Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007322

Physical Location & Seq

Genomic Coordinates Reverse (-)

24074420 .. 24075601

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGCAATTTGAATCTCAAAATTCTGGTGGCTTCGAAACCGGCGCGCACTGTTGTCCACCTTTCGTCTTCGCCGTTGTTCAATTTTGCTATTGTGGGTGTGTTGGCTGTGTTCGTGTCGAAAATGTCGATACCTGTGACTCAAGGCTATTTGGTAGTGATTGGAATGCTGGTTGCGTATTGGTTTACGTTGCTGCCTGAATGGACTACTTGGGTGCTGTTGGTGGCCATGGCATTGTATGATCTCGCGGCGGTTTTGCTCCCTGTTGAGCCGCCGAGGCTGTTGGTGGAGCTTGCGATTTCCAGAGACGAAGAAATTCCAACTTTGGTTTTTATGATGCCCTGCCTGTGGTGGCTGATCCCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

122

Amino Acids

13.61

Weight (kDa)

5.64

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Presenilin	PF01080	23 - 116	1e-30	Presenilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29900
fragaria_vesca	FvH4_5g13800 FvH4_5g13800
malus_domestica	MD06G1225300.v1.1 MD14G1212200.v1.1
prunus_persica	Prupe.5G205400_v2.0.a1
pyrus_communis	pycom06g17980 pycom14g17580 pycom15g04200
rosa_chinensis	RchiOBHm_Chr7g0183141
rosa_laevigata	RLG00000005075 RLG00000009030
rosa_multiflora	Rmu_sc0001023.1_g000022 Rmu_ssc0000111.1_g000011
rosa_roxburghii	Rroxscaffold_3G00270720 Rroxscaffold_6G00424050
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh3DG071900 Rh4BG110000 Rh4CG124300 Rh7AG056500 Rh7BG055800 Rh7CG057200 Rh7DG056100
rosa_wichuraiana	Rw7G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	46, 248
AciI	CCGC	3 cut(s)	248, 251, 272
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	21, 315
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	13, 82
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	21, 315
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	46, 48
AsuII	TTCGAA	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	194, 249, 272
BlsI	GCNGC	3 cut(s)	195, 250, 273
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	60
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	228, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	228, 275
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	348
BsePI	GCGCGC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	46, 248
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	241, 357, 363
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	3 cut(s)	248, 251, 272
BspANI	GGCC	1 cut(s)	227
BspFNI	CGCG	2 cut(s)	46, 248
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	228, 275
BssHII	GCGCGC	1 cut(s)	44
BssMI	GATC	3 cut(s)	241, 357, 363
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	46, 294
BstDSI	CCRYGG	1 cut(s)	228
BstFNI	CGCG	2 cut(s)	46, 248
BstHHI	GCGC	2 cut(s)	46, 48
BstKTI	GATC	3 cut(s)	244, 360, 366
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	241, 357, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstUI	CGCG	2 cut(s)	46, 248
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	46, 294
CfoI	GCGC	2 cut(s)	46, 48
Cfr10I	RCCGGY	1 cut(s)	40
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	8 cut(s)	32, 107, 147, 227, 271, 280, 292, 355
CviKI_1	RGCY	8 cut(s)	32, 107, 147, 227, 271, 280, 292, 355
DpnI	GATC	3 cut(s)	243, 359, 365
DpnII	GATC	3 cut(s)	241, 357, 363
EaeI	YGGCCR	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	232
FaiI	YATR	3 cut(s)	230, 240, 335
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	194, 249, 272
Fsp4HI	GCNGC	3 cut(s)	194, 249, 272
GlaI	GCGC	2 cut(s)	45, 47
GluI	GCNGC	3 cut(s)	194, 249, 272
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	2 cut(s)	46, 48
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	2 cut(s)	44, 46
HinP1I	GCGC	2 cut(s)	44, 46
HinfI	GANTC	2 cut(s)	13, 139
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	58, 186
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	2 cut(s)	303, 361
Hpy8I	GTNNAC	2 cut(s)	58, 186
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	2 cut(s)	44, 46
Kzo9I	GATC	3 cut(s)	241, 357, 363
LmnI	GCTCC	2 cut(s)	264, 289
LpnPI	CCDG	9 cut(s)	11, 54, 147, 155, 210, 276, 316, 355, 359
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	327
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	243, 359, 365
MboI	GATC	3 cut(s)	241, 357, 363
MboII	GAAGA	2 cut(s)	60, 323
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	4 cut(s)	7, 21, 82, 315
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	171
MvnI	CGCG	2 cut(s)	46, 248
MwoI	GCNNNNNNNGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	241, 357, 363
NlaIII	CATG	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	35
PauI	GCGCGC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 125
PctI	GAATGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	195, 250, 273
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PteI	GCGCGC	1 cut(s)	44
SatI	GCNGC	3 cut(s)	194, 249, 272
Sau3AI	GATC	3 cut(s)	241, 357, 363
SchI	GAGTC	1 cut(s)	133
SetI	ASST	4 cut(s)	63, 136, 191, 294
SfaNI	GCATC	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	7, 21, 82, 315
SsiI	CCGC	3 cut(s)	248, 251, 272
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	35, 119, 128
TasI	AATT	4 cut(s)	7, 21, 82, 315
TauI	GCSGC	2 cut(s)	251, 274
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	2 cut(s)	21, 315
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.