Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007322

Physical Location & Seq

Genomic Coordinates Forward (+)

16434058 .. 16435706

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCCCAAAATCCAAGACCCACAACCATTCTTGAATCTCTAGGCGAAGAACTTATCAGAATCATCACACCAGTATCAATCTGTATGTTGTTAGTGGTCATTTTGGTAACAATCTTAAACGCGGACTCATCTTCATCAGAAACAGTGACCTCCATAGCCACCATTGCTTACACTGAGGCCACCTCAGACTCTTCGTGGGACAAATTCGTAGGTGCCGTTTTGAACTCCCTTGTGTTTGTTGCTGTTGTCACTGTTGTCACGTTCGTTTTGGTCCTTCTTTTCTATCTCAGATGCACTGAGTTCTTGAAAATCTACATGGGTTTCTCTTCTTTTGTTGTGTTGGGGTTTATGGGCGGTGAAATTGCCTTGTTTCTGATTCAAGACTTCAATGTTCCCATTGATTCTATCACATTTCTTCTGGTTTTGTTCAATTTTACTGTTGTTGGTGTCTTGGCTGTGTTCATGTCAAAAATGGCAATTCTTGTCACACAAGCATATTTGGTTGTTATTGGAATGCTGGTTGCTTATTGGTTTACATTATTGCCTGAATGGACTACTTGGGTGCTTTTGGTTGCCATGGCCTTGTATGATCTTGCTGCGGTTTTGTTGCCTGTTGGGCCATTAAGGCTCTTGGTAGAGCTTGCAATATCTAGGGATGAAGAGATTCCTGCTTTGGTTTATGAGGCTAGGCCAGTAAATTCTCATGATTCCAGTGGTGGCGTGCGTCAGAGAAGAGTTTGGAGAGATAGGAGAAATGAGGATTCGAATAATGGGCCTCATTCCAATGAGAATATCAATTCTGTTTTGGCGGATAATGTAAATTCTAGGTCAAACTCTAATGTGAATGCCAATGACACTTCACATTCAAATTCAAATCCTGGTGAGTTTGGCAGTGGCCATAATGATTCGAGTTTGGTTAGAGCCGAAGAGGGGCGAATTCCGGATAGGGATCAAGAGCTTTCTGCGCCATTACTAGAACGGATAACAAATGTTGAGCAGCTTGGGCAGGAAGATGCTGTGGCAAGTGAAAGTTTGGTGCTGGAGGGTATTGGATTGGGGTCCTCTGGTTCAATCAAGCTGGGATTGGGAGACTTCATCTTCTACAGCGTTTTGGTTGGGAGGGCAGCAATGTATGATTTTATGACAGTGTATGCATGTTATCTTGCCATTATAGGTGGTCTGGGAATTACTTTGATGCTGCTGGCTTTGTATCAAAAAGCTTTGCCAGCTCTTCCTGTGTCAATAATGCTCGGCGTGGTGTTTTATATATTGACCCGGCTCTTGCTTGAAGTTTTTGTTGTACAATGTTCTTTGAACCTCATCATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

444

Amino Acids

48.46

Weight (kDa)

4.59

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29900
fragaria_vesca	FvH4_5g13800 FvH4_5g13800
malus_domestica	MD06G1225300.v1.1 MD14G1212200.v1.1
prunus_persica	Prupe.5G205400_v2.0.a1
pyrus_communis	pycom06g17980 pycom14g17580 pycom15g04200
rosa_chinensis	RchiOBHm_Chr7g0183141
rosa_laevigata	RLG00000005075 RLG00000009030
rosa_multiflora	Rmu_sc0001023.1_g000022 Rmu_ssc0000111.1_g000011
rosa_roxburghii	Rroxscaffold_3G00270720 Rroxscaffold_6G00424050
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh3DG071900 Rh4BG110000 Rh4CG124300 Rh7AG056500 Rh7BG055800 Rh7CG057200 Rh7DG056100
rosa_wichuraiana	Rw7G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	940
AciI	CCGC	4 cut(s)	122, 354, 599, 809
AclWI	GGATC	1 cut(s)	957
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	5 cut(s)	203, 697, 820, 868, 936
AfaI	GTAC	1 cut(s)	1302
AfiI	CCNNNNNNNGG	1 cut(s)	930
AjnI	CCWGG	1 cut(s)	877
AluBI	AGCT	6 cut(s)	640, 958, 1000, 1078, 1220, 1229
AluI	AGCT	6 cut(s)	640, 958, 1000, 1078, 1220, 1229
Alw26I	GTCTC	1 cut(s)	1083
AlwI	GGATC	1 cut(s)	957
Aor13HI	TCCGGA	1 cut(s)	940
AoxI	GGCC	7 cut(s)	3, 177, 579, 617, 689, 773, 895
ApeKI	GCWGC	4 cut(s)	596, 997, 1124, 1198
ApoI	RAATTY	5 cut(s)	203, 697, 820, 868, 936
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	5 cut(s)	4, 271, 617, 773, 1059
AsuC2I	CCSGG	1 cut(s)	1276
AsuHPI	GGTGA	2 cut(s)	368, 893
AsuII	TTCGAA	1 cut(s)	764
AvaII	GGWCC	2 cut(s)	271, 1059
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BalI	TGGCCA	1 cut(s)	897
BanI	GGYRCC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	583, 1009, 1136, 1185
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	879
BcnI	CCSGG	1 cut(s)	1276
BcoDI	GTCTC	1 cut(s)	1083
BfaI	CTAG	6 cut(s)	41, 651, 687, 825, 974, 1330
BfmI	CTRYAG	1 cut(s)	1102
BglI	GCCNNNNNGGC	2 cut(s)	616, 625
BisI	GCNGC	4 cut(s)	597, 998, 1125, 1199
BlsI	GCNGC	4 cut(s)	598, 999, 1126, 1200
Bme1390I	CCNGG	2 cut(s)	879, 1276
Bme18I	GGWCC	2 cut(s)	271, 1059
BmgT120I	GGNCC	5 cut(s)	4, 271, 617, 773, 1059
BmiI	GGNNCC	2 cut(s)	214, 1060
BmrFI	CCNGG	2 cut(s)	879, 1276
BmsI	GCATC	3 cut(s)	281, 1003, 1185
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	1 cut(s)	1061
Bpu14I	TTCGAA	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	1276
BsaBI	GATNNNNATC	1 cut(s)	948
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	940
Bsc4I	CCNNNNNNNGG	1 cut(s)	930
Bse1I	ACTGG	3 cut(s)	71, 692, 711
Bse3DI	GCAATG	2 cut(s)	162, 1134
Bse8I	GATNNNNATC	1 cut(s)	948
BseAI	TCCGGA	1 cut(s)	940
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	1 cut(s)	930
BseMI	GCAATG	2 cut(s)	162, 1134
BseMII	CTCAG	4 cut(s)	165, 198, 288, 301
BseNI	ACTGG	3 cut(s)	71, 692, 711
BseXI	GCAGC	4 cut(s)	583, 1009, 1136, 1185
BseYI	CCCAGC	1 cut(s)	1078
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	7 cut(s)	5, 179, 581, 619, 691, 775, 897
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	941, 1276
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	930
BsmAI	GTCTC	1 cut(s)	1083
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	2 cut(s)	519, 850
BsnI	GGCC	7 cut(s)	5, 179, 581, 619, 691, 775, 897
Bsp119I	TTCGAA	1 cut(s)	764
Bsp13I	TCCGGA	1 cut(s)	940
Bsp1407I	TGTACA	1 cut(s)	1300
Bsp143I	GATC	2 cut(s)	589, 949
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	4 cut(s)	122, 354, 599, 809
BspANI	GGCC	7 cut(s)	5, 179, 581, 619, 691, 775, 897
BspCNI	CTCAG	4 cut(s)	166, 197, 289, 300
BspEI	TCCGGA	1 cut(s)	940
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	214, 1060
BspPI	GGATC	1 cut(s)	957
BspQI	GCTCTTC	1 cut(s)	1236
BspT104I	TTCGAA	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	162, 1134
BsrGI	TGTACA	1 cut(s)	1300
BsrI	ACTGG	3 cut(s)	71, 692, 711
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	2 cut(s)	589, 949
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	4 cut(s)	145, 253, 439, 1147
Bst6I	CTCTTC	6 cut(s)	196, 331, 654, 727, 921, 1236
BstAUI	TGTACA	1 cut(s)	1300
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	4 cut(s)	642, 722, 1203, 1227
BstDEI	CTNAG	4 cut(s)	174, 184, 287, 297
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	2 cut(s)	592, 952
BstMAI	GTCTC	1 cut(s)	1083
BstMBI	GATC	2 cut(s)	589, 949
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 616, 625, 964, 1003, 1226
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	1158
BstSCI	CCNGG	2 cut(s)	877, 1274
BstSFI	CTRYAG	1 cut(s)	1102
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	583, 1009, 1136, 1185
BsuRI	GGCC	7 cut(s)	5, 179, 581, 619, 691, 775, 897
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	7 cut(s)	150, 171, 249, 294, 718, 898, 1152
Cac8I	GCNNGC	4 cut(s)	642, 722, 1203, 1227
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	1 cut(s)	967
Cfr13I	GGNCC	5 cut(s)	4, 271, 617, 773, 1059
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	1 cut(s)	1301
CviAII	CATG	6 cut(s)	316, 463, 577, 704, 1155, 1324
CviQI	GTAC	1 cut(s)	1301
DdeI	CTNAG	4 cut(s)	174, 184, 287, 297
DpnI	GATC	2 cut(s)	591, 951
DpnII	GATC	2 cut(s)	589, 949
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	6 cut(s)	196, 331, 654, 727, 921, 1236
EarI	CTCTTC	6 cut(s)	196, 331, 654, 727, 921, 1236
EciI	GGCGGA	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	271, 1059
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRI	GAATTC	1 cut(s)	936
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	1156
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	6 cut(s)	319, 466, 580, 707, 1158, 1327
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	6 cut(s)	315, 462, 576, 703, 1154, 1323
Fnu4HI	GCNGC	4 cut(s)	597, 998, 1125, 1199
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	4 cut(s)	597, 998, 1125, 1199
FspBI	CTAG	6 cut(s)	41, 651, 687, 825, 974, 1330
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	4 cut(s)	597, 998, 1125, 1199
GsaI	CCCAGC	1 cut(s)	1082
GsuI	CTGGAG	1 cut(s)	1061
HaeIII	GGCC	7 cut(s)	5, 179, 581, 619, 691, 775, 897
HapII	CCGG	2 cut(s)	941, 1276
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	967
Hin1II	CATG	6 cut(s)	319, 466, 580, 707, 1158, 1327
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HindIII	AAGCTT	1 cut(s)	1218
HpaII	CCGG	2 cut(s)	941, 1276
HphI	GGTGA	2 cut(s)	368, 893
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	6 cut(s)	59, 139, 187, 290, 375, 729
Hpy188III	TCNNGA	6 cut(s)	32, 304, 380, 704, 941, 953
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	4 cut(s)	145, 253, 439, 1147
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	294, 644, 1154
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 616, 625, 964, 1003, 1226
HpyF3I	CTNAG	4 cut(s)	174, 184, 287, 297
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	6 cut(s)	319, 466, 580, 707, 1158, 1327
HspAI	GCGC	1 cut(s)	965
Kpn2I	TCCGGA	1 cut(s)	940
Kzo9I	GATC	2 cut(s)	589, 949
LguI	GCTCTTC	1 cut(s)	1236
Lsp1109I	GCAGC	4 cut(s)	583, 1009, 1136, 1185
LweI	GCATC	3 cut(s)	281, 1003, 1185
MaeI	CTAG	6 cut(s)	41, 651, 687, 825, 974, 1330
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	5 cut(s)	106, 145, 247, 256, 484
MalI	GATC	2 cut(s)	591, 951
MboI	GATC	2 cut(s)	589, 949
MlsI	TGGCCA	1 cut(s)	897
MluNI	TGGCCA	1 cut(s)	897
MlyI	GAGTC	2 cut(s)	119, 182
Mox20I	TGGCCA	1 cut(s)	897
Mph1103I	ATGCAT	1 cut(s)	1156
MroI	TCCGGA	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	2 cut(s)	116, 623
MslI	CAYNNNNRTG	1 cut(s)	783
Msp20I	TGGCCA	1 cut(s)	897
MspI	CCGG	2 cut(s)	941, 1276
MspR9I	CCNGG	2 cut(s)	879, 1276
Mva1269I	GAATGC	2 cut(s)	519, 850
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	6 cut(s)	164, 616, 625, 964, 1003, 1226
NciI	CCSGG	1 cut(s)	1276
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	589, 949
NlaIII	CATG	6 cut(s)	319, 466, 580, 707, 1158, 1327
NlaIV	GGNNCC	2 cut(s)	214, 1060
NmeAIII	GCCGAG	1 cut(s)	1230
NmuCI	GTSAC	4 cut(s)	145, 247, 256, 484
NsiI	ATGCAT	1 cut(s)	1156
NspI	RCATGY	1 cut(s)	1158
NspV	TTCGAA	1 cut(s)	764
PagI	TCATGA	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	1236
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	2 cut(s)	519, 850
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	8 cut(s)	35, 60, 376, 401, 664, 707, 761, 905
PkrI	GCNGC	4 cut(s)	598, 999, 1126, 1200
PleI	GAGTC	2 cut(s)	119, 182
PpsI	GAGTC	2 cut(s)	119, 182
PpuMI	RGGWCCY	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	1 cut(s)	877
PspFI	CCCAGC	1 cut(s)	1078
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	2 cut(s)	214, 1060
PspPI	GGNCC	5 cut(s)	4, 271, 617, 773, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
RsaI	GTAC	1 cut(s)	1302
RsaNI	GTAC	1 cut(s)	1301
RseI	CAYNNNNRTG	1 cut(s)	783
SapI	GCTCTTC	1 cut(s)	1236
SaqAI	TTAA	2 cut(s)	116, 623
SatI	GCNGC	4 cut(s)	597, 998, 1125, 1199
Sau3AI	GATC	2 cut(s)	589, 949
Sau96I	GGNCC	5 cut(s)	4, 271, 617, 773, 1059
SchI	GAGTC	2 cut(s)	119, 182
ScrFI	CCNGG	2 cut(s)	879, 1276
SfaNI	GCATC	3 cut(s)	281, 1003, 1185
SfcI	CTRYAG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	2 cut(s)	271, 1059
SmiMI	CAYNNNNRTG	1 cut(s)	783
SsiI	CCGC	4 cut(s)	122, 354, 599, 809
SspMI	CTAG	6 cut(s)	41, 651, 687, 825, 974, 1330
StyD4I	CCNGG	2 cut(s)	877, 1274
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	4 cut(s)	145, 253, 439, 1147
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	764, 908
TatI	WGTACW	1 cut(s)	1300
TfiI	GAWTC	8 cut(s)	35, 60, 376, 401, 664, 707, 761, 905
Tru1I	TTAA	2 cut(s)	116, 623
Tru9I	TTAA	2 cut(s)	116, 623
TscAI	CASTG	7 cut(s)	150, 178, 256, 301, 718, 898, 1152
TseFI	GTSAC	4 cut(s)	145, 247, 256, 484
TseI	GCWGC	4 cut(s)	596, 997, 1124, 1198
Tsp45I	GTSAC	4 cut(s)	145, 247, 256, 484
TspDTI	ATGAA	4 cut(s)	123, 451, 672, 1084
TspGWI	ACGGA	1 cut(s)	994
TspRI	CASTG	7 cut(s)	150, 178, 256, 301, 718, 898, 1152
VpaK11BI	GGWCC	2 cut(s)	271, 1059
XapI	RAATTY	5 cut(s)	203, 697, 820, 868, 936
XceI	RCATGY	1 cut(s)	1158
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	6 cut(s)	41, 651, 687, 825, 974, 1330
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.