Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007322

Physical Location & Seq

Genomic Coordinates Reverse (-)

45272993 .. 45273376

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTGGTTGCGTATTGGTTAACGTTACTTGCTGAATGGACTACTTGGGTGCTATTGGTGGCCATGGCATTGTATGATCTTGCGGCGAGTTTTGCTCCTGTTGAGCCGTTGAGGTTGTTGGTGAAGCTTGCAATTTCTAGAGACGAAGAAATTCCAACTTTGATTTATGATGCCCTGCTTGTGGTGGCTGATCCCGATCCGAAGGGAGGTGTGGGTCGGAGGAGAGTTTGGAGAGATGGGAGGAACGAGAGTGAGAATAATGAAAATGTTGGTTCTGGTTTAGGCGAAAATGAAAGTTCCGGCTTGGGTGATAATGTGACTGCTAATGCAACTGTTTCATTCATACATAAGAATGGATCAAAGGGTCGGGTTAAGGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

5.13

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Presenilin	PF01080	1 - 99	2.4e-21	Presenilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29900
fragaria_vesca	FvH4_5g13800 FvH4_5g13800
malus_domestica	MD06G1225300.v1.1 MD14G1212200.v1.1
prunus_persica	Prupe.5G205400_v2.0.a1
pyrus_communis	pycom06g17980 pycom14g17580 pycom15g04200
rosa_chinensis	RchiOBHm_Chr7g0183141
rosa_laevigata	RLG00000005075 RLG00000009030
rosa_multiflora	Rmu_sc0001023.1_g000022 Rmu_ssc0000111.1_g000011
rosa_roxburghii	Rroxscaffold_3G00270720 Rroxscaffold_6G00424050
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh3DG071900 Rh4BG110000 Rh4CG124300 Rh7AG056500 Rh7BG055800 Rh7CG057200 Rh7DG056100
rosa_wichuraiana	Rw7G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	3 cut(s)	185, 191, 364
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	181, 206
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	185, 191, 364
AoxI	GGCC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	133, 320
BalI	TGGCCA	1 cut(s)	62
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 206
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	181, 206
BseRI	GAGGAG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	181, 206
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	62
Bsp143I	GATC	4 cut(s)	76, 190, 196, 356
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	62
BspPI	GGATC	3 cut(s)	185, 191, 364
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	4 cut(s)	76, 190, 196, 356
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	63
BstKTI	GATC	4 cut(s)	79, 193, 199, 359
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	76, 190, 196, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	129
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	5 cut(s)	62, 106, 127, 188, 303
CviKI_1	RGCY	5 cut(s)	62, 106, 127, 188, 303
DpnI	GATC	4 cut(s)	78, 192, 198, 358
DpnII	GATC	4 cut(s)	76, 190, 196, 356
EaeI	YGGCCR	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	67
FaiI	YATR	5 cut(s)	65, 75, 168, 344, 348
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	125
HpaI	GTTAAC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	2 cut(s)	133, 320
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	201, 219
Hpy188III	TCNNGA	2 cut(s)	138, 194
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	131, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	76, 190, 196, 356
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	111, 188, 261, 313
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	24, 316
MalI	GATC	4 cut(s)	78, 192, 198, 358
MboI	GATC	4 cut(s)	76, 190, 196, 356
MboII	GAAGA	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	2 cut(s)	132, 150
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	179, 197
MnlI	CCTC	4 cut(s)	105, 200, 213, 234
Mox20I	TGGCCA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	20, 372
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	76, 190, 196, 356
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	20, 372
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	4 cut(s)	76, 190, 196, 356
SetI	ASST	4 cut(s)	26, 116, 129, 211
SfaNI	GCATC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	132, 150
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	26
TasI	AATT	2 cut(s)	132, 150
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	20, 372
Tru9I	TTAA	2 cut(s)	20, 372
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	276, 306, 327, 331
XapI	RAATTY	1 cut(s)	150
XbaI	TCTAGA	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.