Rw1G011410

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
25639973 .. 25645082
5110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011410.1

Sequence Viewer

Length: 1389 bp
ATGGCGAAAGGTGACGACGCAGTGAGGAAGAAGCTAAACAAGGCCAACAGGAAGAAGCTCCGCAAGGATGACCGTTCTTCCTCCTCCGTTACCGCTCGCGTCGCCTCCATTATCGCCGCCAAAAAGCGCCGCCACTCCGGCAAACGCCGCAAATGCCAGGGTATGTGCTTTAGCCTTCCTACGCTAGAGGATCCCTTCAATGACAGGAATGGTAGAAAGGATTTTGAGAAAGAAACCAAGAAAGTCATGCTTCCACATAGGGATGAGAGTGAGTTTCTCAGGGAAAAATGTAAAGAAATTATTAGAAAGAATGAAAAGGCAAAGAATCCCGGGCTGAAGAATATGAAGGTAACGAGTTTGAAGAATGAGCAGAAGAAATCACTCCCGTTTACGTCTATTGATAGCGCCGTGCAGAGAAGCAGAATTGACTCAGTTAGGACAAAGACTCAGCTGAGTAGGAAACAGGAAGAGGCCTGCGAAAACTCAGATTGTCCGTCCAAGTATCTGATTCGGTGTTTGAATGAAATTGAGAATTCACTGCGTTGTGATGGTACCTACAGTAATGAGGAGGACAAGCCATTATTTGTTAGTACCTGGGGAGTTGAGTTTTGGAAATGTTATTCAGCTGGAAAGGATGTATTAGAGACAAGTGGAACTTCTTCGACAATAGAGCAAATTGCTTGGATTGTTTCCAGTGCTGCTGATTCAATTTCTAGAAAGGATGAAGAAGGTCCGCCAGCCACCAGTCCATTTCTTTTGTTCCTTGTTGCATCTCAGGAGAAAGCAGCCAAGGTGCGTTCAGTGTGCAAACCTTTGAAGGTTCTTGGAATACATACAGTGAGTATACACCCTGGTGCTTCCTTAGATCACCAGATTCAAGGTCTGAAGAGTTCGGAGCCTGAGTTTATGATCTCAACACCTGAGAGACTCTTGGAGCTTCTTTCCTTGAAGGCCATTGATCTATCAGGGGTTTCTTGGCTGATCGTTGATGGACTGGAGTCTTTTCATAAACATGGTTATCTTGATAAAGTAAATTCCATCCGAAATTATATATCCAGAACAACCCGTGCAGTTGTTTTTGAAGATTGTTTTAGACGTGCCTGTGTACCAGTGGTGCAAACTCTTCTGACAGGATCAGTCCATAGATTATCTCTGAATGATTCCGTTACCAGTCAAAGTGCATGCATCATTCAGTCAGTAAAAATGTCTTCACTGAAAGAAAAACTATCAAAGGCAGTCCAAATTCTGGGTCAACCTTTTGCTCAGACTTCAAAGGTGCTATATGTAGTAGGGAAAGATAGCCAGAATCATAAACTAGTTGCTGCGCTAAAACTCAAGGGTCATTCCATCTCATTTGTCTCGGCCTGTTCAGAAGTTGGGAACAGGTAA

Protein Analysis

462

Amino Acids

51.59

Weight (kDa)

9.56

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 1246
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 844
AccII CGCG 1 cut(s) 99
AciI CCGC 6 cut(s) 61, 93, 117, 130, 148, 734
AclWI GGATC 3 cut(s) 185, 198, 1141
AcsI RAATTY 3 cut(s) 532, 1033, 1242
AcuI CTGAAG 2 cut(s) 356, 905
AfaI GTAC 3 cut(s) 553, 592, 1107
AfiI CCNNNNNNNGG 1 cut(s) 1246
AgsI TTSAA 9 cut(s) 199, 361, 520, 708, 817, 878, 949, 1082, 1272
AhlI ACTAGT 1 cut(s) 1315
AjiI CACGTC 1 cut(s) 1097
AjnI CCWGG 3 cut(s) 156, 593, 850
AleI CACNNNNGTG 1 cut(s) 852
AluBI AGCT 5 cut(s) 34, 58, 451, 626, 937
AluI AGCT 5 cut(s) 34, 58, 451, 626, 937
Alw26I GTCTC 3 cut(s) 638, 919, 1363
AlwI GGATC 3 cut(s) 185, 198, 1141
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 4 cut(s) 42, 471, 951, 1362
ApeKI GCWGC 3 cut(s) 698, 785, 1322
ApoI RAATTY 3 cut(s) 532, 1033, 1242
ArsI GACNNNNNNTTYG 2 cut(s) 1234, 1266
Asp700I GAANNNNTTC 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 3 cut(s) 129, 407, 1327
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 2 cut(s) 330, 331
AsuHPI GGTGA 2 cut(s) 23, 860
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 731
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 1200
BbvI GCAGC 3 cut(s) 685, 797, 1309
BccI CCATC 4 cut(s) 542, 983, 1046, 1355
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 3 cut(s) 158, 595, 852
BcnI CCSGG 2 cut(s) 330, 331
BcoDI GTCTC 3 cut(s) 638, 919, 1363
BcuI ACTAGT 1 cut(s) 1315
BfaI CTAG 3 cut(s) 185, 714, 1316
BfmI CTRYAG 1 cut(s) 556
BfoI RGCGCY 2 cut(s) 130, 408
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 6 cut(s) 117, 130, 148, 699, 786, 1323
BlsI GCNGC 6 cut(s) 118, 131, 149, 700, 787, 1324
Bme1390I CCNGG 5 cut(s) 158, 330, 331, 595, 852
Bme18I GGWCC 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 1097
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 3 cut(s) 192, 553, 897
BmrFI CCNGG 5 cut(s) 158, 330, 331, 595, 852
BmsI GCATC 2 cut(s) 779, 1194
BoxI GACNNNNGTC 1 cut(s) 997
BpiI GAAGAC 1 cut(s) 1200
BpmI CTGGAG 1 cut(s) 1016
BpuEI CTTGAG 1 cut(s) 1319
BpuMI CCSGG 2 cut(s) 330, 331
BsaJI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 1246
Bse1I ACTGG 5 cut(s) 693, 744, 999, 1109, 1170
BseBI CCWGG 3 cut(s) 158, 595, 852
BseDI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BseGI GGATG 5 cut(s) 73, 268, 640, 727, 1038
BseLI CCNNNNNNNGG 1 cut(s) 1246
BseMII CTCAG 9 cut(s) 292, 443, 444, 461, 498, 788, 891, 912, 1277
BseNI ACTGG 5 cut(s) 693, 744, 999, 1109, 1170
BseRI GAGGAG 2 cut(s) 73, 581
BseXI GCAGC 3 cut(s) 685, 797, 1309
BsgI GTGCAG 2 cut(s) 431, 1089
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 44, 473, 953, 1364
BshNI GGYRCC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 2 cut(s) 138, 330
BslI CCNNNNNNNGG 1 cut(s) 1246
BsmAI GTCTC 3 cut(s) 638, 919, 1363
BsnI GGCC 4 cut(s) 44, 473, 953, 1364
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
BspACI CCGC 6 cut(s) 61, 93, 117, 130, 148, 734
BspANI GGCC 4 cut(s) 44, 473, 953, 1364
BspCNI CTCAG 9 cut(s) 291, 443, 444, 460, 497, 787, 892, 913, 1276
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 3 cut(s) 192, 553, 897
BspPI GGATC 3 cut(s) 185, 198, 1141
BspT107I GGYRCC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 5 cut(s) 693, 744, 999, 1109, 1170
BssECI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BssMI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
BssNAI GTATAC 1 cut(s) 845
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 845
Bst2UI CCWGG 3 cut(s) 158, 595, 852
Bst4CI ACNGT 3 cut(s) 74, 560, 838
Bst6I CTCTTC 3 cut(s) 462, 881, 1128
BstC8I GCNNGC 4 cut(s) 97, 475, 738, 1183
BstF5I GGATG 5 cut(s) 73, 268, 640, 727, 1038
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 130, 408
BstHHI GCGC 3 cut(s) 129, 407, 1327
BstKTI GATC 6 cut(s) 193, 868, 912, 961, 984, 1136
BstMAI GTCTC 3 cut(s) 638, 919, 1363
BstMBI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
BstMWI GCNNNNNNNGC 4 cut(s) 101, 138, 147, 153
BstNI CCWGG 3 cut(s) 158, 595, 852
BstNSI RCATGY 1 cut(s) 1185
BstPAI GACNNNNGTC 1 cut(s) 997
BstSCI CCNGG 5 cut(s) 156, 328, 329, 593, 850
BstSFI CTRYAG 1 cut(s) 556
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 685, 797, 1309
BstV2I GAAGAC 1 cut(s) 1200
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 845
BsuRI GGCC 4 cut(s) 44, 473, 953, 1364
BtrI CACGTC 1 cut(s) 1097
BtsCI GGATG 5 cut(s) 73, 268, 640, 727, 1038
BtsI GCAGTG 2 cut(s) 27, 536
BtsIMutI CAGTG 7 cut(s) 27, 536, 700, 807, 843, 1116, 1211
Cac8I GCNNGC 4 cut(s) 97, 475, 738, 1183
CfoI GCGC 3 cut(s) 129, 407, 1327
Cfr13I GGNCC 1 cut(s) 731
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 2 cut(s) 26, 88
Csp6I GTAC 3 cut(s) 552, 591, 1106
CviAII CATG 3 cut(s) 247, 1013, 1182
CviQI GTAC 3 cut(s) 552, 591, 1106
DpnI GATC 6 cut(s) 192, 867, 911, 960, 983, 1135
DpnII GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
Eam1104I CTCTTC 3 cut(s) 462, 881, 1128
EarI CTCTTC 3 cut(s) 462, 881, 1128
EciI GGCGGA 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 789
Eco147I AGGCCT 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 731
Eco57I CTGAAG 2 cut(s) 356, 905
Eco88I CYCGRG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 3 cut(s) 156, 593, 850
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 1187
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 3 cut(s) 250, 1016, 1185
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 640, 672
FatI CATG 3 cut(s) 246, 1012, 1181
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 6 cut(s) 117, 130, 148, 699, 786, 1323
FokI GGATG 5 cut(s) 80, 275, 647, 734, 1025
Fsp4HI GCNGC 6 cut(s) 117, 130, 148, 699, 786, 1323
FspBI CTAG 3 cut(s) 185, 714, 1316
GlaI GCGC 3 cut(s) 128, 406, 1326
GluI GCNGC 6 cut(s) 117, 130, 148, 699, 786, 1323
GsuI CTGGAG 1 cut(s) 1016
HaeII RGCGCY 2 cut(s) 130, 408
HaeIII GGCC 4 cut(s) 44, 473, 953, 1364
HapII CCGG 2 cut(s) 138, 330
HgaI GACGC 2 cut(s) 26, 88
HhaI GCGC 3 cut(s) 129, 407, 1327
Hin1II CATG 3 cut(s) 250, 1016, 1185
Hin6I GCGC 3 cut(s) 127, 405, 1325
HinP1I GCGC 3 cut(s) 127, 405, 1325
HincII GTYRAC 1 cut(s) 1253
HindII GTYRAC 1 cut(s) 1253
HpaII CCGG 2 cut(s) 138, 330
HphI GGTGA 2 cut(s) 23, 860
Hpy166II GTNNAC 4 cut(s) 390, 845, 1106, 1253
Hpy188I TCNGA 9 cut(s) 487, 507, 885, 895, 1043, 1128, 1155, 1266, 1372
Hpy188III TCNNGA 4 cut(s) 714, 776, 1022, 1056
Hpy8I GTNNAC 4 cut(s) 390, 845, 1106, 1253
Hpy99I CGWCG 2 cut(s) 20, 104
HpyAV CCTTC 6 cut(s) 185, 205, 340, 722, 811, 943
HpyCH4III ACNGT 3 cut(s) 74, 560, 838
HpyCH4IV ACGT 2 cut(s) 392, 1096
HpyCH4V TGCA 7 cut(s) 412, 770, 807, 1070, 1117, 1181, 1185
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 138, 147, 153
HpySE526I ACGT 2 cut(s) 392, 1096
Hsp92II CATG 3 cut(s) 250, 1016, 1185
HspAI GCGC 3 cut(s) 127, 405, 1325
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
LmnI GCTCC 3 cut(s) 63, 895, 934
Lsp1109I GCAGC 3 cut(s) 685, 797, 1309
LweI GCATC 2 cut(s) 779, 1194
MaeI CTAG 3 cut(s) 185, 714, 1316
MaeII ACGT 2 cut(s) 392, 1096
MaeIII GTNAC 4 cut(s) 11, 88, 349, 1165
MalI GATC 6 cut(s) 192, 867, 911, 960, 983, 1135
MbiI CCGCTC 1 cut(s) 95
MboI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
MflI RGATCY 1 cut(s) 190
MluCI AATT 9 cut(s) 297, 423, 525, 532, 675, 708, 1033, 1045, 1242
MlyI GAGTC 4 cut(s) 422, 439, 921, 1007
MnlI CCTC 8 cut(s) 18, 91, 94, 115, 181, 463, 559, 562
Mph1103I ATGCAT 1 cut(s) 1187
MroXI GAANNNNTTC 1 cut(s) 658
MslI CAYNNNNRTG 3 cut(s) 261, 852, 1011
MspA1I CMGCKG 2 cut(s) 451, 626
MspI CCGG 2 cut(s) 138, 330
MspR9I CCNGG 5 cut(s) 158, 330, 331, 595, 852
MvaI CCWGG 3 cut(s) 158, 595, 852
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 101, 138, 147, 153
NciI CCSGG 2 cut(s) 330, 331
NdeII GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
NlaIII CATG 3 cut(s) 250, 1016, 1185
NlaIV GGNNCC 3 cut(s) 192, 553, 897
NmeAIII GCCGAG 1 cut(s) 1340
NmuCI GTSAC 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 1187
NspI RCATGY 1 cut(s) 1185
OliI CACNNNNGTG 1 cut(s) 852
PaeI GCATGC 1 cut(s) 1185
PceI AGGCCT 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 658
PfeI GAWTC 6 cut(s) 325, 508, 704, 874, 1160, 1306
PflMI CCANNNNNTGG 1 cut(s) 1246
PkrI GCNGC 6 cut(s) 118, 131, 149, 700, 787, 1324
PleI GAGTC 4 cut(s) 422, 439, 921, 1006
PpsI GAGTC 4 cut(s) 422, 439, 921, 1006
PshAI GACNNNNGTC 1 cut(s) 997
Psp6I CCWGG 3 cut(s) 156, 593, 850
PspGI CCWGG 3 cut(s) 156, 593, 850
PspN4I GGNNCC 3 cut(s) 192, 553, 897
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 451, 626
RsaI GTAC 3 cut(s) 553, 592, 1107
RsaNI GTAC 3 cut(s) 552, 591, 1106
RseI CAYNNNNRTG 3 cut(s) 261, 852, 1011
SatI GCNGC 6 cut(s) 117, 130, 148, 699, 786, 1323
Sau3AI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 4 cut(s) 422, 439, 921, 1007
ScrFI CCNGG 5 cut(s) 158, 330, 331, 595, 852
SfaNI GCATC 2 cut(s) 779, 1194
SfcI CTRYAG 1 cut(s) 556
SinI GGWCC 1 cut(s) 731
SmaI CCCGGG 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 261, 852, 1011
SmlI CTYRAG 1 cut(s) 1334
SmoI CTYRAG 1 cut(s) 1334
SpeI ACTAGT 1 cut(s) 1315
SphI GCATGC 1 cut(s) 1185
Sse9I AATT 9 cut(s) 297, 423, 525, 532, 675, 708, 1033, 1045, 1242
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 6 cut(s) 61, 93, 117, 130, 148, 734
SspMI CTAG 3 cut(s) 185, 714, 1316
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 5 cut(s) 156, 328, 329, 593, 850
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 74, 560, 838
TaiI ACGT 2 cut(s) 395, 1099
TaqI TCGA 1 cut(s) 662
TasI AATT 9 cut(s) 297, 423, 525, 532, 675, 708, 1033, 1045, 1242
TauI GCSGC 3 cut(s) 119, 132, 150
TfiI GAWTC 6 cut(s) 325, 508, 704, 874, 1160, 1306
TscAI CASTG 7 cut(s) 27, 543, 700, 807, 843, 1116, 1218
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 3 cut(s) 698, 785, 1322
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 5 cut(s) 327, 359, 537, 738, 995
TspGWI ACGGA 3 cut(s) 76, 483, 1153
TspMI CCCGGG 1 cut(s) 329
TspRI CASTG 7 cut(s) 27, 543, 700, 807, 843, 1116, 1218
Van91I CCANNNNNTGG 1 cut(s) 1246
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 3 cut(s) 532, 1033, 1242
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 1 cut(s) 1185
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 658
XspI CTAG 3 cut(s) 185, 714, 1316
Zsp2I ATGCAT 1 cut(s) 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.