Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005112

Physical Location & Seq

Genomic Coordinates Reverse (-)

29965986 .. 29971110

Gene Structure 5125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCGAAAGGTGACGACGCAGTGAGGAAGAAGCTAAACAAGGCCAACAGGAAAAAGCTACGCAAGGATGACCGTTCTTCCTCCTCCGTTACCGCTCGCGTCGCCTCCATCATTGCCGCCAAAAAGCGCCGCCAGTCAGGCAAACGCCGCAAATGCCAGGGTATGTGCTTTAGCCTTCCTACACTAGAGGATCCCTTCAATGACAGGAATGGTAGAAAGGATTTTGAGAAAGAAACCAAGAAAGTCATGCTTCCACATAGGGATGAGAGTGAGTTTCTCAGGGAAAAATGTAAAGAAATCATTAGAAAGAATGAAAAGGCAAAGAATCCCGGGCTGAAGAATATGAAGGTAACGAGTTTGAAGAATGAGCAGAAGAAATCACTCCCGTTCACGTCTATTGATAGCGCGGTGCAGAGAAGCAGAATTGACTCGGTAAGGACAAAGACTCAGCTGAGTGGGAAACAGGAAGAGGCCTGCGAAAACTCAGATTGTCCGTCCAAGTATCTGATTCGGTGTTTGAATGAAATTGAGAATTCACTGCGTTGTGATGGTACCTACAGTAATGAGGAGGACAAGCCATTATTTGTTAGTACCTGGGGAGTTGAGTTTTGGAAATGTTATTCAGCTGGAAAGGATATATTAGAGACAAGTGGAACTTCTTCGACAATAGAGCAAATTGCATGGATTGTTTCCAGTGCTGCTGATTCAATTTCTAGAAAGGATGAAGAAGGTCCACCAGCGACCAGTCCATTTCTTTTGTTCCTTGTTGCATCTCAGGAGAAAGCAGCCAAGGTGCGTTCAGTGTGCAAACCTTTGAAGGTTCTTGGAATACATACAGTGAGTATACACCCTGGTGCTTCCTTAGATCACCAGATTCAAGGTCTGAAGAGTTCGGAGCCTGAGTTTATGATCTCAACACCTGAGAGACTCTTGGAGCTTCTTTCCTTGAAGGCCATTGATCTATCAGGGGTTTCTTGGCTGATCGTTGATGGACTGGAGTCTTTTCATAAACATGGTTATCTTGATAAAGTAAATTCCATCCGAAATTATATATCCAGAACAACCCATGCAGTTGTTTTTGACGATTGTTTTAGACGTGCCTGTGTACCAGTGGTGCAAACTCTTCTGACGGGATCAGTCCATAGATTATCTCTGAATGATTCCGTCACCAGTCAAAGTGCATGCATCGTTCAGTCAGTAAACATGTCTTCACTGAAAGAAAAACTATCAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD

Protein Analysis

412

Amino Acids

46.14

Weight (kDa)

9.39

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	253 - 352	1e-05	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28600
fragaria_vesca	FvH4_7g06330
malus_domestica	MD02G1244900.v1.1 MD07G1072000.v1.1
prunus_persica	Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1
pyrus_communis	pycom02g21080 pycom07g05500
rosa_chinensis	RchiOBHm_Chr1g0334181
rosa_laevigata	RLG00000029468 RLG00000029472 RLG00000029474
rosa_multiflora	Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970
rosa_rugosa	Rorug01G0113200
rosa_samantha	Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300
rosa_wichuraiana	Rw0G018010 Rw1G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	844
AccII	CGCG	2 cut(s)	99, 407
AciI	CCGC	5 cut(s)	93, 117, 130, 148, 407
AclWI	GGATC	3 cut(s)	185, 198, 1141
AcsI	RAATTY	2 cut(s)	532, 1033
AcuI	CTGAAG	2 cut(s)	356, 905
AfaI	GTAC	3 cut(s)	553, 592, 1107
AflIII	ACRYGT	1 cut(s)	1203
AgsI	TTSAA	7 cut(s)	199, 361, 520, 708, 817, 878, 949
AjiI	CACGTC	2 cut(s)	393, 1097
AjnI	CCWGG	3 cut(s)	156, 593, 850
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	5 cut(s)	34, 58, 451, 626, 937
AluI	AGCT	5 cut(s)	34, 58, 451, 626, 937
Alw26I	GTCTC	2 cut(s)	638, 919
AlwI	GGATC	3 cut(s)	185, 198, 1141
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	3 cut(s)	42, 471, 951
ApeKI	GCWGC	2 cut(s)	698, 785
ApoI	RAATTY	2 cut(s)	532, 1033
Asp700I	GAANNNNTTC	1 cut(s)	658
Asp718I	GGTACC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	129, 407
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	2 cut(s)	330, 331
AsuHPI	GGTGA	3 cut(s)	23, 860, 1159
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	1200
BbvI	GCAGC	2 cut(s)	685, 797
BccI	CCATC	4 cut(s)	116, 542, 983, 1046
BciT130I	CCWGG	3 cut(s)	158, 595, 852
BcnI	CCSGG	2 cut(s)	330, 331
BcoDI	GTCTC	2 cut(s)	638, 919
BfaI	CTAG	2 cut(s)	185, 714
BfmI	CTRYAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	117, 130, 148, 699, 786
BlsI	GCNGC	5 cut(s)	118, 131, 149, 700, 787
Bme1390I	CCNGG	5 cut(s)	158, 330, 331, 595, 852
Bme18I	GGWCC	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	2 cut(s)	393, 1097
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	3 cut(s)	192, 553, 897
BmrFI	CCNGG	5 cut(s)	158, 330, 331, 595, 852
BmsI	GCATC	2 cut(s)	779, 1194
BoxI	GACNNNNGTC	1 cut(s)	997
BpiI	GAAGAC	1 cut(s)	1200
BpmI	CTGGAG	1 cut(s)	1016
BpuMI	CCSGG	2 cut(s)	330, 331
BsaJI	CCNNGG	5 cut(s)	157, 329, 594, 789, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	887, 917
Bse1I	ACTGG	6 cut(s)	133, 693, 744, 999, 1109, 1170
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	3 cut(s)	158, 595, 852
BseDI	CCNNGG	5 cut(s)	157, 329, 594, 789, 850
BseGI	GGATG	4 cut(s)	73, 268, 727, 1038
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	7 cut(s)	292, 443, 461, 498, 788, 891, 912
BseNI	ACTGG	6 cut(s)	133, 693, 744, 999, 1109, 1170
BseRI	GAGGAG	2 cut(s)	73, 581
BseXI	GCAGC	2 cut(s)	685, 797
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	99, 407
BshFI	GGCC	3 cut(s)	44, 473, 953
BshNI	GGYRCC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	638, 919
BsnI	GGCC	3 cut(s)	44, 473, 953
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
BspACI	CCGC	5 cut(s)	93, 117, 130, 148, 407
BspANI	GGCC	3 cut(s)	44, 473, 953
BspCNI	CTCAG	7 cut(s)	291, 444, 460, 497, 787, 892, 913
BspFNI	CGCG	2 cut(s)	99, 407
BspLI	GGNNCC	3 cut(s)	192, 553, 897
BspPI	GGATC	3 cut(s)	185, 198, 1141
BspT107I	GGYRCC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	6 cut(s)	133, 693, 744, 999, 1109, 1170
BssECI	CCNNGG	5 cut(s)	157, 329, 594, 789, 850
BssMI	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
BssNAI	GTATAC	1 cut(s)	845
BssT1I	CCWWGG	1 cut(s)	789
Bst1107I	GTATAC	1 cut(s)	845
Bst2UI	CCWGG	3 cut(s)	158, 595, 852
Bst4CI	ACNGT	3 cut(s)	74, 560, 838
Bst6I	CTCTTC	3 cut(s)	462, 881, 1128
BstC8I	GCNNGC	3 cut(s)	97, 475, 1183
BstDEI	CTNAG	8 cut(s)	278, 447, 452, 484, 774, 862, 900, 921
BstF5I	GGATG	4 cut(s)	73, 268, 727, 1038
BstFNI	CGCG	2 cut(s)	99, 407
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 407
BstKTI	GATC	6 cut(s)	193, 868, 912, 961, 984, 1136
BstMAI	GTCTC	2 cut(s)	638, 919
BstMBI	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 138, 147, 153
BstNI	CCWGG	3 cut(s)	158, 595, 852
BstNSI	RCATGY	2 cut(s)	1185, 1207
BstPAI	GACNNNNGTC	1 cut(s)	997
BstSCI	CCNGG	5 cut(s)	156, 328, 329, 593, 850
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	2 cut(s)	99, 407
BstV1I	GCAGC	2 cut(s)	685, 797
BstV2I	GAAGAC	1 cut(s)	1200
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	845
BsuRI	GGCC	3 cut(s)	44, 473, 953
BtrI	CACGTC	2 cut(s)	393, 1097
BtsCI	GGATG	4 cut(s)	73, 268, 727, 1038
BtsI	GCAGTG	2 cut(s)	27, 536
BtsIMutI	CAGTG	7 cut(s)	27, 536, 700, 807, 843, 1116, 1211
Cac8I	GCNNGC	3 cut(s)	97, 475, 1183
CfoI	GCGC	2 cut(s)	129, 407
Cfr13I	GGNCC	1 cut(s)	731
Cfr9I	CCCGGG	1 cut(s)	329
CseI	GACGC	2 cut(s)	26, 88
Csp6I	GTAC	3 cut(s)	552, 591, 1106
CviAII	CATG	6 cut(s)	247, 681, 1013, 1067, 1182, 1204
CviQI	GTAC	3 cut(s)	552, 591, 1106
DdeI	CTNAG	8 cut(s)	278, 447, 452, 484, 774, 862, 900, 921
DpnI	GATC	6 cut(s)	192, 867, 911, 960, 983, 1135
DpnII	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
Eam1104I	CTCTTC	3 cut(s)	462, 881, 1128
EarI	CTCTTC	3 cut(s)	462, 881, 1128
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	356, 905
Eco88I	CYCGRG	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	156, 593, 850
EcoT14I	CCWWGG	1 cut(s)	789
EcoT22I	ATGCAT	1 cut(s)	1187
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	6 cut(s)	250, 684, 1016, 1070, 1185, 1207
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 640, 672
FatI	CATG	6 cut(s)	246, 680, 1012, 1066, 1181, 1203
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	5 cut(s)	117, 130, 148, 699, 786
FokI	GGATG	4 cut(s)	80, 275, 734, 1025
Fsp4HI	GCNGC	5 cut(s)	117, 130, 148, 699, 786
FspBI	CTAG	2 cut(s)	185, 714
GlaI	GCGC	2 cut(s)	128, 406
GluI	GCNGC	5 cut(s)	117, 130, 148, 699, 786
GsuI	CTGGAG	1 cut(s)	1016
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	44, 473, 953
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	2 cut(s)	26, 88
HhaI	GCGC	2 cut(s)	129, 407
Hin1II	CATG	6 cut(s)	250, 684, 1016, 1070, 1185, 1207
Hin6I	GCGC	2 cut(s)	127, 405
HinP1I	GCGC	2 cut(s)	127, 405
HinfI	GANTC	9 cut(s)	325, 428, 445, 508, 704, 874, 927, 998, 1160
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	23, 860, 1159
Hpy166II	GTNNAC	5 cut(s)	390, 734, 845, 1106, 1201
Hpy188I	TCNGA	7 cut(s)	487, 507, 885, 895, 1043, 1128, 1155
Hpy188III	TCNNGA	4 cut(s)	714, 776, 1022, 1056
Hpy8I	GTNNAC	5 cut(s)	390, 734, 845, 1106, 1201
Hpy99I	CGWCG	2 cut(s)	20, 104
HpyAV	CCTTC	6 cut(s)	185, 205, 340, 722, 811, 943
HpyCH4III	ACNGT	3 cut(s)	74, 560, 838
HpyCH4IV	ACGT	2 cut(s)	392, 1096
HpyCH4V	TGCA	8 cut(s)	412, 680, 770, 807, 1070, 1117, 1181, 1185
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 138, 147, 153
HpyF3I	CTNAG	8 cut(s)	278, 447, 452, 484, 774, 862, 900, 921
HpySE526I	ACGT	2 cut(s)	392, 1096
Hsp92II	CATG	6 cut(s)	250, 684, 1016, 1070, 1185, 1207
HspAI	GCGC	2 cut(s)	127, 405
KpnI	GGTACC	1 cut(s)	555
Kzo9I	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
LmnI	GCTCC	2 cut(s)	895, 934
Lsp1109I	GCAGC	2 cut(s)	685, 797
LweI	GCATC	2 cut(s)	779, 1194
MaeI	CTAG	2 cut(s)	185, 714
MaeII	ACGT	2 cut(s)	392, 1096
MaeIII	GTNAC	4 cut(s)	11, 88, 349, 1165
MalI	GATC	6 cut(s)	192, 867, 911, 960, 983, 1135
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	7 cut(s)	423, 525, 532, 675, 708, 1033, 1045
MlyI	GAGTC	4 cut(s)	422, 439, 921, 1007
MnlI	CCTC	8 cut(s)	18, 91, 94, 115, 181, 463, 559, 562
Mph1103I	ATGCAT	1 cut(s)	1187
MroXI	GAANNNNTTC	1 cut(s)	658
MslI	CAYNNNNRTG	3 cut(s)	261, 852, 1011
MspA1I	CMGCKG	2 cut(s)	451, 626
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	5 cut(s)	158, 330, 331, 595, 852
MvaI	CCWGG	3 cut(s)	158, 595, 852
MvnI	CGCG	2 cut(s)	99, 407
MwoI	GCNNNNNNNGC	4 cut(s)	101, 138, 147, 153
NciI	CCSGG	2 cut(s)	330, 331
NdeII	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
NlaIII	CATG	6 cut(s)	250, 684, 1016, 1070, 1185, 1207
NlaIV	GGNNCC	3 cut(s)	192, 553, 897
NmuCI	GTSAC	2 cut(s)	11, 1165
NsiI	ATGCAT	1 cut(s)	1187
NspI	RCATGY	2 cut(s)	1185, 1207
OliI	CACNNNNGTG	1 cut(s)	852
PaeI	GCATGC	1 cut(s)	1185
PceI	AGGCCT	1 cut(s)	473
PciI	ACATGT	1 cut(s)	1203
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	5 cut(s)	325, 508, 704, 874, 1160
PkrI	GCNGC	5 cut(s)	118, 131, 149, 700, 787
PleI	GAGTC	4 cut(s)	422, 439, 921, 1006
PpsI	GAGTC	4 cut(s)	422, 439, 921, 1006
PscI	ACATGT	1 cut(s)	1203
PshAI	GACNNNNGTC	1 cut(s)	997
Psp6I	CCWGG	3 cut(s)	156, 593, 850
PspGI	CCWGG	3 cut(s)	156, 593, 850
PspN4I	GGNNCC	3 cut(s)	192, 553, 897
PspPI	GGNCC	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	451, 626
RsaI	GTAC	3 cut(s)	553, 592, 1107
RsaNI	GTAC	3 cut(s)	552, 591, 1106
RseI	CAYNNNNRTG	3 cut(s)	261, 852, 1011
SatI	GCNGC	5 cut(s)	117, 130, 148, 699, 786
Sau3AI	GATC	6 cut(s)	190, 865, 909, 958, 981, 1133
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	4 cut(s)	422, 439, 921, 1007
ScrFI	CCNGG	5 cut(s)	158, 330, 331, 595, 852
SfaNI	GCATC	2 cut(s)	779, 1194
SfcI	CTRYAG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	731
SmaI	CCCGGG	1 cut(s)	331
SmiMI	CAYNNNNRTG	3 cut(s)	261, 852, 1011
SphI	GCATGC	1 cut(s)	1185
Sse9I	AATT	7 cut(s)	423, 525, 532, 675, 708, 1033, 1045
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	5 cut(s)	93, 117, 130, 148, 407
SspMI	CTAG	2 cut(s)	185, 714
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	5 cut(s)	156, 328, 329, 593, 850
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	3 cut(s)	74, 560, 838
TaiI	ACGT	2 cut(s)	395, 1099
TaqI	TCGA	1 cut(s)	662
TasI	AATT	7 cut(s)	423, 525, 532, 675, 708, 1033, 1045
TauI	GCSGC	3 cut(s)	119, 132, 150
TfiI	GAWTC	5 cut(s)	325, 508, 704, 874, 1160
TscAI	CASTG	7 cut(s)	27, 543, 700, 807, 843, 1116, 1218
TseFI	GTSAC	2 cut(s)	11, 1165
TseI	GCWGC	2 cut(s)	698, 785
Tsp45I	GTSAC	2 cut(s)	11, 1165
TspDTI	ATGAA	5 cut(s)	327, 359, 537, 738, 995
TspGWI	ACGGA	3 cut(s)	76, 483, 1153
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	7 cut(s)	27, 543, 700, 807, 843, 1116, 1218
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	2 cut(s)	532, 1033
XbaI	TCTAGA	1 cut(s)	713
XceI	RCATGY	2 cut(s)	1185, 1207
XmaI	CCCGGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	658
XspI	CTAG	2 cut(s)	185, 714
Zsp2I	ATGCAT	1 cut(s)	1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.