pycom15g04200

subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
2529907 .. 2531883
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g04200.1

Sequence Viewer

Length: 1533 bp
ATGATAAAAAAGATTTTGACATCTTTCAAAATTTTGCACTCTCAAATTAAATACTATTTTATTATACTATTTTCTTTTCTTTTTATTTTATTAAACTATTATTTTATGCCCCCTTCTTTCCAGTCCAAGCAGCTCTTCCACCAAAACACCTGCGAAACCTTTCTCTGTATGTATGCTGCTGGTGGTCCTTCTGCGCCACCATTGCCTAAGACGAGACCTCCTCGAACTCCTCATGGGACAATTCGTGGGTGCCCTCTTAAACGCCCTTGTTTTTGTCGCCGTCGTCACGTTCGTTTTGGTGCTCCTTTTTACCTCAGATGCACCAAGTTCCTCAAAATCTACATGGGTTTTTCGTCTTTTGTTGTTCTGGGGTTCATGGGCGGAGAAATTGCCCTGTTTTTTATTGAGGACTTTAATGTTTCGGTCGATTCGATTACTTTTGTTTTGGTGTTGTTCAATTTTTCTGTTGTTGGGGTTTTGGCGGCGTTCATGTCGAAAATGGCAATTTTCGTGACGCAGGGCTATTTGGTTGTGATTGGAATGCTGTTTGCTTATTGGTTTACATTGTTGCCCGAGTGGACAACTCGCCGACTTCCTCAAATCGTAGCGAGGATTCGAGTGGATGAGCAGCGCTTCTCAGGTGACAGAGGAGATAAAAAATATTTGAAGCTACTGTCGCTACTGTCAAATTTGACCGTAAGTGAGAGCTGCCATTTCATGTCATGTAATATTAAATTTGACTTCTCGGTTGAAAAACATTATAGCTGTCCTTTTTTACTGCTATTGACGCGGCTTCGCGTGGCGTTGCGCAGCGGACAACTCAAAGATTCGTGCCTACACGTTGCTTTCCAGTGGACCAAACCCAATCAAAATCATACACGTGTATGTCTCTCATGCATCCCAAGAAAATGGCCATGTCTGACCTCAGCTTTCTCGTGCCCCAATCTGAAATTTCCGGGCATTGAGTTGGGAGTTGGGGATTGTCCCAAATTTCTAAAAATAATGTTACATGTAACTGGAACGTTAATCTCCTTGAATACACTGTCTCCAATTAAAAAATTATTCCGTGACACCACAACATCGTATGCCAATTTCATTCCCATAATGTTTGAGTTAGTGCTTGTTTTGTTTTTTGTTCCTAATTTTGCGTTATTGTCGTTTATGATATTTAGGGGGAAAGCGTCAGGTATGCCGATCTCAAGTCCGAATAAAAGAGCAGGGAGAGGGTGTCAGGTAGTTAACATCCGGCACTCCTATCTTATGTCGAATCTTTGGGATGCGATCATACCAACTCATATTAATAGTAGAATGGATGATCTCCTAGGAAGCCTTCGTGTTGCATCCTCACAACTGACCCCACACGATGGGAAAAAGCTTTATTGTGTTTTGTCGTTTATGATATTTGACCGCGAGACCTCCTTCAAGATGGAACTCAACATCGTTAGAATTTCCTGTGCTCCAAACCCATGCTTTTCCTATGTTTGTAAAAATGCGTGGGAAGGAAAGCAAAGAAAGATAAATTATCCTTCTTAA

Protein Analysis

511

Amino Acids

58.44

Weight (kDa)

9.75

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Presenilin PF01080 103 - 195 1.3e-25 Presenilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc16I TGCGCA 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 1364
AccII CGCG 3 cut(s) 790, 798, 1410
AciI CCGC 5 cut(s) 381, 482, 790, 813, 1408
AclI AACGTT 1 cut(s) 1022
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 6 cut(s) 30, 688, 734, 950, 989, 1446
AcvI CACGTG 1 cut(s) 881
AfeI AGCGCT 1 cut(s) 632
AfiI CCNNNNNNNGG 1 cut(s) 1364
AflIII ACRYGT 4 cut(s) 838, 878, 880, 1009
AgsI TTSAA 6 cut(s) 28, 457, 667, 752, 1036, 1423
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 6 cut(s) 133, 670, 708, 765, 929, 1375
AluI AGCT 6 cut(s) 133, 670, 708, 765, 929, 1375
Alw21I GWGCWC 2 cut(s) 304, 1459
Alw26I GTCTC 4 cut(s) 208, 893, 1050, 1406
Ama87I CYCGRG 1 cut(s) 572
Aor51HI AGCGCT 1 cut(s) 632
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 5 cut(s) 130, 176, 628, 708, 810
ApoI RAATTY 6 cut(s) 30, 688, 734, 950, 989, 1446
AseI ATTAAT 1 cut(s) 1299
Asp700I GAANNNNTTC 1 cut(s) 159
AspA2I CCTAGG 1 cut(s) 1321
AspLEI GCGC 3 cut(s) 196, 633, 810
AspS9I GGNCC 2 cut(s) 185, 855
AsuC2I CCSGG 1 cut(s) 957
AsuHPI GGTGA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 2 cut(s) 185, 855
AvrII CCTAGG 1 cut(s) 1321
BaeGI GKGCMC 2 cut(s) 254, 941
BalI TGGCCA 1 cut(s) 913
BanI GGYRCC 1 cut(s) 249
BauI CACGAG 1 cut(s) 934
BbrPI CACGTG 1 cut(s) 881
Bbv12I GWGCWC 2 cut(s) 304, 1459
BbvCI CCTCAGC 1 cut(s) 925
BbvI GCAGC 5 cut(s) 142, 163, 640, 695, 822
BccI CCATC 2 cut(s) 1358, 1420
BceAI ACGGC 1 cut(s) 264
BcnI CCSGG 1 cut(s) 957
BcoDI GTCTC 4 cut(s) 208, 893, 1050, 1406
BfaI CTAG 1 cut(s) 1322
BfoI RGCGCY 1 cut(s) 634
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 7 cut(s) 131, 177, 483, 629, 709, 791, 811
BlnI CCTAGG 1 cut(s) 1321
BlsI GCNGC 7 cut(s) 132, 178, 484, 630, 710, 792, 812
Bme1390I CCNGG 1 cut(s) 957
Bme18I GGWCC 2 cut(s) 185, 855
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 185, 855
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 957
BmsI GCATC 4 cut(s) 308, 906, 1267, 1349
BplI GAGNNNNNCTC 2 cut(s) 205, 237
Bpu10I CCTNAGC 1 cut(s) 925
BpuEI CTTGAG 1 cut(s) 1183
BpuMI CCSGG 1 cut(s) 957
BsaAI YACGTR 1 cut(s) 881
BsaI GGTCTC 2 cut(s) 208, 1406
BsaJI CCNNGG 1 cut(s) 1321
BsaXI ACNNNNNCTCC 6 cut(s) 202, 232, 1030, 1060, 1213, 1243
Bsc4I CCNNNNNNNGG 1 cut(s) 1364
Bse1I ACTGG 3 cut(s) 121, 850, 1021
Bse3DI GCAATG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 1321
BseGI GGATG 6 cut(s) 628, 897, 1242, 1282, 1318, 1340
BseLI CCNNNNNNNGG 1 cut(s) 1364
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 3 cut(s) 328, 651, 939
BseNI ACTGG 3 cut(s) 121, 850, 1021
BseRI GAGGAG 3 cut(s) 210, 219, 663
BseSI GKGCMC 2 cut(s) 254, 941
BseXI GCAGC 5 cut(s) 142, 163, 640, 695, 822
Bsh1236I CGCG 3 cut(s) 790, 798, 1410
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 426
BsiHKAI GWGCWC 2 cut(s) 304, 1459
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 2 cut(s) 956, 1246
BslFI GGGAC 2 cut(s) 250, 969
BslI CCNNNNNNNGG 1 cut(s) 1364
BsmAI GTCTC 4 cut(s) 208, 893, 1050, 1406
BsmFI GGGAC 2 cut(s) 250, 969
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 1 cut(s) 913
Bso31I GGTCTC 2 cut(s) 208, 1406
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 4 cut(s) 254, 304, 941, 1459
Bsp143I GATC 3 cut(s) 1194, 1281, 1315
BspACI CCGC 5 cut(s) 381, 482, 790, 813, 1408
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 3 cut(s) 327, 650, 938
BspFNI CGCG 3 cut(s) 790, 798, 1410
BspLI GGNNCC 1 cut(s) 251
BspMI ACCTGC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 249
BspTNI GGTCTC 2 cut(s) 208, 1406
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 3 cut(s) 121, 850, 1021
BssECI CCNNGG 1 cut(s) 1321
BssMI GATC 3 cut(s) 1194, 1281, 1315
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 1 cut(s) 1321
Bst2BI CACGAG 1 cut(s) 934
Bst4CI ACNGT 4 cut(s) 675, 684, 697, 1044
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 881
BstDEI CTNAG 4 cut(s) 207, 314, 637, 925
BstF5I GGATG 6 cut(s) 628, 897, 1242, 1282, 1318, 1340
BstFNI CGCG 3 cut(s) 790, 798, 1410
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 3 cut(s) 196, 633, 810
BstKTI GATC 3 cut(s) 1197, 1284, 1318
BstMAI GTCTC 4 cut(s) 208, 893, 1050, 1406
BstMBI GATC 3 cut(s) 1194, 1281, 1315
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 3 cut(s) 202, 676, 787
BstNSI RCATGY 1 cut(s) 1013
BstSCI CCNGG 1 cut(s) 955
BstSLI GKGCMC 2 cut(s) 254, 941
BstUI CGCG 3 cut(s) 790, 798, 1410
BstV1I GCAGC 5 cut(s) 142, 163, 640, 695, 822
BstXI CCANNNNNNTGG 1 cut(s) 909
BsuRI GGCC 1 cut(s) 913
BtsCI GGATG 6 cut(s) 628, 897, 1242, 1282, 1318, 1340
BtsIMutI CAGTG 2 cut(s) 857, 1040
BveI ACCTGC 1 cut(s) 158
CfoI GCGC 3 cut(s) 196, 633, 810
Cfr13I GGNCC 2 cut(s) 185, 855
CseI GACGC 3 cut(s) 523, 796, 1170
DdeI CTNAG 4 cut(s) 207, 314, 637, 925
DpnI GATC 3 cut(s) 1196, 1283, 1317
DpnII GATC 3 cut(s) 1194, 1281, 1315
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 1321
Eco31I GGTCTC 2 cut(s) 208, 1406
Eco47I GGWCC 2 cut(s) 185, 855
Eco47III AGCGCT 1 cut(s) 632
Eco72I CACGTG 1 cut(s) 881
Eco88I CYCGRG 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 1321
EcoT22I ATGCAT 1 cut(s) 899
ErhI CCWWGG 1 cut(s) 1321
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 2 cut(s) 250, 969
Fnu4HI GCNGC 7 cut(s) 131, 177, 483, 629, 709, 791, 811
FokI GGATG 6 cut(s) 635, 884, 1229, 1289, 1325, 1327
Fsp4HI GCNGC 7 cut(s) 131, 177, 483, 629, 709, 791, 811
FspBI CTAG 1 cut(s) 1322
FspI TGCGCA 1 cut(s) 809
GlaI GCGC 3 cut(s) 195, 632, 809
GluI GCNGC 7 cut(s) 131, 177, 483, 629, 709, 791, 811
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 1 cut(s) 913
HapII CCGG 2 cut(s) 956, 1246
HgaI GACGC 3 cut(s) 523, 796, 1170
HhaI GCGC 3 cut(s) 196, 633, 810
Hin6I GCGC 3 cut(s) 194, 631, 808
HinP1I GCGC 3 cut(s) 194, 631, 808
HincII GTYRAC 1 cut(s) 1240
HindII GTYRAC 1 cut(s) 1240
HindIII AAGCTT 1 cut(s) 1373
HinfI GANTC 4 cut(s) 428, 613, 827, 1267
HpaI GTTAAC 1 cut(s) 1240
HpaII CCGG 2 cut(s) 956, 1246
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 4 cut(s) 561, 579, 855, 1240
Hpy188I TCNGA 4 cut(s) 317, 921, 948, 1206
Hpy188III TCNNGA 2 cut(s) 511, 1423
Hpy8I GTNNAC 4 cut(s) 561, 579, 855, 1240
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 5 cut(s) 123, 198, 1340, 1429, 1493
HpyCH4III ACNGT 4 cut(s) 675, 684, 697, 1044
HpyCH4IV ACGT 4 cut(s) 288, 840, 880, 1022
HpyCH4V TGCA 4 cut(s) 37, 321, 897, 1340
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 676, 787
HpyF3I CTNAG 4 cut(s) 207, 314, 637, 925
HpySE526I ACGT 4 cut(s) 288, 840, 880, 1022
HspAI GCGC 3 cut(s) 194, 631, 808
KspAI GTTAAC 1 cut(s) 1240
Kzo9I GATC 3 cut(s) 1194, 1281, 1315
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 307, 1462
Lsp1109I GCAGC 5 cut(s) 142, 163, 640, 695, 822
LweI GCATC 4 cut(s) 308, 906, 1267, 1349
MaeI CTAG 1 cut(s) 1322
MaeII ACGT 4 cut(s) 288, 840, 880, 1022
MaeIII GTNAC 6 cut(s) 284, 511, 641, 1005, 1012, 1067
MalI GATC 3 cut(s) 1196, 1283, 1317
MboI GATC 3 cut(s) 1194, 1281, 1315
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 4 cut(s) 254, 304, 941, 1459
MlsI TGGCCA 1 cut(s) 913
MluNI TGGCCA 1 cut(s) 913
Mox20I TGGCCA 1 cut(s) 913
Mph1103I ATGCAT 1 cut(s) 899
MroXI GAANNNNTTC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 913
MslI CAYNNNNRTG 2 cut(s) 879, 883
Msp20I TGGCCA 1 cut(s) 913
MspA1I CMGCKG 1 cut(s) 813
MspI CCGG 2 cut(s) 956, 1246
MspR9I CCNGG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 546
MvnI CGCG 3 cut(s) 790, 798, 1410
MwoI GCNNNNNNNGC 3 cut(s) 202, 676, 787
NciI CCSGG 1 cut(s) 957
NdeII GATC 3 cut(s) 1194, 1281, 1315
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 4 cut(s) 284, 511, 641, 1067
NsbI TGCGCA 1 cut(s) 809
NsiI ATGCAT 1 cut(s) 899
NspI RCATGY 1 cut(s) 1013
PaqCI CACCTGC 1 cut(s) 158
PciI ACATGT 1 cut(s) 1009
PciSI GCTCTTC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 289, 428
PctI GAATGC 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 4 cut(s) 428, 613, 827, 1267
PflMI CCANNNNNTGG 1 cut(s) 1364
PkrI GCNGC 7 cut(s) 132, 178, 484, 630, 710, 792, 812
PmaCI CACGTG 1 cut(s) 881
PmlI CACGTG 1 cut(s) 881
Ppu21I YACGTR 1 cut(s) 881
PscI ACATGT 1 cut(s) 1009
PshBI ATTAAT 1 cut(s) 1299
Psp1406I AACGTT 1 cut(s) 1022
PspCI CACGTG 1 cut(s) 881
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 185, 855
RseI CAYNNNNRTG 2 cut(s) 879, 883
SapI GCTCTTC 1 cut(s) 140
SatI GCNGC 7 cut(s) 131, 177, 483, 629, 709, 791, 811
Sau3AI GATC 3 cut(s) 1194, 1281, 1315
Sau96I GGNCC 2 cut(s) 185, 855
ScrFI CCNGG 1 cut(s) 957
SduI GDGCHC 4 cut(s) 254, 304, 941, 1459
SfaNI GCATC 4 cut(s) 308, 906, 1267, 1349
SinI GGWCC 2 cut(s) 185, 855
SmiMI CAYNNNNRTG 2 cut(s) 879, 883
SmlI CTYRAG 1 cut(s) 1198
SmoI CTYRAG 1 cut(s) 1198
SsiI CCGC 5 cut(s) 381, 482, 790, 813, 1408
SspI AATATT 2 cut(s) 662, 730
SspMI CTAG 1 cut(s) 1322
StyD4I CCNGG 1 cut(s) 955
StyI CCWWGG 1 cut(s) 1321
TaaI ACNGT 4 cut(s) 675, 684, 697, 1044
TaiI ACGT 4 cut(s) 291, 843, 883, 1025
TaqI TCGA 6 cut(s) 223, 426, 431, 494, 616, 1265
TaqII GACCGA 1 cut(s) 412
TauI GCSGC 2 cut(s) 485, 793
TfiI GAWTC 4 cut(s) 428, 613, 827, 1267
TscAI CASTG 2 cut(s) 857, 1047
TseFI GTSAC 4 cut(s) 284, 511, 641, 1067
TseI GCWGC 5 cut(s) 130, 176, 628, 708, 810
Tsp45I GTSAC 4 cut(s) 284, 511, 641, 1067
TspDTI ATGAA 4 cut(s) 364, 478, 706, 1084
TspGWI ACGGA 1 cut(s) 1055
TspRI CASTG 2 cut(s) 857, 1047
Van91I CCANNNNNTGG 1 cut(s) 1364
VpaK11BI GGWCC 2 cut(s) 185, 855
VspI ATTAAT 1 cut(s) 1299
XapI RAATTY 6 cut(s) 30, 688, 734, 950, 989, 1446
XceI RCATGY 1 cut(s) 1013
XmaJI CCTAGG 1 cut(s) 1321
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 1322
Zsp2I ATGCAT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.