Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008928.1

Orthogroup ID

OG0005112

Physical Location & Seq

Genomic Coordinates Reverse (-)

2994 .. 3622

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008928.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ctgggtcaaccttttgctcaggtttcaaaggtgctatatgtagtagggaaagatagccagaatcataaactagttgctgcgctaaaactcaagggtcattccatctcatttgtctcggcctgttcagaagttgggaacagtatggagttgaagggcaagatgaagcctgcagtgtccatgattgatgcagaccaaattcataccagcgagttgggtgaatatgaatgtgtagttatatacgattgtactctatccattgaaagttatgttcgaatcctcacaaacatggcccgttacactgtgaatggtgtattgcataccttttttaccacagaagatgcaaaacttgccggaccattgatcaagatccttgagcaatgtgggcagtcagtgcctgaagcgctacgaaaaatgtctctttcatcagccatgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD

Protein Analysis

145

Amino Acids

15.81

Weight (kDa)

7.06

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28600
fragaria_vesca	FvH4_7g06330
malus_domestica	MD02G1244900.v1.1 MD07G1072000.v1.1
prunus_persica	Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1
pyrus_communis	pycom02g21080 pycom07g05500
rosa_chinensis	RchiOBHm_Chr1g0334181
rosa_laevigata	RLG00000029468 RLG00000029472 RLG00000029474
rosa_multiflora	Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970
rosa_rugosa	Rorug01G0113200
rosa_samantha	Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300
rosa_wichuraiana	Rw0G018010 Rw1G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	247
AfeI	AGCGCT	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	27, 151, 260
AhlI	ACTAGT	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	118, 420
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor51HI	AGCGCT	1 cut(s)	402
AoxI	GGCC	2 cut(s)	117, 288
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	82, 403
AspS9I	GGNCC	2 cut(s)	289, 353
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	110
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	118, 420
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	404
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	289, 353
BmsI	GCATC	2 cut(s)	175, 328
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	2 cut(s)	74, 392
BsaBI	GATNNNNATC	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	365
BseJI	GATNNNNATC	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	119, 290
BsiSI	CCGG	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	118, 420
BsnI	GGCC	2 cut(s)	119, 290
Bsp119I	TTCGAA	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	360, 366
BspANI	GGCC	2 cut(s)	119, 290
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	383
BssMI	GATC	2 cut(s)	360, 366
Bst4CI	ACNGT	2 cut(s)	140, 301
BstAPI	GCANNNNNTGC	2 cut(s)	347, 391
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	2 cut(s)	82, 403
BstKTI	GATC	2 cut(s)	363, 369
BstMAI	GTCTC	2 cut(s)	118, 420
BstMBI	GATC	2 cut(s)	360, 366
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 382, 391, 400
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	366
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	119, 290
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	177, 297, 396
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	2 cut(s)	82, 403
Cfr13I	GGNCC	2 cut(s)	289, 353
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	3 cut(s)	178, 286, 430
CviJI	RGCY	5 cut(s)	57, 119, 166, 290, 428
CviKI_1	RGCY	5 cut(s)	57, 119, 166, 290, 428
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	362, 368
DpnII	GATC	2 cut(s)	360, 366
Eco47I	GGWCC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	417
FaeI	CATG	3 cut(s)	181, 289, 433
FatI	CATG	3 cut(s)	177, 285, 429
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	2 cut(s)	81, 402
GluI	GCNGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	119, 290
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	82, 403
Hin1II	CATG	3 cut(s)	181, 289, 433
Hin6I	GCGC	2 cut(s)	80, 401
HinP1I	GCGC	2 cut(s)	80, 401
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	61, 273
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	140, 301
HpyCH4V	TGCA	4 cut(s)	170, 188, 316, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 382, 391, 400
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	181, 289, 433
HspAI	GCGC	2 cut(s)	80, 401
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 366
LpnPI	CCDG	7 cut(s)	5, 71, 133, 180, 217, 364, 408
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	175, 328
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	362, 368
MboI	GATC	2 cut(s)	360, 366
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	347, 382, 391, 400
NdeII	GATC	2 cut(s)	360, 366
NlaIII	CATG	3 cut(s)	181, 289, 433
NmeAIII	GCCGAG	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	61, 273
PkrI	GCNGC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	289, 353
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	284
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	360, 366
Sau96I	GGNCC	2 cut(s)	289, 353
SetI	ASST	4 cut(s)	13, 24, 33, 323
SfaNI	GCATC	2 cut(s)	175, 328
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	89, 371
SmoI	CTYRAG	2 cut(s)	89, 371
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	140, 301
TaqI	TCGA	1 cut(s)	271
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	61, 273
TscAI	CASTG	3 cut(s)	177, 304, 396
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	4 cut(s)	176, 188, 237, 411
TspRI	CASTG	3 cut(s)	177, 304, 396
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.