Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009518

Physical Location & Seq

Genomic Coordinates Reverse (-)

6719679 .. 6720887

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAAGGAATGGATATTTTCTGTGCATCTGCAGCTTCTACAGCCATTTGCTCTAGCCTGGACCAACGTGCTATGGTCCGCCAAGGCCTCGGGCCCCTTGACCATCGTCATCACTATCATCTTCGTGATCGCGATCAACTGAAAAACCAACCTCATCATCAAACTCACCATGCCCCTTGCTCATCTCAGTTACCTATCGATCCCAAACCGTTTTACGAGAAATGTAGAAAGAGTTTTTCTAGTGCACAAAGTCAGCCACGCAGAAAAAGCTCTGCTGACATACGTGACTCAACAAGGACTTACAGTACCAACGGCTCTTCTTCTTCTCGGTTTCTCTTAAGTGACTCGCCCTTCATCGACTGGATACCGAAGCCCGATCATAAGAATCTCTCGGCTGCGTTTGTTCCTCCTCAAGTACCCTCTAAGCCTGGAGGTTTGATGAGCTCAAATGGTCATTCTAATACTGATTTGAAGTCTTCCTCTACTCGTTTTCGTCACCAGGTTGTTGCTTTGAGGGTCTCAATGCACTGCAAGGGTTGTGAAGGACAAGTGAGAAAGCACCTCTCTAAAATGGAAGGAGTGACTTCATTTAGCATAGATTTCCCGACAAAGAAAGTCACGGTGATGGGGGACGTGACCCCATCGGCTGTGCTCTCAAGCGTATCCAAGGTGAAGAAAGCCCAGCTCTGGCCTTCTCCAACATCATCATCACCCTCATCACCGTCGGTGGTCAGCATGAACCACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

250

Amino Acids

27.36

Weight (kDa)

9.92

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28660
fragaria_vesca	FvH4_3g34750 FvH4_3g34750
malus_domestica	MD03G1102100.v1.1 MD11G1115900.v1.1
prunus_persica	Prupe.6G007500_v2.0.a1
pyrus_communis	pycom03g08330 pycom11g09760
rosa_chinensis	RchiOBHm_Chr5g0062481
rosa_laevigata	RLG00000035560 RLG00000035561
rosa_multiflora	Rmu_sc0004988.1_g000020
rosa_roxburghii	Rroxscaffold_1G00018120
rosa_rugosa	Rorug05G0350000 Rorug05G0350100
rosa_samantha	Rh5AG410100 Rh5BG424000 Rh5BG424100 Rh5CG447700 Rh5CG447800 Rh5DG438500
rosa_wichuraiana	Rw5G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	307, 417
AfiI	CCNNNNNNNGG	1 cut(s)	687
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	472
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	3 cut(s)	57, 427, 498
AluBI	AGCT	4 cut(s)	35, 270, 444, 685
AluI	AGCT	4 cut(s)	35, 270, 444, 685
Alw21I	GWGCWC	3 cut(s)	247, 446, 654
Alw26I	GTCTC	1 cut(s)	523
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	3 cut(s)	85, 92, 689
ApaI	GGGCCC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	32, 395
AspS9I	GGNCC	4 cut(s)	61, 76, 92, 93
AsuHPI	GGTGA	6 cut(s)	158, 488, 634, 682, 702, 711
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	61, 76
BaeGI	GKGCMC	2 cut(s)	96, 247
BanII	GRGCYC	2 cut(s)	96, 446
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	3 cut(s)	247, 446, 654
BbvI	GCAGC	2 cut(s)	44, 382
BccI	CCATC	3 cut(s)	111, 619, 649
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	3 cut(s)	59, 429, 500
BciVI	GTATCC	2 cut(s)	357, 673
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	54, 240
BfmI	CTRYAG	2 cut(s)	30, 39
BfrI	CTTAAG	1 cut(s)	337
BfuI	GTATCC	2 cut(s)	357, 673
BisI	GCNGC	2 cut(s)	33, 396
BlsI	GCNGC	2 cut(s)	34, 397
Bme1390I	CCNGG	3 cut(s)	59, 429, 500
Bme18I	GGWCC	2 cut(s)	61, 76
BmeT110I	CYCGRG	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	4 cut(s)	61, 76, 92, 93
BmiI	GGNNCC	2 cut(s)	94, 95
BmrFI	CCNGG	3 cut(s)	59, 429, 500
BmsI	GCATC	1 cut(s)	35
BoxI	GACNNNNGTC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	396, 640
Bsa29I	ATCGAT	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	523
BsaJI	CCNNGG	3 cut(s)	82, 88, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse1I	ACTGG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	3 cut(s)	59, 429, 500
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	3 cut(s)	82, 88, 666
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	2 cut(s)	96, 247
BseXI	GCAGC	2 cut(s)	44, 382
BseYI	CCCAGC	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	87, 94, 691
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	247, 446, 654
BsiHKCI	CYCGRG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	3 cut(s)	87, 94, 691
Bso31I	GGTCTC	1 cut(s)	523
BsoBI	CYCGRG	1 cut(s)	89
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	4 cut(s)	96, 247, 446, 654
Bsp143I	GATC	4 cut(s)	127, 133, 199, 376
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	3 cut(s)	87, 94, 691
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	746
BspLI	GGNNCC	2 cut(s)	94, 95
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	82, 88, 666
BssMI	GATC	4 cut(s)	127, 133, 199, 376
BssT1I	CCWWGG	2 cut(s)	82, 666
Bst2UI	CCWGG	3 cut(s)	59, 429, 500
Bst4CI	ACNGT	4 cut(s)	210, 305, 622, 723
Bst6I	CTCTTC	1 cut(s)	322
BstAFI	CTTAAG	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	186, 423
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	130, 136, 202, 379
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	4 cut(s)	127, 133, 199, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 267
BstNI	CCWGG	3 cut(s)	59, 429, 500
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	57, 427, 498
BstSFI	CTRYAG	2 cut(s)	30, 39
BstSLI	GKGCMC	2 cut(s)	96, 247
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	44, 382
BstV2I	GAAGAC	1 cut(s)	468
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	2 cut(s)	357, 673
BsuRI	GGCC	3 cut(s)	87, 94, 691
BsuTUI	ATCGAT	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	634
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
BtuMI	TCGCGA	1 cut(s)	132
CciI	TCATGA	1 cut(s)	746
Cfr13I	GGNCC	4 cut(s)	61, 76, 92, 93
ClaI	ATCGAT	1 cut(s)	198
CsiI	ACCWGGT	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	306, 416
CviAII	CATG	3 cut(s)	170, 736, 747
CviQI	GTAC	2 cut(s)	306, 416
DdeI	CTNAG	2 cut(s)	186, 423
DpnI	GATC	4 cut(s)	129, 135, 201, 378
DpnII	GATC	4 cut(s)	127, 133, 199, 376
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	444
Eco130I	CCWWGG	2 cut(s)	82, 666
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	2 cut(s)	96, 446
Eco31I	GGTCTC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	61, 76
Eco53kI	GAGCTC	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	3 cut(s)	57, 427, 498
EcoT14I	CCWWGG	2 cut(s)	82, 666
EcoT38I	GRGCYC	2 cut(s)	96, 446
ErhI	CCWWGG	2 cut(s)	82, 666
FaeI	CATG	3 cut(s)	173, 739, 750
FaiI	YATR	7 cut(s)	74, 171, 281, 381, 596, 737, 748
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	3 cut(s)	169, 735, 746
Fnu4HI	GCNGC	2 cut(s)	33, 396
FriOI	GRGCYC	2 cut(s)	96, 446
Fsp4HI	GCNGC	2 cut(s)	33, 396
FspBI	CTAG	2 cut(s)	54, 240
GluI	GCNGC	2 cut(s)	33, 396
GsaI	CCCAGC	1 cut(s)	685
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	87, 94, 691
Hin1II	CATG	3 cut(s)	173, 739, 750
HinfI	GANTC	3 cut(s)	287, 344, 385
HphI	GGTGA	6 cut(s)	158, 488, 634, 682, 702, 711
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188III	TCNNGA	4 cut(s)	125, 131, 604, 747
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	4 cut(s)	361, 536, 569, 702
HpyCH4III	ACNGT	4 cut(s)	210, 305, 622, 723
HpyCH4IV	ACGT	3 cut(s)	67, 283, 633
HpyCH4V	TGCA	5 cut(s)	26, 32, 245, 526, 531
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 267
HpyF3I	CTNAG	2 cut(s)	186, 423
HpySE526I	ACGT	3 cut(s)	67, 283, 633
Hsp92II	CATG	3 cut(s)	173, 739, 750
Kzo9I	GATC	4 cut(s)	127, 133, 199, 376
LguI	GCTCTTC	1 cut(s)	322
LpnPI	CCDG	9 cut(s)	44, 71, 346, 414, 441, 485, 512, 673, 695
Lsp1109I	GCAGC	2 cut(s)	44, 382
LweI	GCATC	1 cut(s)	35
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	2 cut(s)	54, 240
MaeII	ACGT	3 cut(s)	67, 283, 633
MaeIII	GTNAC	7 cut(s)	189, 284, 341, 494, 580, 616, 634
MalI	GATC	4 cut(s)	129, 135, 201, 378
MboI	GATC	4 cut(s)	127, 133, 199, 376
MboII	GAAGA	6 cut(s)	113, 309, 312, 315, 468, 685
MhlI	GDGCHC	4 cut(s)	96, 247, 446, 654
MlyI	GAGTC	2 cut(s)	281, 338
MmeI	TCCRAC	1 cut(s)	722
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	2 cut(s)	123, 623
MspCI	CTTAAG	1 cut(s)	337
MspR9I	CCNGG	3 cut(s)	59, 429, 500
MvaI	CCWGG	3 cut(s)	59, 429, 500
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 267
NdeII	GATC	4 cut(s)	127, 133, 199, 376
NlaIII	CATG	3 cut(s)	173, 739, 750
NlaIV	GGNNCC	2 cut(s)	94, 95
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	6 cut(s)	284, 341, 494, 580, 616, 634
NruI	TCGCGA	1 cut(s)	132
PagI	TCATGA	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	34, 397
PleI	GAGTC	2 cut(s)	281, 338
PpsI	GAGTC	2 cut(s)	281, 338
Ppu21I	YACGTR	1 cut(s)	284
PshAI	GACNNNNGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	446
Psp6I	CCWGG	3 cut(s)	57, 427, 498
PspFI	CCCAGC	1 cut(s)	681
PspGI	CCWGG	3 cut(s)	57, 427, 498
PspN4I	GGNNCC	2 cut(s)	94, 95
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	4 cut(s)	61, 76, 92, 93
PstI	CTGCAG	1 cut(s)	34
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	2 cut(s)	307, 417
RsaNI	GTAC	2 cut(s)	306, 416
RseI	CAYNNNNRTG	2 cut(s)	123, 623
SacI	GAGCTC	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	33, 396
Sau3AI	GATC	4 cut(s)	127, 133, 199, 376
Sau96I	GGNCC	4 cut(s)	61, 76, 92, 93
SchI	GAGTC	2 cut(s)	281, 338
ScrFI	CCNGG	3 cut(s)	59, 429, 500
SduI	GDGCHC	4 cut(s)	96, 247, 446, 654
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	2 cut(s)	30, 39
SinI	GGWCC	2 cut(s)	61, 76
SmiMI	CAYNNNNRTG	2 cut(s)	123, 623
SmlI	CTYRAG	3 cut(s)	337, 411, 655
SmoI	CTYRAG	3 cut(s)	337, 411, 655
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	54, 240
SstI	GAGCTC	1 cut(s)	446
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	57, 427, 498
StyI	CCWWGG	2 cut(s)	82, 666
TaaI	ACNGT	4 cut(s)	210, 305, 622, 723
TaiI	ACGT	3 cut(s)	70, 286, 636
TaqI	TCGA	2 cut(s)	198, 357
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	6 cut(s)	284, 341, 494, 580, 616, 634
TseI	GCWGC	2 cut(s)	32, 395
Tsp45I	GTSAC	6 cut(s)	284, 341, 494, 580, 616, 634
TspDTI	ATGAA	3 cut(s)	17, 343, 576
TspRI	CASTG	1 cut(s)	533
Vha464I	CTTAAG	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	61, 76
XspI	CTAG	2 cut(s)	54, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.