Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009518

Physical Location & Seq

Genomic Coordinates Forward (+)

68588023 .. 68588823

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGATAATCTTCTTTGTTCATTTCCTGCTTCCACAGCCATTATGGATCAAAGGTCCATTGTCCGCCGAGGCCATAGACTACTCATTGAAGATACTGACACCATTAATCCCCCTCCTCATTGTATTCTTGATAAAGATGGTCGAGGAAAAAAACAACCCCTTTGTCACATCCCTTGTTCCTCTGATCAGTTACCAATTCACCTTAAATCATTTTATGAGAAATGCAGAAGGAGTTTTTCTAAGCAAAGTAGCAGTAGTGATCACCATCAGCTAAGTAGGAAAAGCAGCGCTGACATACATGAGCTAAGAAAGAGTACTTCATCTCGCTATCTCTTAAGGGAAGACTCATCATTCCCCTTCATCGACAGGATATCTGAAGAGGCTGATCTTCATTTTCAGGATGTTGCCTCGATTCCAGCAGCTGAACCTACGCCTAGACGCCCGATGATCTCTGATATAGGGCGTTGTAATTCCCCTACTACTTTAAGGTATAAATCCACTCGATCTCATCATCAGGTTGTAGTCTTGAGAATGTCACTGCATTGCAAGGGCTGTGAACGAAAACTGAGGAAACACCTCTGTAAAATGGAAGGCAAGTGCTGTTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

204

Amino Acids

23.35

Weight (kDa)

9.26

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28660
fragaria_vesca	FvH4_3g34750 FvH4_3g34750
malus_domestica	MD03G1102100.v1.1 MD11G1115900.v1.1
prunus_persica	Prupe.6G007500_v2.0.a1
pyrus_communis	pycom03g08330 pycom11g09760
rosa_chinensis	RchiOBHm_Chr5g0062481
rosa_laevigata	RLG00000035560 RLG00000035561
rosa_multiflora	Rmu_sc0004988.1_g000020
rosa_roxburghii	Rroxscaffold_1G00018120
rosa_rugosa	Rorug05G0350000 Rorug05G0350100
rosa_samantha	Rh5AG410100 Rh5BG424000 Rh5BG424100 Rh5CG447700 Rh5CG447800 Rh5DG438500
rosa_wichuraiana	Rw5G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	1 cut(s)	316
AfeI	AGCGCT	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	3 cut(s)	271, 304, 422
AluI	AGCT	3 cut(s)	271, 304, 422
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	422
Aor51HI	AGCGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	285, 419
AseI	ATTAAT	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	191, 254
AvaII	GGWCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	297, 431
BccI	CCATC	2 cut(s)	131, 273
BclI	TGATCA	2 cut(s)	184, 259
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	286, 420
BlsI	GCNGC	2 cut(s)	287, 421
BmcAI	AGTACT	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	541
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	168, 406
BseJI	GATNNNNATC	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	297, 431
BshFI	GGCC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	72
Bsp143I	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	558
BspPI	GGATC	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
BssNI	GRCGYC	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	439
BstAFI	CTTAAG	1 cut(s)	334
BstDEI	CTNAG	4 cut(s)	240, 272, 305, 566
BstF5I	GGATG	2 cut(s)	168, 406
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	6 cut(s)	49, 187, 262, 388, 450, 506
BstMBI	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	297, 431
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	168, 406
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	54
CseI	GACGC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	7 cut(s)	38, 72, 271, 304, 383, 422, 552
CviKI_1	RGCY	7 cut(s)	38, 72, 271, 304, 383, 422, 552
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	4 cut(s)	240, 272, 305, 566
DpnI	GATC	6 cut(s)	48, 186, 261, 387, 449, 505
DpnII	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	54
Eco47III	AGCGCT	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	372
FaeI	CATG	1 cut(s)	302
FaiI	YATR	7 cut(s)	44, 75, 216, 296, 300, 458, 492
FatI	CATG	1 cut(s)	298
FbaI	TGATCA	2 cut(s)	184, 259
Fnu4HI	GCNGC	2 cut(s)	286, 420
FokI	GGATG	2 cut(s)	155, 413
Fsp4HI	GCNGC	2 cut(s)	286, 420
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	2 cut(s)	286, 420
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	72
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	2 cut(s)	344, 412
HphI	GGTGA	2 cut(s)	191, 254
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	3 cut(s)	184, 376, 454
Hpy188III	TCNNGA	3 cut(s)	128, 398, 526
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	3 cut(s)	222, 367, 584
HpyCH4V	TGCA	3 cut(s)	225, 541, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	240, 272, 305, 566
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	2 cut(s)	184, 259
Kzo9I	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
LpnPI	CCDG	5 cut(s)	39, 352, 383, 429, 500
Lsp1109I	GCAGC	2 cut(s)	297, 431
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	164, 189, 534
MalI	GATC	6 cut(s)	48, 186, 261, 387, 449, 505
MboI	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
MboII	GAAGA	4 cut(s)	101, 353, 380, 389
MluCI	AATT	2 cut(s)	195, 469
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	62, 123, 126, 137, 190, 373, 418, 561, 587
MseI	TTAA	4 cut(s)	105, 204, 335, 485
MspA1I	CMGCKG	1 cut(s)	422
MspCI	CTTAAG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
NlaIII	CATG	1 cut(s)	302
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	164, 534
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	287, 421
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	105, 204, 335, 485
SatI	GCNGC	2 cut(s)	286, 420
Sau3AI	GATC	6 cut(s)	46, 184, 259, 385, 447, 503
Sau96I	GGNCC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	1 cut(s)	338
SetI	ASST	9 cut(s)	56, 204, 273, 306, 424, 430, 491, 519, 579
SinI	GGWCC	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	334, 526
SmoI	CTYRAG	2 cut(s)	334, 526
Sse9I	AATT	2 cut(s)	195, 469
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	435
TaqI	TCGA	4 cut(s)	142, 363, 410, 502
TasI	AATT	2 cut(s)	195, 469
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	4 cut(s)	105, 204, 335, 485
Tru9I	TTAA	4 cut(s)	105, 204, 335, 485
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	164, 534
TseI	GCWGC	2 cut(s)	285, 419
Tsp45I	GTSAC	2 cut(s)	164, 534
TspDTI	ATGAA	4 cut(s)	9, 309, 349, 380
TspRI	CASTG	1 cut(s)	543
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.