MD06G1225300.v1.1

subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
35609410 .. 35610754
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1225300.v1.1.491

Sequence Viewer

Length: 1302 bp
ATGGCCCAAAACCCAAGACCCCCAACAATTCTCAAATCCCTGGGCGAAGAACTGATCAGAATCATCACTCCGGTCTCCGTCTGTATGCTGCTGGTGGTCCTTCTGGTCACAGTCCTAAACGATGACGCTTCATCCTCGTCGGAGACGGTGAACTCAATCGCCACCATTGCCTACGACGAGACCGCTTCGGACTCCTCCTGGGACAAATTCGTGGGTGCCCTCTTAAACGCCCTCGTTTTTGTCGCCGTCGTCACGGTCGTCACGTTCGTTTTGGTGCTCCTTTTTTACCTCCGATGCACCAGGTTCCTCAAAATCTACATGGGTTTTTCGTCTTTTGTTGTTCTGGGATTCATGGGCGGAGAAGTCGCCCTGTTTTTGATTCAGGACTTTAATGTTCCAGTCGATTCGATTACGTTTGTTTTGGTGTTGTTCAATTTTGCTGTTGTTGGGGTTTTGGCGGTGTTCATGTCGAAAATGGCGATTTTCGTGACGCAGGGCTATTTGGTTGTGATTGGAATGCTGGTTGCTTATTGGTTTACGTTGTTGCCCGAGTGGACAACTTGGGTGCTGTTGGTTGCCATGGCATTGTATGATCTTGCCGCGGTTTTGTTGCCCGTCGGGCCGTTGAGGTTGTTGGTGGAGCTCGCAATCTCTAGGGATGAGGAGATTCCGGCTCTGGTTTACGAGGCCAGGCCCGTGACTGCTCATGATTCTCAGGGTAATGTGGGTGAGAGGAGGGTTTGGAGAGATAGGAGAAATGAGAATTCGAGTAATGGGAATGAGAATCCCGGGTCAACTTCTAATGTCAATGTCGATCACGCTTCTGGTTTGAATTCAAGTTCGAATCTTGGTGAGTTTGGCAATGTTAATAATGATTCGAGTTTGGTTAGAGCCGAAGAGGGGCGGATTCCAGATAGGGGTCAAGAGCTATCTGCCCCATTACTTGAGCGTGTAGCAAATGTTCCACCTCGCAGGCAGGAAGATGTTGTGGCGAGTGAAAGCTTGTTGCTTGAGGGCATCGGATTGGGGTCCTCCGGTTCAATCAAGCTGGGATTGGGAGACTTCATCTTCTACAGTGTTTTAGTCGGGAGGGCAGCAATGTATGATTTTATGACCGTGTATGCGTGTTATCTTGCCATCATAGGTGGCCTTGGAGTTACTCTGATACTGTTAGCTTTGTATCAGAAAGCTCTGCCAGCTCTTCCGGTGTCAATAATACTCGGCGTACTGATTTATGTATTGACACGGCTCTTACTCGAAGTTTTCGTTGTACAATGTTCCTTGAACCTCATTATGTTCTAG

Protein Analysis

434

Amino Acids

47.16

Weight (kDa)

4.7

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Presenilin PF01080 13 - 423 2.8e-129 Presenilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 1 cut(s) 602
AciI CCGC 6 cut(s) 183, 357, 458, 600, 602, 904
AcsI RAATTY 3 cut(s) 206, 763, 832
AfaI GTAC 2 cut(s) 1227, 1272
AfiI CCNNNNNNNGG 2 cut(s) 900, 917
AgsI TTSAA 5 cut(s) 433, 832, 837, 1041, 1285
AjnI CCWGG 4 cut(s) 39, 197, 299, 689
AluBI AGCT 7 cut(s) 643, 928, 1002, 1048, 1175, 1190, 1199
AluI AGCT 7 cut(s) 643, 928, 1002, 1048, 1175, 1190, 1199
Alw21I GWGCWC 2 cut(s) 279, 645
Alw26I GTCTC 4 cut(s) 79, 137, 173, 1053
Ama87I CYCGRG 2 cut(s) 548, 788
AoxI GGCC 5 cut(s) 3, 620, 687, 692, 1147
ApeKI GCWGC 2 cut(s) 88, 1094
ApoI RAATTY 3 cut(s) 206, 763, 832
AspS9I GGNCC 5 cut(s) 4, 97, 620, 693, 1029
AsuC2I CCSGG 2 cut(s) 789, 790
AsuHPI GGTGA 3 cut(s) 160, 740, 863
AsuII TTCGAA 1 cut(s) 842
AvaI CYCGRG 2 cut(s) 548, 788
AvaII GGWCC 2 cut(s) 97, 1029
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 279, 645
BbvI GCAGC 2 cut(s) 75, 1106
BccI CCATC 1 cut(s) 1145
BceAI ACGGC 3 cut(s) 230, 607, 1262
BciT130I CCWGG 4 cut(s) 41, 199, 301, 691
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 789, 790
BcoDI GTCTC 4 cut(s) 79, 137, 173, 1053
BfaI CTAG 2 cut(s) 654, 1300
BfmI CTRYAG 1 cut(s) 1072
BglI GCCNNNNNGGC 1 cut(s) 619
BisI GCNGC 3 cut(s) 89, 600, 1095
BlsI GCNGC 3 cut(s) 90, 601, 1096
Bme1390I CCNGG 6 cut(s) 41, 199, 301, 691, 789, 790
Bme18I GGWCC 2 cut(s) 97, 1029
BmeT110I CYCGRG 2 cut(s) 548, 788
BmgT120I GGNCC 5 cut(s) 4, 97, 620, 693, 1029
BmiI GGNNCC 3 cut(s) 217, 305, 1030
BmrFI CCNGG 6 cut(s) 41, 199, 301, 691, 789, 790
BmsI GCATC 2 cut(s) 284, 1026
Bpu14I TTCGAA 1 cut(s) 842
BpuEI CTTGAG 2 cut(s) 965, 1031
BpuMI CCSGG 2 cut(s) 789, 790
BsaBI GATNNNNATC 1 cut(s) 59
BsaI GGTCTC 2 cut(s) 79, 173
BsaJI CCNNGG 7 cut(s) 39, 40, 198, 579, 600, 788, 1150
BsaWI WCCGGW 3 cut(s) 70, 1034, 1204
Bsc4I CCNNNNNNNGG 2 cut(s) 900, 917
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 3 cut(s) 165, 868, 1104
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 4 cut(s) 41, 199, 301, 691
BseDI CCNNGG 7 cut(s) 39, 40, 198, 579, 600, 788, 1150
BseGI GGATG 2 cut(s) 131, 664
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 900, 917
BseMI GCAATG 3 cut(s) 165, 868, 1104
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 3 cut(s) 184, 677, 748
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 2 cut(s) 75, 1106
BseYI CCCAGC 1 cut(s) 1048
Bsh1236I CGCG 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 5, 622, 689, 694, 1149
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 279, 645
BsiHKCI CYCGRG 2 cut(s) 548, 788
BsiSI CCGG 5 cut(s) 71, 671, 789, 1035, 1205
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 900, 917
BsmAI GTCTC 4 cut(s) 79, 137, 173, 1053
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 5 cut(s) 5, 622, 689, 694, 1149
Bso31I GGTCTC 2 cut(s) 79, 173
BsoBI CYCGRG 2 cut(s) 548, 788
Bsp119I TTCGAA 1 cut(s) 842
Bsp1286I GDGCHC 3 cut(s) 220, 279, 645
Bsp1407I TGTACA 1 cut(s) 1270
Bsp143I GATC 3 cut(s) 54, 592, 814
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 6 cut(s) 183, 357, 458, 600, 602, 904
BspANI GGCC 5 cut(s) 5, 622, 689, 694, 1149
BspCNI CTCAG 1 cut(s) 727
BspFNI CGCG 1 cut(s) 602
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 217, 305, 1030
BspQI GCTCTTC 1 cut(s) 1206
BspT104I TTCGAA 1 cut(s) 842
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 2 cut(s) 79, 173
BsrDI GCAATG 3 cut(s) 165, 868, 1104
BsrGI TGTACA 1 cut(s) 1270
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 7 cut(s) 39, 40, 198, 579, 600, 788, 1150
BssMI GATC 3 cut(s) 54, 592, 814
BssT1I CCWWGG 2 cut(s) 579, 1150
Bst2UI CCWGG 4 cut(s) 41, 199, 301, 691
Bst4CI ACNGT 6 cut(s) 112, 148, 256, 1076, 1117, 1170
Bst6I CTCTTC 2 cut(s) 891, 1206
BstAUI TGTACA 1 cut(s) 1270
BstBI TTCGAA 1 cut(s) 842
BstC8I GCNNGC 3 cut(s) 645, 974, 1197
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 2 cut(s) 579, 600
BstF5I GGATG 2 cut(s) 131, 664
BstFNI CGCG 1 cut(s) 602
BstKTI GATC 3 cut(s) 57, 595, 817
BstMAI GTCTC 4 cut(s) 79, 137, 173, 1053
BstMBI GATC 3 cut(s) 54, 592, 814
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 167, 619, 1196
BstNI CCWGG 4 cut(s) 41, 199, 301, 691
BstSCI CCNGG 6 cut(s) 39, 197, 299, 689, 787, 788
BstSFI CTRYAG 1 cut(s) 1072
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 602
BstV1I GCAGC 2 cut(s) 75, 1106
BsuRI GGCC 5 cut(s) 5, 622, 689, 694, 1149
BtgI CCRYGG 2 cut(s) 579, 600
BtsCI GGATG 2 cut(s) 131, 664
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 3 cut(s) 645, 974, 1197
CciI TCATGA 1 cut(s) 706
Cfr13I GGNCC 5 cut(s) 4, 97, 620, 693, 1029
Cfr42I CCGCGG 1 cut(s) 603
Cfr9I CCCGGG 1 cut(s) 788
CseI GACGC 2 cut(s) 134, 499
CsiI ACCWGGT 1 cut(s) 299
Csp6I GTAC 2 cut(s) 1226, 1271
CviAII CATG 5 cut(s) 319, 352, 466, 580, 707
CviQI GTAC 2 cut(s) 1226, 1271
DdeI CTNAG 1 cut(s) 714
DpnI GATC 3 cut(s) 56, 594, 816
DpnII GATC 3 cut(s) 54, 592, 814
Eam1104I CTCTTC 2 cut(s) 891, 1206
EarI CTCTTC 2 cut(s) 891, 1206
EciI GGCGGA 2 cut(s) 372, 919
Ecl136II GAGCTC 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 579, 1150
Eco24I GRGCYC 1 cut(s) 645
Eco31I GGTCTC 2 cut(s) 79, 173
Eco47I GGWCC 2 cut(s) 97, 1029
Eco53kI GAGCTC 1 cut(s) 643
Eco88I CYCGRG 2 cut(s) 548, 788
EcoICRI GAGCTC 1 cut(s) 643
EcoO109I RGGNCCY 1 cut(s) 1029
EcoRI GAATTC 2 cut(s) 763, 832
EcoRII CCWGG 4 cut(s) 39, 197, 299, 689
EcoT14I CCWWGG 2 cut(s) 579, 1150
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 579, 1150
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 5 cut(s) 322, 355, 469, 583, 710
FaqI GGGAC 1 cut(s) 215
FatI CATG 5 cut(s) 318, 351, 465, 579, 706
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 89, 600, 1095
FokI GGATG 2 cut(s) 118, 671
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 3 cut(s) 89, 600, 1095
FspBI CTAG 2 cut(s) 654, 1300
GluI GCNGC 3 cut(s) 89, 600, 1095
GsaI CCCAGC 1 cut(s) 1052
HaeIII GGCC 5 cut(s) 5, 622, 689, 694, 1149
HapII CCGG 5 cut(s) 71, 671, 789, 1035, 1205
HgaI GACGC 2 cut(s) 134, 499
Hin1II CATG 5 cut(s) 322, 355, 469, 583, 710
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 1 cut(s) 1000
HpaII CCGG 5 cut(s) 71, 671, 789, 1035, 1205
HphI GGTGA 3 cut(s) 160, 740, 863
Hpy166II GTNNAC 5 cut(s) 151, 537, 555, 682, 795
Hpy188I TCNGA 7 cut(s) 59, 142, 190, 293, 1022, 1164, 1185
Hpy188III TCNNGA 6 cut(s) 383, 487, 707, 911, 923, 1087
Hpy8I GTNNAC 5 cut(s) 151, 537, 555, 682, 795
Hpy99I CGWCG 4 cut(s) 142, 179, 251, 620
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 6 cut(s) 112, 148, 256, 1076, 1117, 1170
HpyCH4IV ACGT 3 cut(s) 263, 413, 539
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 619, 1196
HpyF3I CTNAG 1 cut(s) 714
HpySE526I ACGT 3 cut(s) 263, 413, 539
Hsp92II CATG 5 cut(s) 322, 355, 469, 583, 710
Ksp22I TGATCA 1 cut(s) 54
KspI CCGCGG 1 cut(s) 603
Kzo9I GATC 3 cut(s) 54, 592, 814
LguI GCTCTTC 1 cut(s) 1206
LmnI GCTCC 2 cut(s) 282, 640
Lsp1109I GCAGC 2 cut(s) 75, 1106
LweI GCATC 2 cut(s) 284, 1026
MabI ACCWGGT 1 cut(s) 299
MaeI CTAG 2 cut(s) 654, 1300
MaeII ACGT 3 cut(s) 263, 413, 539
MaeIII GTNAC 6 cut(s) 106, 250, 259, 487, 697, 1156
MalI GATC 3 cut(s) 56, 594, 816
MboI GATC 3 cut(s) 54, 592, 814
MboII GAAGA 5 cut(s) 59, 908, 992, 1060, 1193
MhlI GDGCHC 3 cut(s) 220, 279, 645
MluCI AATT 5 cut(s) 27, 206, 433, 763, 832
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 120
MseI TTAA 3 cut(s) 224, 390, 867
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 5 cut(s) 71, 671, 789, 1035, 1205
MspR9I CCNGG 6 cut(s) 41, 199, 301, 691, 789, 790
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 4 cut(s) 41, 199, 301, 691
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 3 cut(s) 167, 619, 1196
NciI CCSGG 2 cut(s) 789, 790
NcoI CCATGG 1 cut(s) 579
NdeII GATC 3 cut(s) 54, 592, 814
NlaIII CATG 5 cut(s) 322, 355, 469, 583, 710
NlaIV GGNNCC 3 cut(s) 217, 305, 1030
NmeAIII GCCGAG 1 cut(s) 1200
NmuCI GTSAC 5 cut(s) 106, 250, 259, 487, 697
NspV TTCGAA 1 cut(s) 842
PagI TCATGA 1 cut(s) 706
PasI CCCWGGG 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 1206
PcsI WCGNNNNNNNCGW 5 cut(s) 255, 260, 264, 476, 1263
PctI GAATGC 1 cut(s) 522
PkrI GCNGC 3 cut(s) 90, 601, 1096
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 1029
Psp124BI GAGCTC 1 cut(s) 645
Psp5II RGGWCCY 1 cut(s) 1029
Psp6I CCWGG 4 cut(s) 39, 197, 299, 689
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 4 cut(s) 39, 197, 299, 689
PspN4I GGNNCC 3 cut(s) 217, 305, 1030
PspPI GGNCC 5 cut(s) 4, 97, 620, 693, 1029
PspPPI RGGWCCY 1 cut(s) 1029
PsrI GAACNNNNNNTAC 2 cut(s) 945, 977
RsaI GTAC 2 cut(s) 1227, 1272
RsaNI GTAC 2 cut(s) 1226, 1271
SacI GAGCTC 1 cut(s) 645
SacII CCGCGG 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 1206
SaqAI TTAA 3 cut(s) 224, 390, 867
SatI GCNGC 3 cut(s) 89, 600, 1095
Sau3AI GATC 3 cut(s) 54, 592, 814
Sau96I GGNCC 5 cut(s) 4, 97, 620, 693, 1029
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 6 cut(s) 41, 199, 301, 691, 789, 790
SduI GDGCHC 3 cut(s) 220, 279, 645
SexAI ACCWGGT 1 cut(s) 299
SfaNI GCATC 2 cut(s) 284, 1026
SfcI CTRYAG 1 cut(s) 1072
Sfr303I CCGCGG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 842
SgrBI CCGCGG 1 cut(s) 603
SinI GGWCC 2 cut(s) 97, 1029
SmaI CCCGGG 1 cut(s) 790
SmlI CTYRAG 2 cut(s) 944, 1010
SmoI CTYRAG 2 cut(s) 944, 1010
Sse9I AATT 5 cut(s) 27, 206, 433, 763, 832
SsiI CCGC 6 cut(s) 183, 357, 458, 600, 602, 904
SspMI CTAG 2 cut(s) 654, 1300
SstI GAGCTC 1 cut(s) 645
StyD4I CCNGG 6 cut(s) 39, 197, 299, 689, 787, 788
StyI CCWWGG 2 cut(s) 579, 1150
TaaI ACNGT 6 cut(s) 112, 148, 256, 1076, 1117, 1170
TaiI ACGT 3 cut(s) 266, 416, 542
TaqI TCGA 8 cut(s) 402, 407, 470, 767, 813, 842, 878, 1257
TasI AATT 5 cut(s) 27, 206, 433, 763, 832
TatI WGTACW 1 cut(s) 1270
TauI GCSGC 1 cut(s) 602
Tru1I TTAA 3 cut(s) 224, 390, 867
Tru9I TTAA 3 cut(s) 224, 390, 867
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 5 cut(s) 106, 250, 259, 487, 697
TseI GCWGC 2 cut(s) 88, 1094
Tsp45I GTSAC 5 cut(s) 106, 250, 259, 487, 697
TspDTI ATGAA 4 cut(s) 120, 340, 454, 1054
TspGWI ACGGA 1 cut(s) 67
TspMI CCCGGG 1 cut(s) 788
TspRI CASTG 1 cut(s) 1081
VpaK11BI GGWCC 2 cut(s) 97, 1029
XapI RAATTY 3 cut(s) 206, 763, 832
XmaI CCCGGG 1 cut(s) 788
XspI CTAG 2 cut(s) 654, 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.