatI GCNGC 3 cut(s) 353, 402, 912
Sau3AI GATC 8 cut(s) 64, 472, 516, 565, 588, 740, 1194, 1200
Sau96I GGNCC 2 cut(s) 1123, 1187
SchI GAGTC 2 cut(s) 528, 614
ScrFI CCNGG 3 cut(s) 201, 202, 459
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 3 cut(s) 395, 1009, 1162
SfcI CTRYAG 1 cut(s) 1002
SfuI TTCGAA 1 cut(s) 1105
SinI GGWCC 1 cut(s) 1187
SmaI CCCGGG 1 cut(s) 202
SmiMI CAYNNNNRTG 4 cut(s) 135, 459, 618, 1118
SmlI CTYRAG 2 cut(s) 923, 1205
SmoI CTYRAG 2 cut(s) 923, 1205
SpeI ACTAGT 1 cut(s) 904
Sse9I AATT 6 cut(s) 170, 329, 640, 652, 831, 1029
SspI AATATT 1 cut(s) 766
SspMI CTAG 2 cut(s) 59, 905
StyD4I CCNGG 3 cut(s) 199, 200, 457
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 3 cut(s) 445, 974, 1135
TaiI ACGT 1 cut(s) 706
TaqI TCGA 2 cut(s) 317, 1105
TasI AATT 6 cut(s) 170, 329, 640, 652, 831, 1029
TatI WGTACW 1 cut(s) 1079
TfiI GAWTC 4 cut(s) 196, 481, 895, 1107
TscAI CASTG 7 cut(s) 354, 450, 723, 807, 1011, 1138, 1230
TseFI GTSAC 2 cut(s) 772, 798
TseI GCWGC 3 cut(s) 352, 401, 911
Tsp45I GTSAC 2 cut(s) 772, 798
TspDTI ATGAA 6 cut(s) 153, 230, 602, 1022, 1071, 1245
TspMI CCCGGG 1 cut(s) 200
TspRI CASTG 7 cut(s) 354, 450, 723, 807, 1011, 1138, 1230
Van91I CCANNNNNTGG 1 cut(s) 835
VpaK11BI GGWCC 1 cut(s) 1187
XapI RAATTY 3 cut(s) 640, 831, 1029
XceI RCATGY 1 cut(s) 799
XmaI CCCGGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 451
XmnI GAANNNNTTC 1 cut(s) 313
XspI CTAG 2 cut(s) 59, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.