Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007322

Physical Location & Seq

Genomic Coordinates Forward (+)

12749743 .. 12751146

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATCGAAATCAAAGACCCAGAAGCATTTTGGATTCATTAGGTGAAGAACTCATCGCAATCCTCACACCTGTCTCGATTTGTATGTTCACCGTTGTTCTTCTGGTCTGTATCCTAAACTCCGACCCTTCTTCTTCCTCCGCTTCTTTCTCCTCTATAGCCACCGCAGCTTACTCTGAGAGCGATTCAGATTCCTCATGGGACAAATTCGTAGGTGCCCTTTTGAATTCTGTCGTCTTCGTCGCTGCAATCACTGTTGCAACATTTGTTCTCGTCCTTCTCTTTTATCTCCGATGTGTTAAATTCTTGAAATTCTACATGGGTTTCTCAGCTTTTATCGTTTTAGGGAACTTAGGTGGAGAAATCTTAGTTTTATTGATAGATCGATTTAGATTCCCGATTGATTCTATCACGTTTTTGATACTTCTCTTCAATTTCTCCGTCGTTGGTGTTTTCGCTGTGTTCATGTCGAAGTTTTCGATTTTGATCACTCAAGGTTACTTGGTTTGGATTGGTGTTTTAGTTGCTTACTTCTTCACGTTGTTACCTGAATGGACTACTTGGGTTCTTCTCGTAGCTTTGGCACTTTATGACATTGCTGCTGTTCTTTTACCTGTTGGTCCATTACGTCTTCTTGTTGAAATGGCTATATCTAGAGACGAAGACATCCCGGCTTTGGTTTACGAAGCACGGCCTGTGATCCGAAATGATTCCCGTTCGGTTCAGAGAAGAGTTTGGAGAGAACAAAGATCTAGCCAGAACAACGCTAATCGAAATGAAGTAAGGGTGGTTGAATCAGCAGAAGTAGAAGAAGAACATGTTGGTTCAAGTGAAAGAGCAGAGATATCTGTGCCGTTGATTGATAGAAGACCTGAGCAAGCTGAGAATTCAGAGACTTTTCTTGAAGGAATTGGGTTGGGATCATCAGGTGCTATCAAGTTAGGGCTTGGGGATTTCATCTTCTATAGTGTTTTGGTTGGAAGAGCTGCAATGTATGATCTGATGACGGTTTACGCTTGTTACTTGGCGATCATAGCTGGTTTAGGGATCACATTGATGCTATTGTCTGTGTATCAGAAGGCTTTACCAGCTCTTCCTGTATCGATCATGTTAGGTGTTGTGTTTTACTTTTTGGCGCGGTTGTTGCTTGAAGTTTTCGTTGTGCAATGTTCTTCTAACCTTGTGATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

397

Amino Acids

44.01

Weight (kDa)

4.87

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Presenilin	PF01080	14 - 278	5.7e-82	Presenilin
Presenilin	PF01080	293 - 387	1e-40	Presenilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29900
fragaria_vesca	FvH4_5g13800 FvH4_5g13800
malus_domestica	MD06G1225300.v1.1 MD14G1212200.v1.1
prunus_persica	Prupe.5G205400_v2.0.a1
pyrus_communis	pycom06g17980 pycom14g17580 pycom15g04200
rosa_chinensis	RchiOBHm_Chr7g0183141
rosa_laevigata	RLG00000005075 RLG00000009030
rosa_multiflora	Rmu_sc0001023.1_g000022 Rmu_ssc0000111.1_g000011
rosa_roxburghii	Rroxscaffold_3G00270720 Rroxscaffold_6G00424050
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh3DG071900 Rh4BG110000 Rh4CG124300 Rh7AG056500 Rh7BG055800 Rh7CG057200 Rh7DG056100
rosa_wichuraiana	Rw7G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	1 cut(s)	1138
AciI	CCGC	3 cut(s)	141, 165, 1138
AclWI	GGATC	4 cut(s)	12, 694, 928, 1055
AcsI	RAATTY	5 cut(s)	206, 226, 302, 311, 886
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	8 cut(s)	226, 310, 433, 641, 794, 828, 905, 1151
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	7 cut(s)	170, 332, 578, 881, 986, 1037, 1091
AluI	AGCT	7 cut(s)	170, 332, 578, 881, 986, 1037, 1091
Alw26I	GTCTC	3 cut(s)	79, 651, 887
AlwI	GGATC	4 cut(s)	12, 694, 928, 1055
AoxI	GGCC	1 cut(s)	692
ApeKI	GCWGC	4 cut(s)	167, 245, 599, 986
ApoI	RAATTY	5 cut(s)	206, 226, 302, 311, 886
Asp700I	GAANNNNTTC	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	1138
AspS9I	GGNCC	1 cut(s)	620
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	56, 82
AvaII	GGWCC	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	4 cut(s)	229, 623, 669, 874
BbvI	GCAGC	4 cut(s)	179, 232, 586, 973
BceAI	ACGGC	2 cut(s)	707, 838
BciVI	GTATCC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	3 cut(s)	79, 651, 887
BfaI	CTAG	2 cut(s)	654, 753
BfmI	CTRYAG	2 cut(s)	156, 964
BfuI	GTATCC	1 cut(s)	122
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	4 cut(s)	168, 246, 600, 987
BlsI	GCNGC	4 cut(s)	169, 247, 601, 988
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	1 cut(s)	1047
BpiI	GAAGAC	4 cut(s)	229, 623, 669, 874
Bpu10I	CCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	671
Bsa29I	ATCGAT	2 cut(s)	385, 1103
BsaBI	GATNNNNATC	2 cut(s)	9, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse3DI	GCAATG	3 cut(s)	594, 996, 1172
Bse8I	GATNNNNATC	2 cut(s)	9, 485
BseCI	ATCGAT	2 cut(s)	385, 1103
BseGI	GGATG	1 cut(s)	666
BseJI	GATNNNNATC	2 cut(s)	9, 485
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	3 cut(s)	594, 996, 1172
BseMII	CTCAG	4 cut(s)	168, 342, 864, 873
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	179, 232, 586, 973
Bsh1236I	CGCG	1 cut(s)	1138
BshFI	GGCC	1 cut(s)	694
BshNI	GGYRCC	1 cut(s)	215
BshVI	ATCGAT	2 cut(s)	385, 1103
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	3 cut(s)	79, 651, 887
BsmBI	CGTCTC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	220
BspACI	CCGC	3 cut(s)	141, 165, 1138
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	4 cut(s)	169, 341, 865, 874
BspDI	ATCGAT	2 cut(s)	385, 1103
BspFNI	CGCG	1 cut(s)	1138
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	4 cut(s)	12, 694, 928, 1055
BspQI	GCTCTTC	2 cut(s)	976, 1098
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	3 cut(s)	594, 996, 1172
Bst4CI	ACNGT	3 cut(s)	94, 256, 1009
Bst6I	CTCTTC	4 cut(s)	434, 724, 976, 1098
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	6 cut(s)	177, 328, 352, 367, 873, 882
BstF5I	GGATG	1 cut(s)	666
BstFNI	CGCG	1 cut(s)	1138
BstHHI	GCGC	1 cut(s)	1138
BstMAI	GTCTC	3 cut(s)	79, 651, 887
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 1034, 1088, 1144
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	2 cut(s)	156, 964
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	1138
BstV1I	GCAGC	4 cut(s)	179, 232, 586, 973
BstV2I	GAAGAC	4 cut(s)	229, 623, 669, 874
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
Bsu15I	ATCGAT	2 cut(s)	385, 1103
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	694
BsuTUI	ATCGAT	2 cut(s)	385, 1103
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	879
CfoI	GCGC	1 cut(s)	1138
Cfr13I	GGNCC	1 cut(s)	620
ClaI	ATCGAT	2 cut(s)	385, 1103
CviAII	CATG	5 cut(s)	198, 319, 466, 818, 1108
DdeI	CTNAG	6 cut(s)	177, 328, 352, 367, 873, 882
Eam1104I	CTCTTC	4 cut(s)	434, 724, 976, 1098
EarI	CTCTTC	4 cut(s)	434, 724, 976, 1098
Eco32I	GATATC	1 cut(s)	846
Eco47I	GGWCC	1 cut(s)	620
EcoRI	GAATTC	2 cut(s)	226, 886
EcoRV	GATATC	1 cut(s)	846
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	5 cut(s)	201, 322, 469, 821, 1111
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	5 cut(s)	197, 318, 465, 817, 1107
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	168, 246, 600, 987
FokI	GGATG	1 cut(s)	653
Fsp4HI	GCNGC	4 cut(s)	168, 246, 600, 987
FspBI	CTAG	2 cut(s)	654, 753
GlaI	GCGC	1 cut(s)	1137
GluI	GCNGC	4 cut(s)	168, 246, 600, 987
HaeIII	GGCC	1 cut(s)	694
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	1138
Hin1II	CATG	5 cut(s)	201, 322, 469, 821, 1111
Hin6I	GCGC	1 cut(s)	1136
HinP1I	GCGC	1 cut(s)	1136
HinfI	GANTC	7 cut(s)	35, 185, 191, 393, 404, 710, 794
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	2 cut(s)	56, 82
Hpy166II	GTNNAC	3 cut(s)	90, 682, 1012
Hpy188I	TCNGA	9 cut(s)	124, 178, 190, 293, 704, 726, 892, 1002, 1077
Hpy188III	TCNNGA	5 cut(s)	76, 307, 397, 654, 902
Hpy8I	GTNNAC	3 cut(s)	90, 682, 1012
Hpy99I	CGWCG	2 cut(s)	245, 446
HpyAV	CCTTC	4 cut(s)	138, 287, 899, 1072
HpyCH4III	ACNGT	3 cut(s)	94, 256, 1009
HpyCH4IV	ACGT	3 cut(s)	413, 539, 628
HpyCH4V	TGCA	4 cut(s)	248, 260, 989, 1165
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 1034, 1088, 1144
HpyF3I	CTNAG	6 cut(s)	177, 328, 352, 367, 873, 882
HpySE526I	ACGT	3 cut(s)	413, 539, 628
Hsp92II	CATG	5 cut(s)	201, 322, 469, 821, 1111
HspAI	GCGC	1 cut(s)	1136
Ksp22I	TGATCA	1 cut(s)	486
LguI	GCTCTTC	2 cut(s)	976, 1098
Lsp1109I	GCAGC	4 cut(s)	179, 232, 586, 973
LweI	GCATC	1 cut(s)	1047
MaeI	CTAG	2 cut(s)	654, 753
MaeII	ACGT	3 cut(s)	413, 539, 628
MaeIII	GTNAC	3 cut(s)	497, 543, 1019
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	7 cut(s)	206, 226, 302, 311, 433, 886, 909
MmeI	TCCRAC	2 cut(s)	147, 958
MnlI	CCTC	4 cut(s)	74, 148, 163, 205
MroXI	GAANNNNTTC	1 cut(s)	709
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	1055
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	1138
MwoI	GCNNNNNNNGC	4 cut(s)	167, 1034, 1088, 1144
NciI	CCSGG	1 cut(s)	671
NlaIII	CATG	5 cut(s)	201, 322, 469, 821, 1111
NlaIV	GGNNCC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	821
PciI	ACATGT	1 cut(s)	817
PciSI	GCTCTTC	2 cut(s)	976, 1098
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	7 cut(s)	35, 185, 191, 393, 404, 710, 794
PkrI	GCNGC	4 cut(s)	169, 247, 601, 988
PscI	ACATGT	1 cut(s)	817
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	749
RseI	CAYNNNNRTG	1 cut(s)	1055
SapI	GCTCTTC	2 cut(s)	976, 1098
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	168, 246, 600, 987
Sau96I	GGNCC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	1047
SfcI	CTRYAG	2 cut(s)	156, 964
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	1055
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	7 cut(s)	206, 226, 302, 311, 433, 886, 909
SsiI	CCGC	3 cut(s)	141, 165, 1138
SspMI	CTAG	2 cut(s)	654, 753
StyD4I	CCNGG	1 cut(s)	669
TaaI	ACNGT	3 cut(s)	94, 256, 1009
TaiI	ACGT	3 cut(s)	416, 542, 631
TaqI	TCGA	7 cut(s)	7, 77, 385, 470, 479, 772, 1103
TasI	AATT	7 cut(s)	206, 226, 302, 311, 433, 886, 909
TfiI	GAWTC	7 cut(s)	35, 185, 191, 393, 404, 710, 794
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	4 cut(s)	167, 245, 599, 986
TspDTI	ATGAA	4 cut(s)	27, 454, 792, 946
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	5 cut(s)	206, 226, 302, 311, 886
XbaI	TCTAGA	1 cut(s)	653
XceI	RCATGY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	2 cut(s)	654, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.