Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009518

Physical Location & Seq

Genomic Coordinates Forward (+)

70076445 .. 70079149

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG438500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAAGGAATGGATCGTTTCTTTTGTGCATCTTCTGCTTCCACAGCCATCATGGATCAAAGAGCCATAGTCCGCCGAGCCCACAGAGTCCCCATTAACGACCATGTTTATGTTCATGATCGAAGAAAAAACCAACCCCATCTTCCTATGATCCCTTGTTCATTTGATCAGTTACCAATTGATCCGAAACCACTGTACGAAAGATGCAGAAGGAGTTTTTCTTCTGCGCAGTGTAGCGATAGAGATCAGCTACGTCGGAAAAGCTCTGCTGACATCCATGAGCAAAGAAGAAAGAGCACTTCCTCCACCTCTCGGTATCGGATTAGTGACGGTTCCACAGTACCCTTCATCGACTGGTTATCGGAAACTGACGCAACGTTGGTTCCTTCTGATCATCATAAAGAAGCAGCATCTAACCCTAGACTGCGCCTGATCATGAGATCGAATGATGAATATCGTCGTCCATCCCCAGCTCCATTAAGGTCGTCTTCCACACGCTCTCGTAACCAGGTTGTGGTTCTGAGGGTGTCAGTGAATTGCAAGGGATGTGAAGAAAAACTGAGAAAGCATCTCTCTAAAATGGAAGGTATAGTGGTGTGTGTTATGAGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

204

Amino Acids

23.44

Weight (kDa)

10.04

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28660
fragaria_vesca	FvH4_3g34750 FvH4_3g34750
malus_domestica	MD03G1102100.v1.1 MD11G1115900.v1.1
prunus_persica	Prupe.6G007500_v2.0.a1
pyrus_communis	pycom03g08330 pycom11g09760
rosa_chinensis	RchiOBHm_Chr5g0062481
rosa_laevigata	RLG00000035560 RLG00000035561
rosa_multiflora	Rmu_sc0004988.1_g000020
rosa_roxburghii	Rroxscaffold_1G00018120
rosa_rugosa	Rorug05G0350000 Rorug05G0350100
rosa_samantha	Rh5AG410100 Rh5BG424000 Rh5BG424100 Rh5CG447700 Rh5CG447800 Rh5DG438500
rosa_wichuraiana	Rw5G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	514
AciI	CCGC	1 cut(s)	73
AclI	AACGTT	1 cut(s)	377
AclWI	GGATC	4 cut(s)	21, 63, 145, 176
AfaI	GTAC	2 cut(s)	197, 342
AfiI	CCNNNNNNNGG	2 cut(s)	312, 514
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	250, 264, 473, 612
AluI	AGCT	4 cut(s)	250, 264, 473, 612
Alw21I	GWGCWC	1 cut(s)	299
AlwI	GGATC	4 cut(s)	21, 63, 145, 176
ApeKI	GCWGC	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	229, 429
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	56, 147, 472
BciT130I	CCWGG	1 cut(s)	509
BclI	TGATCA	3 cut(s)	166, 391, 432
BfaI	CTAG	2 cut(s)	420, 613
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	334, 384
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	4 cut(s)	38, 194, 419, 577
BpiI	GAAGAC	1 cut(s)	480
BsaBI	GATNNNNATC	2 cut(s)	243, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 514
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	243, 453
BseBI	CCWGG	1 cut(s)	509
BseGI	GGATG	3 cut(s)	273, 464, 551
BseJI	GATNNNNATC	2 cut(s)	243, 453
BseLI	CCNNNNNNNGG	2 cut(s)	312, 514
BseMII	CTCAG	2 cut(s)	512, 551
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	312, 514
BsmFI	GGGAC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	82, 299
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	513, 552
BspHI	TCATGA	2 cut(s)	115, 435
BspLI	GGNNCC	2 cut(s)	334, 384
BspPI	GGATC	4 cut(s)	21, 63, 145, 176
BsrI	ACTGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	195, 332, 340
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	521, 560
BstF5I	GGATG	3 cut(s)	273, 464, 551
BstHHI	GCGC	2 cut(s)	229, 429
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 44
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	273, 464, 551
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	191, 236, 537
CciI	TCATGA	2 cut(s)	115, 435
CfoI	GCGC	2 cut(s)	229, 429
CseI	GACGC	1 cut(s)	380
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	196, 341
CviAII	CATG	5 cut(s)	52, 104, 116, 278, 436
CviJI	RGCY	7 cut(s)	47, 65, 80, 250, 264, 473, 612
CviKI_1	RGCY	7 cut(s)	47, 65, 80, 250, 264, 473, 612
CviQI	GTAC	2 cut(s)	196, 341
DdeI	CTNAG	2 cut(s)	521, 560
EciI	GGCGGA	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	5 cut(s)	55, 107, 119, 281, 439
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	5 cut(s)	51, 103, 115, 277, 435
FbaI	TGATCA	3 cut(s)	166, 391, 432
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	3 cut(s)	260, 451, 558
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	420, 613
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 428
GluI	GCNGC	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	473
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	229, 429
Hin1II	CATG	5 cut(s)	55, 107, 119, 281, 439
Hin6I	GCGC	2 cut(s)	227, 427
HinP1I	GCGC	2 cut(s)	227, 427
HinfI	GANTC	1 cut(s)	87
Hpy188I	TCNGA	6 cut(s)	186, 258, 321, 364, 391, 522
Hpy188III	TCNNGA	2 cut(s)	116, 436
Hpy99I	CGWCG	2 cut(s)	258, 462
HpyAV	CCTTC	4 cut(s)	204, 355, 396, 578
HpyCH4III	ACNGT	3 cut(s)	195, 332, 340
HpyCH4IV	ACGT	2 cut(s)	253, 377
HpyCH4V	TGCA	3 cut(s)	29, 207, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 44
HpyF3I	CTNAG	2 cut(s)	521, 560
HpySE526I	ACGT	2 cut(s)	253, 377
Hsp92II	CATG	5 cut(s)	55, 107, 119, 281, 439
HspAI	GCGC	2 cut(s)	227, 427
Ksp22I	TGATCA	3 cut(s)	166, 391, 432
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	5 cut(s)	340, 443, 483, 494, 521
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	4 cut(s)	38, 194, 419, 577
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	2 cut(s)	420, 613
MaeII	ACGT	2 cut(s)	253, 377
MaeIII	GTNAC	3 cut(s)	171, 326, 503
MboII	GAAGA	7 cut(s)	24, 134, 135, 213, 300, 480, 563
MfeI	CAATTG	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	82, 299
MluCI	AATT	2 cut(s)	177, 535
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	3 cut(s)	313, 319, 516
MseI	TTAA	2 cut(s)	96, 479
MslI	CAYNNNNRTG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	509
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	35, 44
NlaIII	CATG	5 cut(s)	55, 107, 119, 281, 439
NlaIV	GGNNCC	2 cut(s)	334, 384
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	326
NsbI	TGCGCA	1 cut(s)	228
PagI	TCATGA	2 cut(s)	115, 435
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp1406I	AACGTT	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	334, 384
RsaI	GTAC	2 cut(s)	197, 342
RsaNI	GTAC	2 cut(s)	196, 341
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	96, 479
SatI	GCNGC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	82, 299
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	4 cut(s)	38, 194, 419, 577
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	177, 535
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	2 cut(s)	420, 613
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	195, 332, 340
TaiI	ACGT	2 cut(s)	256, 380
TaqI	TCGA	3 cut(s)	121, 351, 443
TasI	AATT	2 cut(s)	177, 535
Tru1I	TTAA	2 cut(s)	96, 479
Tru9I	TTAA	2 cut(s)	96, 479
TscAI	CASTG	3 cut(s)	198, 236, 537
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	17, 104, 150, 337, 465
TspRI	CASTG	3 cut(s)	198, 236, 537
Van91I	CCANNNNNTGG	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	420, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.