Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009518

Physical Location & Seq

Genomic Coordinates Forward (+)

12295255 .. 12297245

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGATTTAGTGATATTTTCTGCTCTTCTCCGGCATCAACCGCCGTACGACATAGTACACTTCACCACGACGGAAATGTTACCGGAGGTCGCAGATCTTTCCAAAGCCACCTCCGGAGCCAAAACCCTAGTAAGAAGAAGGATAAAACTGTCCCTTGCTTCTCTTCCGAGATGCCTTTAATCCCTATTCCTCGTCACTTGAGCTGTAGAAACTCCTTTGAATCTCCAAGCGGGTTTCGTCCGAAAATCGCTTCGGCTCGCGGTAGCGATGTTCAAATCCGCCGGAAAAGCTCTGCTGACGTAAGTGACTTGAGGAGATCAAGGAGTTCTCTGCTAAGCTCATCGTCCAGGTATCTTTTAAAAGATCATAAGTCTTTGAAAGGTGATGATAAGGACCTCTGGTTATCATCGGATCGTTCTAAAGATTTGATTCTTTACCGTGACCGCAACGTAACTTCTTCAGCCTCATCATCTTCTTCGTCTTCTTCATCATCTTTCTCTTCTTCTGTGACCAATGTTTCATCGCCGGCTCCATCCACTGATGACCAGGTTGTTGTTTTGAGGGTATCAATCCATTGCAAGGGATGTGAAGGAAAGGTTAGAAAGCATATCTCCAAAATGGAAGGGGTGACGTCATACACTATTGATTTAGCGACAAAGAAGGTGACGGTGGTCGGAAAGATAACACCCGTCGGACTAGTAGAAAGCATCTCAAAGGTCAAATTCGCTCAGCTTTGGCCTTCCTCTTCTTCTCCTCCATTTCCTCACATTCCTAATTATTCACTCCTCAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

265

Amino Acids

29.0

Weight (kDa)

10.11

Isoelectric Point (pI)

69.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	187 - 241	2e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28660
fragaria_vesca	FvH4_3g34750 FvH4_3g34750
malus_domestica	MD03G1102100.v1.1 MD11G1115900.v1.1
prunus_persica	Prupe.6G007500_v2.0.a1
pyrus_communis	pycom03g08330 pycom11g09760
rosa_chinensis	RchiOBHm_Chr5g0062481
rosa_laevigata	RLG00000035560 RLG00000035561
rosa_multiflora	Rmu_sc0004988.1_g000020
rosa_roxburghii	Rroxscaffold_1G00018120
rosa_rugosa	Rorug05G0350000 Rorug05G0350100
rosa_samantha	Rh5AG410100 Rh5BG424000 Rh5BG424100 Rh5CG447700 Rh5CG447800 Rh5DG438500
rosa_wichuraiana	Rw5G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	635
AccII	CGCG	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	5 cut(s)	42, 231, 261, 280, 445
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	632
AfaI	GTAC	2 cut(s)	48, 58
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	221, 275, 379
AhlI	ACTAGT	1 cut(s)	697
AjnI	CCWGG	2 cut(s)	347, 546
AluBI	AGCT	4 cut(s)	204, 291, 339, 733
AluI	AGCT	4 cut(s)	204, 291, 339, 733
AlwI	GGATC	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	4 cut(s)	56, 395, 640, 676
AvaII	GGWCC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	474
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	349, 548
BcuI	ACTAGT	1 cut(s)	697
BfaI	CTAG	2 cut(s)	129, 698
BfmI	CTRYAG	1 cut(s)	205
BglII	AGATCT	1 cut(s)	95
BlpI	GCTNAGC	2 cut(s)	335, 729
Bme1390I	CCNGG	2 cut(s)	349, 548
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	119, 531
BmrFI	CCNGG	2 cut(s)	349, 548
BmsI	GCATC	3 cut(s)	44, 162, 717
BoxI	GACNNNNGTC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	474
Bpu1102I	GCTNAGC	2 cut(s)	335, 729
BpuEI	CTTGAG	2 cut(s)	220, 331
BsaHI	GRCGYC	1 cut(s)	632
BsaWI	WCCGGW	2 cut(s)	83, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	574
BseAI	TCCGGA	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	349, 548
BseGI	GGATG	2 cut(s)	533, 590
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	743
BseRI	GAGGAG	3 cut(s)	328, 744, 776
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	739
BsiSI	CCGG	5 cut(s)	32, 84, 115, 283, 527
BsiWI	CGTACG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	739
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	95, 317, 364, 412
Bsp1720I	GCTNAGC	2 cut(s)	335, 729
BspACI	CCGC	5 cut(s)	42, 231, 261, 280, 445
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	1 cut(s)	742
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	119, 531
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	526
BssMI	GATC	4 cut(s)	95, 317, 364, 412
BssNI	GRCGYC	1 cut(s)	632
Bst2UI	CCWGG	2 cut(s)	349, 548
Bst4CI	ACNGT	3 cut(s)	151, 440, 670
Bst6I	CTCTTC	4 cut(s)	31, 169, 505, 751
BstACI	GRCGYC	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	259, 528
BstDEI	CTNAG	2 cut(s)	335, 729
BstF5I	GGATG	2 cut(s)	533, 590
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	4 cut(s)	98, 320, 367, 415
BstMBI	GATC	4 cut(s)	95, 317, 364, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 288
BstNI	CCWGG	2 cut(s)	349, 548
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	347, 546
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	739
BtgZI	GCGATG	2 cut(s)	282, 507
BtsCI	GGATG	2 cut(s)	533, 590
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	259, 528
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	394
CsiI	ACCWGGT	1 cut(s)	546
Csp6I	GTAC	2 cut(s)	47, 57
CviQI	GTAC	2 cut(s)	47, 57
DdeI	CTNAG	2 cut(s)	335, 729
DpnI	GATC	4 cut(s)	97, 319, 366, 414
DpnII	GATC	4 cut(s)	95, 317, 364, 412
DraI	TTTAAA	1 cut(s)	360
Eam1104I	CTCTTC	4 cut(s)	31, 169, 505, 751
EarI	CTCTTC	4 cut(s)	31, 169, 505, 751
EciI	GGCGGA	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	347, 546
FaiI	YATR	4 cut(s)	54, 369, 609, 637
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	1 cut(s)	224
FokI	GGATG	2 cut(s)	520, 597
FspBI	CTAG	2 cut(s)	129, 698
HaeIII	GGCC	1 cut(s)	739
HapII	CCGG	5 cut(s)	32, 84, 115, 283, 527
Hin1I	GRCGYC	1 cut(s)	632
HinfI	GANTC	2 cut(s)	221, 430
HpaII	CCGG	5 cut(s)	32, 84, 115, 283, 527
HphI	GGTGA	4 cut(s)	56, 395, 640, 676
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	5 cut(s)	169, 243, 412, 677, 695
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	2 cut(s)	74, 695
HpyAV	CCTTC	5 cut(s)	133, 584, 617, 655, 750
HpyCH4III	ACNGT	3 cut(s)	151, 440, 670
HpyCH4IV	ACGT	3 cut(s)	300, 450, 632
HpyCH4V	TGCA	1 cut(s)	579
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 288
HpyF3I	CTNAG	2 cut(s)	335, 729
HpySE526I	ACGT	3 cut(s)	300, 450, 632
Hsp92I	GRCGYC	1 cut(s)	632
Kpn2I	TCCGGA	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	526
KroNI	GCCGGC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	95, 317, 364, 412
LguI	GCTCTTC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	117, 535
LweI	GCATC	3 cut(s)	44, 162, 717
MabI	ACCWGGT	1 cut(s)	546
MaeI	CTAG	2 cut(s)	129, 698
MaeII	ACGT	3 cut(s)	300, 450, 632
MaeIII	GTNAC	8 cut(s)	79, 194, 305, 440, 451, 508, 628, 664
MalI	GATC	4 cut(s)	97, 319, 366, 414
MboI	GATC	4 cut(s)	95, 317, 364, 412
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	2 cut(s)	722, 775
MmeI	TCCRAC	2 cut(s)	655, 673
MroI	TCCGGA	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	526
MseI	TTAA	3 cut(s)	179, 359, 796
MspI	CCGG	5 cut(s)	32, 84, 115, 283, 527
MspR9I	CCNGG	2 cut(s)	349, 548
MvaI	CCWGG	2 cut(s)	349, 548
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	41, 288
NaeI	GCCGGC	1 cut(s)	528
NdeII	GATC	4 cut(s)	95, 317, 364, 412
NgoMIV	GCCGGC	1 cut(s)	526
NlaIV	GGNNCC	2 cut(s)	119, 531
NmuCI	GTSAC	6 cut(s)	194, 305, 440, 508, 628, 664
PciSI	GCTCTTC	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	221, 430
Pfl23II	CGTACG	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	394
PshAI	GACNNNNGTC	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	347, 546
PspGI	CCWGG	2 cut(s)	347, 546
PspLI	CGTACG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	119, 531
PspPI	GGNCC	1 cut(s)	394
PspPPI	RGGWCCY	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	2 cut(s)	48, 58
RsaNI	GTAC	2 cut(s)	47, 57
SapI	GCTCTTC	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	179, 359, 796
Sau3AI	GATC	4 cut(s)	95, 317, 364, 412
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	349, 548
SexAI	ACCWGGT	1 cut(s)	546
SfaNI	GCATC	3 cut(s)	44, 162, 717
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	199, 310
SmoI	CTYRAG	2 cut(s)	199, 310
SpeI	ACTAGT	1 cut(s)	697
Sse9I	AATT	2 cut(s)	722, 775
SsiI	CCGC	5 cut(s)	42, 231, 261, 280, 445
SspMI	CTAG	2 cut(s)	129, 698
StyD4I	CCNGG	2 cut(s)	347, 546
TaaI	ACNGT	3 cut(s)	151, 440, 670
TaiI	ACGT	3 cut(s)	303, 453, 635
TasI	AATT	2 cut(s)	722, 775
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	221, 430
Tru1I	TTAA	3 cut(s)	179, 359, 796
Tru9I	TTAA	3 cut(s)	179, 359, 796
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	6 cut(s)	194, 305, 440, 508, 628, 664
Tsp45I	GTSAC	6 cut(s)	194, 305, 440, 508, 628, 664
TspDTI	ATGAA	2 cut(s)	477, 510
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	722
XspI	CTAG	2 cut(s)	129, 698
ZraI	GACGTC	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.