Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005112

Physical Location & Seq

Genomic Coordinates Forward (+)

39218508 .. 39220347

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAACTCCAAAACGGAGCATCACAAATTCACAATCCATGACGAGTTATCTAAGGACGAGTTGTTCAAAAACATAAAAGGAAGCAGAAGTGAAGCTAGCTCAGTCTCGAAACCAAAGATCCAAAGGGTTTCTGACATGCTCCGAGATCACCCAAAGTTCAAGAAGTACTATGATTGGCCGTCAAGCTATGTTTGCGAAATCATTGAGGACAACATCAAAACACTGAAGGACGACTATGATGAGGAAGCAACAAGGTCCTACACCGATGAGGCCCTCACACTTGTTGTTCTTGGATGGATGTTCAACCTTACAATGTTCCTTGTAACAAAATCATCGATTGTGTTCTTCAAGTCCTCTTTGTCACTTAAGCTCATCAACTGCTTGAGGACTCGGACCTTGTTGCTTCTTCATCATAACAGTCCTCTCCTTGGTGTTCTAGCAGCTCAGGGGTTAATCGGCATCCAGACTTCGTACACAATCAGTTCTCCGTCCACTGCCTGTGATGCTGCAGTCCAAATTCTGGTTCAACCTTTTGTCAGGCTTCAAAGAAGTTGGGAACAGACCAAAATACCAGCGAGTTGGGTGAATATGAATGTGATTCTCTCCGTTGACGGTCATATTCAAATCCTCACAAACATGGCCCGTTACACTGTGAATGGTGTGCTGCATAGATTTTTACCACAGAAGACGCAAAACTTGCTGGAGCATTCATCAAGATCCTTGAGCAAAGTGGGCAGTAAGCCTGAAGCACTACGAGAAATGTCTGTTTCATCAGCCATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

262

Amino Acids

29.63

Weight (kDa)

9.15

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28600
fragaria_vesca	FvH4_7g06330
malus_domestica	MD02G1244900.v1.1 MD07G1072000.v1.1
prunus_persica	Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1
pyrus_communis	pycom02g21080 pycom07g05500
rosa_chinensis	RchiOBHm_Chr1g0334181
rosa_laevigata	RLG00000029468 RLG00000029472 RLG00000029474
rosa_multiflora	Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970
rosa_rugosa	Rorug01G0113200
rosa_samantha	Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300
rosa_wichuraiana	Rw0G018010 Rw1G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	520
AclWI	GGATC	2 cut(s)	112, 711
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	26, 516
AcuI	CTGAAG	2 cut(s)	245, 765
AfaI	GTAC	2 cut(s)	167, 473
AfiI	CCNNNNNNNGG	2 cut(s)	428, 520
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	7 cut(s)	67, 160, 304, 349, 527, 545, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	5 cut(s)	95, 99, 186, 370, 443
AluI	AGCT	5 cut(s)	95, 99, 186, 370, 443
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	112, 711
AoxI	GGCC	3 cut(s)	176, 270, 639
ApeKI	GCWGC	3 cut(s)	440, 506, 664
ApoI	RAATTY	2 cut(s)	26, 516
AspS9I	GGNCC	4 cut(s)	255, 271, 393, 640
AsuHPI	GGTGA	2 cut(s)	140, 595
AsuNHI	GCTAGC	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	255, 393
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	3 cut(s)	452, 493, 651
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	96, 437
BfmI	CTRYAG	1 cut(s)	507
BfrI	CTTAAG	1 cut(s)	365
BisI	GCNGC	3 cut(s)	441, 507, 665
BlsI	GCNGC	3 cut(s)	442, 508, 666
BmcAI	AGTACT	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	255, 393
BmgT120I	GGNCC	4 cut(s)	255, 271, 393, 640
BmsI	GCATC	3 cut(s)	28, 468, 493
BmtI	GCTAGC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	403, 742
Bsa29I	ATCGAT	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 520
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	3 cut(s)	299, 303, 459
BseLI	CCNNNNNNNGG	2 cut(s)	428, 520
BseMII	CTCAG	2 cut(s)	114, 458
BseXI	GCAGC	3 cut(s)	452, 493, 651
BshFI	GGCC	3 cut(s)	178, 272, 641
BshVI	ATCGAT	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	428, 520
BsmAI	GTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	178, 272, 641
Bsp143I	GATC	3 cut(s)	117, 145, 716
BspANI	GGCC	3 cut(s)	178, 272, 641
BspCNI	CTCAG	2 cut(s)	113, 457
BspDI	ATCGAT	1 cut(s)	335
BspMAI	CTGCAG	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	112, 711
BspTI	CTTAAG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	117, 145, 716
BssT1I	CCWWGG	1 cut(s)	427
Bst4CI	ACNGT	3 cut(s)	419, 614, 652
BstAFI	CTTAAG	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	51, 100, 444
BstF5I	GGATG	3 cut(s)	299, 303, 459
BstKTI	GATC	3 cut(s)	120, 148, 719
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	117, 145, 716
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 503, 697, 732
BstNSI	RCATGY	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	452, 493, 651
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	2 cut(s)	117, 716
BstXI	CCANNNNNNTGG	1 cut(s)	579
BstYI	RGATCY	2 cut(s)	117, 716
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	178, 272, 641
BsuTUI	ATCGAT	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	299, 303, 459
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	221, 492, 648
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	4 cut(s)	255, 271, 393, 640
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	166, 472
CviAII	CATG	4 cut(s)	38, 136, 637, 778
CviQI	GTAC	2 cut(s)	166, 472
DdeI	CTNAG	3 cut(s)	51, 100, 444
DpnI	GATC	3 cut(s)	119, 147, 718
DpnII	GATC	3 cut(s)	117, 145, 716
EaeI	YGGCCR	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	427
Eco47I	GGWCC	2 cut(s)	255, 393
Eco57I	CTGAAG	2 cut(s)	245, 765
EcoO109I	RGGNCCY	2 cut(s)	255, 271
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	41, 139, 640, 781
FatI	CATG	4 cut(s)	37, 135, 636, 777
Fnu4HI	GCNGC	3 cut(s)	441, 507, 665
FokI	GGATG	3 cut(s)	306, 310, 446
Fsp4HI	GCNGC	3 cut(s)	441, 507, 665
FspBI	CTAG	2 cut(s)	96, 437
GluI	GCNGC	3 cut(s)	441, 507, 665
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	3 cut(s)	178, 272, 641
HgaI	GACGC	1 cut(s)	697
Hin1II	CATG	4 cut(s)	41, 139, 640, 781
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	2 cut(s)	388, 598
HphI	GGTGA	2 cut(s)	140, 595
Hpy166II	GTNNAC	3 cut(s)	474, 492, 610
Hpy188I	TCNGA	3 cut(s)	133, 143, 393
Hpy188III	TCNNGA	4 cut(s)	106, 160, 463, 714
Hpy8I	GTNNAC	3 cut(s)	474, 492, 610
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	3 cut(s)	419, 614, 652
HpyCH4V	TGCA	2 cut(s)	509, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 503, 697, 732
HpyF3I	CTNAG	3 cut(s)	51, 100, 444
Hsp92II	CATG	4 cut(s)	41, 139, 640, 781
Kzo9I	GATC	3 cut(s)	117, 145, 716
LmnI	GCTCC	3 cut(s)	16, 144, 703
LpnPI	CCDG	8 cut(s)	431, 476, 506, 511, 523, 585, 686, 756
Lsp1109I	GCAGC	3 cut(s)	452, 493, 651
LweI	GCATC	3 cut(s)	28, 468, 493
MaeI	CTAG	2 cut(s)	96, 437
MaeIII	GTNAC	3 cut(s)	322, 360, 644
MalI	GATC	3 cut(s)	119, 147, 718
MboI	GATC	3 cut(s)	117, 145, 716
MboII	GAAGA	3 cut(s)	337, 398, 697
MflI	RGATCY	2 cut(s)	117, 716
MluCI	AATT	2 cut(s)	26, 516
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	8 cut(s)	199, 235, 262, 284, 364, 378, 432, 638
MseI	TTAA	2 cut(s)	366, 452
MslI	CAYNNNNRTG	1 cut(s)	635
MspCI	CTTAAG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	706
MwoI	GCNNNNNNNGC	4 cut(s)	192, 503, 697, 732
NdeII	GATC	3 cut(s)	117, 145, 716
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	41, 139, 640, 781
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	139
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	442, 508, 666
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	255
PspPI	GGNCC	4 cut(s)	255, 271, 393, 640
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	117, 716
RsaI	GTAC	2 cut(s)	167, 473
RsaNI	GTAC	2 cut(s)	166, 472
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	366, 452
SatI	GCNGC	3 cut(s)	441, 507, 665
Sau3AI	GATC	3 cut(s)	117, 145, 716
Sau96I	GGNCC	4 cut(s)	255, 271, 393, 640
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	382
SetI	ASST	9 cut(s)	97, 101, 188, 257, 309, 372, 398, 445, 532
SfaNI	GCATC	3 cut(s)	28, 468, 493
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	255, 393
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	3 cut(s)	365, 382, 721
SmoI	CTYRAG	3 cut(s)	365, 382, 721
Sse9I	AATT	2 cut(s)	26, 516
SspMI	CTAG	2 cut(s)	96, 437
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	419, 614, 652
TaqI	TCGA	2 cut(s)	107, 335
TasI	AATT	2 cut(s)	26, 516
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	2 cut(s)	366, 452
Tru9I	TTAA	2 cut(s)	366, 452
TscAI	CASTG	3 cut(s)	228, 499, 655
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	3 cut(s)	440, 506, 664
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	5 cut(s)	17, 398, 605, 699, 759
TspGWI	ACGGA	3 cut(s)	29, 477, 595
TspRI	CASTG	3 cut(s)	228, 499, 655
Van91I	CCANNNNNTGG	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	255, 393
XapI	RAATTY	2 cut(s)	26, 516
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	2 cut(s)	96, 437
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.