Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001023.1

Orthogroup ID

OG0007322

Physical Location & Seq

Genomic Coordinates Reverse (-)

94421 .. 94918

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001023.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgtgcgagttacagtgggcagtttggatctcaaaatttcggctgttacctcgtcaatcgtgggaatctctctctcctcgtcagaattggagtcggagtgccgcccatttgtgcacgtcacagtgggcaatgggcaatttgaatctcaaaattctggtggcttcgaaaccggcgcgcactgttgtccacctttcgtcttcgccgttgttcaattttgctattgtgggtgtgttggctgtgttcgtgtcgaaaatgtcgatacctgtgactcaaggctatttggtagtgattggaatgctggttgcgtattggtttacgttgctgcctgaatggactacttgggtgctgttggtggccatggcaatgtatgatctcgcggcggttttgctccctgttgagccgccgaggctgttggtggagcttgcgatttccagagacgaagaaattctaactttggtttttatgatgctctgcctgtggtggctgatcccgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

165

Amino Acids

18.82

Weight (kDa)

8.55

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29900
fragaria_vesca	FvH4_5g13800 FvH4_5g13800
malus_domestica	MD06G1225300.v1.1 MD14G1212200.v1.1
prunus_persica	Prupe.5G205400_v2.0.a1
pyrus_communis	pycom06g17980 pycom14g17580 pycom15g04200
rosa_chinensis	RchiOBHm_Chr7g0183141
rosa_laevigata	RLG00000005075 RLG00000009030
rosa_multiflora	Rmu_sc0001023.1_g000022 Rmu_ssc0000111.1_g000011
rosa_roxburghii	Rroxscaffold_3G00270720 Rroxscaffold_6G00424050
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh3DG071900 Rh4BG110000 Rh4CG124300 Rh7AG056500 Rh7BG055800 Rh7CG057200 Rh7DG056100
rosa_wichuraiana	Rw7G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	175, 377
AciI	CCGC	4 cut(s)	102, 377, 380, 401
AclWI	GGATC	2 cut(s)	35, 481
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	3 cut(s)	35, 150, 444
AgsI	TTSAA	2 cut(s)	142, 211
AjiI	CACGTC	1 cut(s)	117
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	429
Alw44I	GTGCAC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	35, 481
AoxI	GGCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	35, 150, 444
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	175, 177
AsuII	TTCGAA	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	406
BisI	GCNGC	4 cut(s)	102, 323, 378, 401
BlsI	GCNGC	4 cut(s)	103, 324, 379, 402
BmgBI	CACGTC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	357, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse118I	RCCGGY	1 cut(s)	169
Bse3DI	GCAATG	2 cut(s)	135, 369
Bse8I	GATNNNNATC	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	357, 404
BseJI	GATNNNNATC	1 cut(s)	491
BseMI	GCAATG	2 cut(s)	135, 369
BsePI	GCGCGC	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	175, 377
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	429
BsmBI	CGTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	27, 370, 486, 492
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	4 cut(s)	102, 377, 380, 401
BspANI	GGCC	1 cut(s)	356
BspFNI	CGCG	2 cut(s)	175, 377
BspPI	GGATC	2 cut(s)	35, 481
BspT104I	TTCGAA	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	135, 369
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	357, 404
BssHII	GCGCGC	1 cut(s)	173
BssMI	GATC	4 cut(s)	27, 370, 486, 492
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	15, 123, 181
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	175, 423
BstDSI	CCRYGG	1 cut(s)	357
BstFNI	CGCG	2 cut(s)	175, 377
BstHHI	GCGC	2 cut(s)	175, 177
BstKTI	GATC	4 cut(s)	30, 373, 489, 495
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	27, 370, 486, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	2 cut(s)	175, 377
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	20, 128, 177
Cac8I	GCNNGC	2 cut(s)	175, 423
CfoI	GCGC	2 cut(s)	175, 177
Cfr10I	RCCGGY	1 cut(s)	169
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	9 cut(s)	43, 161, 236, 276, 356, 400, 409, 421, 484
CviKI_1	RGCY	9 cut(s)	43, 161, 236, 276, 356, 400, 409, 421, 484
DpnI	GATC	4 cut(s)	29, 372, 488, 494
DpnII	GATC	4 cut(s)	27, 370, 486, 492
EaeI	YGGCCR	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	1 cut(s)	361
FaiI	YATR	3 cut(s)	359, 369, 464
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	102, 323, 378, 401
Fsp4HI	GCNGC	4 cut(s)	102, 323, 378, 401
GlaI	GCGC	2 cut(s)	174, 176
GluI	GCNGC	4 cut(s)	102, 323, 378, 401
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	2 cut(s)	175, 177
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	2 cut(s)	173, 175
HinP1I	GCGC	2 cut(s)	173, 175
HinfI	GANTC	4 cut(s)	65, 91, 142, 268
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	114, 187, 315
Hpy188I	TCNGA	3 cut(s)	84, 96, 497
Hpy188III	TCNNGA	2 cut(s)	432, 490
Hpy8I	GTNNAC	3 cut(s)	114, 187, 315
HpyCH4III	ACNGT	3 cut(s)	15, 123, 181
HpyCH4IV	ACGT	2 cut(s)	116, 317
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpySE526I	ACGT	2 cut(s)	116, 317
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	2 cut(s)	173, 175
Kzo9I	GATC	4 cut(s)	27, 370, 486, 492
LmnI	GCTCC	2 cut(s)	393, 418
LpnPI	CCDG	8 cut(s)	140, 183, 276, 284, 339, 405, 445, 488
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	456
MaeII	ACGT	2 cut(s)	116, 317
MaeIII	GTNAC	4 cut(s)	9, 45, 117, 265
MalI	GATC	4 cut(s)	29, 372, 488, 494
MboI	GATC	4 cut(s)	27, 370, 486, 492
MboII	GAAGA	2 cut(s)	189, 452
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	6 cut(s)	35, 85, 136, 150, 211, 444
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	100, 262
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	60, 87, 399
Mox20I	TGGCCA	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	300
MvnI	CGCG	2 cut(s)	175, 377
MwoI	GCNNNNNNNGC	1 cut(s)	406
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	27, 370, 486, 492
NlaIII	CATG	1 cut(s)	361
NmeAIII	GCCGAG	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	117, 265
NspV	TTCGAA	1 cut(s)	164
PauI	GCGCGC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 254
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	65, 142
PkrI	GCNGC	4 cut(s)	103, 324, 379, 402
PleI	GAGTC	2 cut(s)	99, 262
PpsI	GAGTC	2 cut(s)	99, 262
PsuI	RGATCY	1 cut(s)	27
PteI	GCGCGC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	362
SatI	GCNGC	4 cut(s)	102, 323, 378, 401
Sau3AI	GATC	4 cut(s)	27, 370, 486, 492
SchI	GAGTC	2 cut(s)	100, 262
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	52, 119, 192, 265, 320, 423
SfaNI	GCATC	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	6 cut(s)	35, 85, 136, 150, 211, 444
SsiI	CCGC	4 cut(s)	102, 377, 380, 401
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	15, 123, 181
TaiI	ACGT	2 cut(s)	119, 320
TaqI	TCGA	3 cut(s)	164, 248, 257
TasI	AATT	6 cut(s)	35, 85, 136, 150, 211, 444
TauI	GCSGC	3 cut(s)	104, 380, 403
TfiI	GAWTC	2 cut(s)	65, 142
TscAI	CASTG	3 cut(s)	20, 128, 184
TseFI	GTSAC	2 cut(s)	117, 265
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	2 cut(s)	117, 265
TspRI	CASTG	3 cut(s)	20, 128, 184
VneI	GTGCAC	1 cut(s)	112
XapI	RAATTY	3 cut(s)	35, 150, 444
XmnI	GAANNNNTTC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.