Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005112

Physical Location & Seq

Genomic Coordinates Reverse (-)

6402346 .. 6405670

Gene Structure 3325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCGAAAGGCGACGACGCAATCAGGAAGAAGCTGAACAAGGCCAACAGGAAGAAGCTCCGCAAGGACGACCGCTCTTCCTCCTCCGTTACTGCTCGCGTCGCCTCCATTATCGCCGCCAAGAAGCGCCGCCAGTCCGGCAAACGCCGCAAATGCCAGGGTATGTGCTTTAGCCTTCCTACACTAGAGGATCCCTTCAATGACAGGAATGGTAAAAAGGATTTTGAAAAAGTTACCAAGAAGGTCATGCTTCCGCATAGGGACGAGACTGAGTTTCTCAGGGAGAAATGTAAAGAAATTATGAGAAAGAACGAGAAGGCGAAGAATCCGGGGTTGAAAAATATGAAGGTGACGAGTGTGAAGAATGAGCAGAAGAAATCGTCTATTGATAGCGCAGTACAGAAAAGCAGAATAGACTCAGTAAAGACAAAGGCTCAGCTGAGTGGGGAACAGGAAAAGGCCTGCGAAAGCTCAGATTGTCCATCCAAGTATCTGATTCGGTGTTTGAATGAAATTGAAAATTCACTGCGTTGTGATGGTACCTATTGTAATGAGGAGGGCAAGCCTTTATTTGTTAGTACCTGGGGAGTTGAGTTTTGGAAATGCTATTCTGCTGGGAAGGATATATTAGAGACTAGTGGAACTTCTTCGACAATAGAGAAAATTGCATGGATTGTTTCCAGTGCTGCTGATTCAATTTCTAGAAAGGATGAAGAAGGTCCATCTGCCACCAGTCCATTTCTTTTGTTCCTTGTTGCATCTCAGGAGAAAGCCGCCAAGATACGTTCAGTGTGCAAACCTTTGAAGGTTCTTGGAATACATACAGTGAGTATACACCCTGGTGCTTCCTTAGATCACCAGATTCAAGGTCTGAAGAGTTCGGAGCCTGAGTTTATGATCTCAACACCTGAGAGGCTCGTGGAGCTTCTTTCCTTGAAGGCCATTGATCTATCAGGGGTTTCTTGGCTGATCGTTGATGGACTGGAGTCTTTTCATAAACAAGGTTATTTTGATAAAGTAAATTCCATCCGAAATTATATATCCAGAACAAGCCGTACAGTTGTTTTTGATGATTGTCTTAGACGTGCGTGCATACCAGTGGTGCAAACTCTTCCGATTGGATCAGTCCATAGCCTTTTTACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD

Protein Analysis

383

Amino Acids

42.7

Weight (kDa)

9.46

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28600
fragaria_vesca	FvH4_7g06330
malus_domestica	MD02G1244900.v1.1 MD07G1072000.v1.1
prunus_persica	Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1 Prupe.2G090100_v2.0.a1
pyrus_communis	pycom02g21080 pycom07g05500
rosa_chinensis	RchiOBHm_Chr1g0334181
rosa_laevigata	RLG00000029468 RLG00000029472 RLG00000029474
rosa_multiflora	Rmu_sc0003496.1_g000001 Rmu_sc0008928.1_g000002 Rmu_sc0032811.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316940 Rroxscaffold_4G00316960 Rroxscaffold_4G00316970
rosa_rugosa	Rorug01G0113200
rosa_samantha	Rh1AG137100 Rh1AG137300 Rh1BG104600 Rh1CG129300 Rh1CG129500 Rh1DG142300
rosa_wichuraiana	Rw0G018010 Rw1G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	832
AccII	CGCG	1 cut(s)	99
AciI	CCGC	7 cut(s)	61, 73, 117, 130, 148, 254, 774
AclWI	GGATC	3 cut(s)	185, 198, 1129
AcsI	RAATTY	2 cut(s)	520, 1021
AcuI	CTGAAG	1 cut(s)	893
AfaI	GTAC	4 cut(s)	399, 541, 580, 1057
AgsI	TTSAA	9 cut(s)	199, 227, 337, 508, 518, 696, 805, 866, 937
AhlI	ACTAGT	1 cut(s)	635
AjiI	CACGTC	1 cut(s)	1085
AjnI	CCWGG	3 cut(s)	156, 581, 838
AleI	CACNNNNGTG	1 cut(s)	840
AluBI	AGCT	5 cut(s)	34, 58, 439, 471, 925
AluI	AGCT	5 cut(s)	34, 58, 439, 471, 925
Alw26I	GTCTC	2 cut(s)	260, 626
AlwI	GGATC	3 cut(s)	185, 198, 1129
AoxI	GGCC	3 cut(s)	42, 459, 939
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	2 cut(s)	520, 1021
Asp700I	GAANNNNTTC	1 cut(s)	646
Asp718I	GGTACC	1 cut(s)	539
AspLEI	GCGC	2 cut(s)	129, 395
AspS9I	GGNCC	1 cut(s)	719
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	361, 848
AvaII	GGWCC	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	917
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	5 cut(s)	490, 530, 730, 971, 1034
BceAI	ACGGC	1 cut(s)	1038
BciT130I	CCWGG	3 cut(s)	158, 583, 840
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	260, 626
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	3 cut(s)	185, 636, 702
BfoI	RGCGCY	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	117, 130, 148, 687, 774
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	5 cut(s)	118, 131, 149, 688, 775
Bme1390I	CCNGG	4 cut(s)	158, 330, 583, 840
Bme18I	GGWCC	1 cut(s)	719
BmgBI	CACGTC	1 cut(s)	1085
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	3 cut(s)	192, 541, 885
BmrFI	CCNGG	4 cut(s)	158, 330, 583, 840
BmsI	GCATC	1 cut(s)	767
BoxI	GACNNNNGTC	1 cut(s)	985
BpmI	CTGGAG	1 cut(s)	1004
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	157, 329, 582, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	875, 905
Bse1I	ACTGG	5 cut(s)	133, 681, 732, 987, 1097
BseBI	CCWGG	3 cut(s)	158, 583, 840
BseDI	CCNNGG	4 cut(s)	157, 329, 582, 838
BseGI	GGATG	3 cut(s)	482, 715, 1026
BseMII	CTCAG	9 cut(s)	261, 292, 431, 432, 449, 486, 776, 879, 900
BseNI	ACTGG	5 cut(s)	133, 681, 732, 987, 1097
BseRI	GAGGAG	2 cut(s)	73, 569
BseXI	GCAGC	1 cut(s)	673
BseYI	CCCAGC	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	44, 461, 941
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	138, 329
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	260, 626
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	44, 461, 941
Bsp143I	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	7 cut(s)	61, 73, 117, 130, 148, 254, 774
BspANI	GGCC	3 cut(s)	44, 461, 941
BspCNI	CTCAG	9 cut(s)	262, 291, 431, 432, 448, 485, 775, 880, 901
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	192, 541, 885
BspPI	GGATC	3 cut(s)	185, 198, 1129
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	75
BsrI	ACTGG	5 cut(s)	133, 681, 732, 987, 1097
BssECI	CCNNGG	4 cut(s)	157, 329, 582, 838
BssMI	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
BssNAI	GTATAC	1 cut(s)	833
BssSI	CACGAG	1 cut(s)	917
Bst1107I	GTATAC	1 cut(s)	833
Bst2BI	CACGAG	1 cut(s)	917
Bst2UI	CCWGG	3 cut(s)	158, 583, 840
Bst4CI	ACNGT	2 cut(s)	826, 1060
Bst6I	CTCTTC	3 cut(s)	82, 869, 1116
BstC8I	GCNNGC	4 cut(s)	97, 463, 563, 1090
BstF5I	GGATG	3 cut(s)	482, 715, 1026
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 395
BstKTI	GATC	6 cut(s)	193, 856, 900, 949, 972, 1124
BstMAI	GTCTC	2 cut(s)	260, 626
BstMBI	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 138, 147, 153, 922
BstNI	CCWGG	3 cut(s)	158, 583, 840
BstPAI	GACNNNNGTC	1 cut(s)	985
BstSCI	CCNGG	4 cut(s)	156, 328, 581, 838
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	673
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	44, 461, 941
BtrI	CACGTC	1 cut(s)	1085
BtsCI	GGATG	3 cut(s)	482, 715, 1026
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	5 cut(s)	524, 688, 795, 831, 1104
Cac8I	GCNNGC	4 cut(s)	97, 463, 563, 1090
CfoI	GCGC	2 cut(s)	129, 395
Cfr13I	GGNCC	1 cut(s)	719
CseI	GACGC	2 cut(s)	26, 88
Csp6I	GTAC	4 cut(s)	398, 540, 579, 1056
CviAII	CATG	2 cut(s)	247, 669
CviQI	GTAC	4 cut(s)	398, 540, 579, 1056
DpnI	GATC	6 cut(s)	192, 855, 899, 948, 971, 1123
DpnII	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
Eam1104I	CTCTTC	3 cut(s)	82, 869, 1116
EarI	CTCTTC	3 cut(s)	82, 869, 1116
Eco147I	AGGCCT	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	893
EcoRII	CCWGG	3 cut(s)	156, 581, 838
FaeI	CATG	2 cut(s)	250, 672
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	246, 668
FblI	GTMKAC	1 cut(s)	832
Fnu4HI	GCNGC	5 cut(s)	117, 130, 148, 687, 774
FokI	GGATG	3 cut(s)	469, 722, 1013
Fsp4HI	GCNGC	5 cut(s)	117, 130, 148, 687, 774
FspBI	CTAG	3 cut(s)	185, 636, 702
GlaI	GCGC	2 cut(s)	128, 394
GluI	GCNGC	5 cut(s)	117, 130, 148, 687, 774
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	1004
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	44, 461, 941
HapII	CCGG	2 cut(s)	138, 329
HgaI	GACGC	2 cut(s)	26, 88
HhaI	GCGC	2 cut(s)	129, 395
Hin1II	CATG	2 cut(s)	250, 672
Hin6I	GCGC	2 cut(s)	127, 393
HinP1I	GCGC	2 cut(s)	127, 393
HinfI	GANTC	6 cut(s)	325, 416, 496, 692, 862, 986
HpaII	CCGG	2 cut(s)	138, 329
HphI	GGTGA	2 cut(s)	361, 848
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188I	TCNGA	6 cut(s)	475, 495, 873, 883, 1031, 1116
Hpy188III	TCNNGA	4 cut(s)	25, 702, 764, 1044
Hpy8I	GTNNAC	1 cut(s)	833
Hpy99I	CGWCG	3 cut(s)	17, 20, 104
HpyAV	CCTTC	9 cut(s)	185, 205, 235, 310, 340, 613, 710, 799, 931
HpyCH4III	ACNGT	2 cut(s)	826, 1060
HpyCH4IV	ACGT	2 cut(s)	784, 1084
HpyCH4V	TGCA	5 cut(s)	668, 758, 795, 1092, 1105
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 138, 147, 153, 922
HpySE526I	ACGT	2 cut(s)	784, 1084
Hsp92II	CATG	2 cut(s)	250, 672
HspAI	GCGC	2 cut(s)	127, 393
KpnI	GGTACC	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	3 cut(s)	63, 883, 922
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	1 cut(s)	767
MaeI	CTAG	3 cut(s)	185, 636, 702
MaeII	ACGT	2 cut(s)	784, 1084
MaeIII	GTNAC	3 cut(s)	88, 232, 349
MalI	GATC	6 cut(s)	192, 855, 899, 948, 971, 1123
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	7 cut(s)	297, 513, 520, 663, 696, 1021, 1033
MlyI	GAGTC	2 cut(s)	410, 995
MnlI	CCTC	7 cut(s)	91, 94, 115, 181, 547, 550, 906
MroXI	GAANNNNTTC	1 cut(s)	646
MseI	TTAA	1 cut(s)	1147
MslI	CAYNNNNRTG	2 cut(s)	840, 1097
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	2 cut(s)	138, 329
MspR9I	CCNGG	4 cut(s)	158, 330, 583, 840
MvaI	CCWGG	3 cut(s)	158, 583, 840
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	101, 138, 147, 153, 922
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
NlaIII	CATG	2 cut(s)	250, 672
NlaIV	GGNNCC	3 cut(s)	192, 541, 885
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	840
PceI	AGGCCT	1 cut(s)	461
PciSI	GCTCTTC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	4 cut(s)	325, 496, 692, 862
PkrI	GCNGC	5 cut(s)	118, 131, 149, 688, 775
PleI	GAGTC	2 cut(s)	410, 994
PpsI	GAGTC	2 cut(s)	410, 994
PshAI	GACNNNNGTC	1 cut(s)	985
Psp6I	CCWGG	3 cut(s)	156, 581, 838
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	3 cut(s)	156, 581, 838
PspN4I	GGNNCC	3 cut(s)	192, 541, 885
PspPI	GGNCC	1 cut(s)	719
PsrI	GAACNNNNNNTAC	2 cut(s)	1039, 1071
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	4 cut(s)	399, 541, 580, 1057
RsaNI	GTAC	4 cut(s)	398, 540, 579, 1056
RseI	CAYNNNNRTG	2 cut(s)	840, 1097
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	1147
SatI	GCNGC	5 cut(s)	117, 130, 148, 687, 774
Sau3AI	GATC	6 cut(s)	190, 853, 897, 946, 969, 1121
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	2 cut(s)	410, 995
ScrFI	CCNGG	4 cut(s)	158, 330, 583, 840
SfaNI	GCATC	1 cut(s)	767
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	840, 1097
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	7 cut(s)	297, 513, 520, 663, 696, 1021, 1033
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	7 cut(s)	61, 73, 117, 130, 148, 254, 774
SspMI	CTAG	3 cut(s)	185, 636, 702
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	4 cut(s)	156, 328, 581, 838
TaaI	ACNGT	2 cut(s)	826, 1060
TaiI	ACGT	2 cut(s)	787, 1087
TaqI	TCGA	1 cut(s)	650
TasI	AATT	7 cut(s)	297, 513, 520, 663, 696, 1021, 1033
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	4 cut(s)	119, 132, 150, 776
TfiI	GAWTC	4 cut(s)	325, 496, 692, 862
Tru1I	TTAA	1 cut(s)	1147
Tru9I	TTAA	1 cut(s)	1147
TscAI	CASTG	5 cut(s)	531, 688, 795, 831, 1104
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	359, 525, 726, 983
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	5 cut(s)	531, 688, 795, 831, 1104
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	520, 1021
XbaI	TCTAGA	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	832
XmnI	GAANNNNTTC	1 cut(s)	646
XspI	CTAG	3 cut(s)	185, 636, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.