Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007322

Physical Location & Seq

Genomic Coordinates Reverse (-)

63265674 .. 63267253

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCCCAAAACCCAAGACCCAGAAGCATTCTCGAAACTCTGGGCGAAGAACTCGTCAGAATCATCACCCCTGTCTCCATCTGCATGTTACTCGTGGTCATATTGGTCTCGGTTTTAAGCTCCGATTCATCTTCAACCGTCACCGTTAATTCCTTTGCCACCATTGCTTACACGGAGACCACCTCGGACTCCACCTGGGACAAATTCATGCACACTAAGTTCTTGAAAGCCTACATGGGCTTCTCTTCGTTTATTGTGTTGGGCTTTATGGGCGGCGAGATTGCTTTGTTTTTGATTGAGGATTTTAGTGTTCCGATTGATTGTGTCACGTTTTTGGTGGTGTTGTTCAATTTTGCTGTCGTGGGTGTGTTGGCTGTGTTCATGTCGAAAATGCCGATACTTGTGACTCAAGGCTACTTGGTTGTGATTGGGATGCTGGTTGCGTATTGGTTTACGTTGCTGCCTGAGTGGACTACTTGGGTGCTGTTGGTGGCCATGGCATTGTATGATCTCGCCGCGGTTTTGCTGCCTGTCGGGCCGCTGAGGCTGTTGGTGGAGCTTGCGATTTCGAGAGAGACGAAGAAATTCCAGCTTTGGTTTATGAGGCCCGGCCTGTTTTGGCTTCCCAGGATCGGAGGGGAGAATGGGAGTACCGGGTTGGGTGATAATGTGACTGCTAATGTTGAATTTGGTAACAGGAATGATTTGAGTTTGGTTAGGGTTGAAGAGGGGAGGGTTCCGCATAGGGGTGAGCTTTCTGCGCCATTACTAGAGCATATAGCAGGTGTTCAGCAGCGTGGGCAGGGTGATGATGTGTCAGTTGACAGTATGTTGCTGGAGGGTATTGGATTGGGATCTTCTGGTTCAATCAAGTTGGGATTGGGAGACTTCATATTCTATAGTGTTTTAGTTGGGAGGGCGGCGATGTATGATTTTATGACAGTGTATGCTTGTTATCTCGCTATTATAGGCGGTTTGGGAGTTACTTTGATACTGCTGGCTTTGTATCAGAAAGCTTTGCCAGCTCTTCCTGTGTCAATAATGCTCGGTCTCTTCACACTTGGATATCAAAGAAATAATGAGGCACTGGAAGATGGTCACTATGCACATTGGGAGGAGGATCGAAGTTCAAACCGTAGTTCAAAGGTCTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

385

Amino Acids

42.29

Weight (kDa)

5.04

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Presenilin	PF01080	14 - 71	5.4e-06	Presenilin
Presenilin	PF01080	69 - 194	6.9e-45	Presenilin
Presenilin	PF01080	286 - 353	1.5e-34	Presenilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29900
fragaria_vesca	FvH4_5g13800 FvH4_5g13800
malus_domestica	MD06G1225300.v1.1 MD14G1212200.v1.1
prunus_persica	Prupe.5G205400_v2.0.a1
pyrus_communis	pycom06g17980 pycom14g17580 pycom15g04200
rosa_chinensis	RchiOBHm_Chr7g0183141
rosa_laevigata	RLG00000005075 RLG00000009030
rosa_multiflora	Rmu_sc0001023.1_g000022 Rmu_ssc0000111.1_g000011
rosa_roxburghii	Rroxscaffold_3G00270720 Rroxscaffold_6G00424050
rosa_rugosa	Rorug06G0453800
rosa_samantha	Rh3DG071900 Rh4BG110000 Rh4CG124300 Rh7AG056500 Rh7BG055800 Rh7CG057200 Rh7DG056100
rosa_wichuraiana	Rw7G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AccII	CGCG	1 cut(s)	518
AciI	CCGC	7 cut(s)	273, 516, 518, 539, 740, 920, 972
AclWI	GGATC	3 cut(s)	638, 862, 1128
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	203, 584, 686
AfaI	GTAC	1 cut(s)	652
AfiI	CCNNNNNNNGG	2 cut(s)	632, 746
AgsI	TTSAA	8 cut(s)	135, 226, 349, 686, 725, 867, 1131, 1143
AjnI	CCWGG	2 cut(s)	194, 626
AluBI	AGCT	6 cut(s)	120, 559, 592, 754, 1016, 1025
AluI	AGCT	6 cut(s)	120, 559, 592, 754, 1016, 1025
Alw26I	GTCTC	6 cut(s)	79, 112, 170, 569, 879, 1055
AlwI	GGATC	3 cut(s)	638, 862, 1128
AoxI	GGCC	5 cut(s)	3, 492, 536, 605, 610
ApeKI	GCWGC	3 cut(s)	460, 526, 793
ApoI	RAATTY	3 cut(s)	203, 584, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	3 cut(s)	4, 536, 606
AsuC2I	CCSGG	2 cut(s)	609, 655
AsuHPI	GGTGA	5 cut(s)	58, 133, 674, 761, 818
BalI	TGGCCA	1 cut(s)	494
BauI	CACGAG	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	447, 513, 805
BccI	CCATC	2 cut(s)	86, 1088
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	2 cut(s)	196, 628
BcnI	CCSGG	2 cut(s)	609, 655
BcoDI	GTCTC	6 cut(s)	79, 112, 170, 569, 879, 1055
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	1 cut(s)	898
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	2 cut(s)	535, 544
BisI	GCNGC	7 cut(s)	274, 461, 516, 527, 539, 794, 921
BlsI	GCNGC	7 cut(s)	275, 462, 517, 528, 540, 795, 922
Bme1390I	CCNGG	4 cut(s)	196, 609, 628, 655
BmgT120I	GGNCC	3 cut(s)	4, 536, 606
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	4 cut(s)	196, 609, 628, 655
BmsI	GCATC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	1 cut(s)	857
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	2 cut(s)	609, 655
BsaBI	GATNNNNATC	1 cut(s)	853
BsaI	GGTCTC	3 cut(s)	112, 170, 1055
BsaJI	CCNNGG	5 cut(s)	183, 195, 495, 516, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 746
Bse1I	ACTGG	1 cut(s)	1092
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	853
BseBI	CCWGG	2 cut(s)	196, 628
BseDI	CCNNGG	5 cut(s)	183, 195, 495, 516, 626
BseGI	GGATG	1 cut(s)	438
BseJI	GATNNNNATC	1 cut(s)	853
BseLI	CCNNNNNNNGG	2 cut(s)	632, 746
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	456, 533
BseNI	ACTGG	1 cut(s)	1092
BseRI	GAGGAG	1 cut(s)	1130
BseXI	GCAGC	3 cut(s)	447, 513, 805
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	5 cut(s)	5, 494, 538, 607, 612
BsiSI	CCGG	2 cut(s)	609, 654
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	632, 746
BsmAI	GTCTC	6 cut(s)	79, 112, 170, 569, 879, 1055
BsmBI	CGTCTC	1 cut(s)	569
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	5 cut(s)	5, 494, 538, 607, 612
Bso31I	GGTCTC	3 cut(s)	112, 170, 1055
Bsp143I	GATC	4 cut(s)	508, 630, 854, 1120
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	7 cut(s)	273, 516, 518, 539, 740, 920, 972
BspANI	GGCC	5 cut(s)	5, 494, 538, 607, 612
BspCNI	CTCAG	2 cut(s)	457, 534
BspFNI	CGCG	1 cut(s)	518
BspLI	GGNNCC	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	638, 862, 1128
BspQI	GCTCTTC	1 cut(s)	1032
BspTNI	GGTCTC	3 cut(s)	112, 170, 1055
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	1092
BssECI	CCNNGG	5 cut(s)	183, 195, 495, 516, 626
BssMI	GATC	4 cut(s)	508, 630, 854, 1120
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	2 cut(s)	196, 628
Bst4CI	ACNGT	5 cut(s)	139, 145, 827, 943, 1136
Bst6I	CTCTTC	4 cut(s)	250, 720, 1032, 1058
BstC8I	GCNNGC	3 cut(s)	561, 999, 1023
BstDEI	CTNAG	3 cut(s)	216, 465, 542
BstDSI	CCRYGG	2 cut(s)	495, 516
BstF5I	GGATG	1 cut(s)	438
BstFNI	CGCG	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	4 cut(s)	511, 633, 857, 1123
BstMAI	GTCTC	6 cut(s)	79, 112, 170, 569, 879, 1055
BstMBI	GATC	4 cut(s)	508, 630, 854, 1120
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 270, 535, 544, 760, 799, 1022
BstNI	CCWGG	2 cut(s)	196, 628
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	4 cut(s)	194, 607, 626, 653
BstSFI	CTRYAG	1 cut(s)	898
BstUI	CGCG	1 cut(s)	518
BstV1I	GCAGC	3 cut(s)	447, 513, 805
BstX2I	RGATCY	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	854
BsuRI	GGCC	5 cut(s)	5, 494, 538, 607, 612
BtgI	CCRYGG	2 cut(s)	495, 516
BtgZI	GCGATG	1 cut(s)	938
BtsCI	GGATG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	948, 1085
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	3 cut(s)	561, 999, 1023
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	3 cut(s)	4, 536, 606
Cfr42I	CCGCGG	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	5 cut(s)	85, 208, 235, 382, 496
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	3 cut(s)	216, 465, 542
DpnI	GATC	4 cut(s)	510, 632, 856, 1122
DpnII	GATC	4 cut(s)	508, 630, 854, 1120
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	4 cut(s)	250, 720, 1032, 1058
EarI	CTCTTC	4 cut(s)	250, 720, 1032, 1058
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	3 cut(s)	112, 170, 1055
Eco32I	GATATC	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	194, 626
EcoRV	GATATC	1 cut(s)	1067
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	5 cut(s)	88, 211, 238, 385, 499
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	5 cut(s)	84, 207, 234, 381, 495
Fnu4HI	GCNGC	7 cut(s)	274, 461, 516, 527, 539, 794, 921
FokI	GGATG	1 cut(s)	445
Fsp4HI	GCNGC	7 cut(s)	274, 461, 516, 527, 539, 794, 921
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	7 cut(s)	274, 461, 516, 527, 539, 794, 921
GsuI	CTGGAG	1 cut(s)	857
HaeIII	GGCC	5 cut(s)	5, 494, 538, 607, 612
HapII	CCGG	2 cut(s)	609, 654
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	5 cut(s)	88, 211, 238, 385, 499
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	1014
HinfI	GANTC	4 cut(s)	60, 125, 188, 406
HpaII	CCGG	2 cut(s)	609, 654
HphI	GGTGA	5 cut(s)	58, 133, 674, 761, 818
Hpy166II	GTNNAC	3 cut(s)	453, 471, 823
Hpy188I	TCNGA	6 cut(s)	59, 124, 187, 315, 635, 1011
Hpy188III	TCNNGA	3 cut(s)	32, 223, 570
Hpy8I	GTNNAC	3 cut(s)	453, 471, 823
HpyCH4III	ACNGT	5 cut(s)	139, 145, 827, 943, 1136
HpyCH4IV	ACGT	2 cut(s)	329, 455
HpyCH4V	TGCA	3 cut(s)	84, 211, 1106
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 270, 535, 544, 760, 799, 1022
HpyF3I	CTNAG	3 cut(s)	216, 465, 542
HpySE526I	ACGT	2 cut(s)	329, 455
Hsp92II	CATG	5 cut(s)	88, 211, 238, 385, 499
HspAI	GCGC	1 cut(s)	761
KspI	CCGCGG	1 cut(s)	519
Kzo9I	GATC	4 cut(s)	508, 630, 854, 1120
LguI	GCTCTTC	1 cut(s)	1032
LmnI	GCTCC	2 cut(s)	125, 556
Lsp1109I	GCAGC	3 cut(s)	447, 513, 805
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	2 cut(s)	329, 455
MaeIII	GTNAC	8 cut(s)	87, 139, 325, 403, 670, 692, 982, 1097
MalI	GATC	4 cut(s)	510, 632, 856, 1122
MboI	GATC	4 cut(s)	508, 630, 854, 1120
MboII	GAAGA	9 cut(s)	59, 123, 237, 592, 737, 849, 1019, 1045, 1103
MflI	RGATCY	1 cut(s)	854
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	5 cut(s)	148, 203, 349, 584, 686
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	182, 400
Mox20I	TGGCCA	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	3 cut(s)	116, 147, 1156
MslI	CAYNNNNRTG	2 cut(s)	83, 747
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	518, 541
MspI	CCGG	2 cut(s)	609, 654
MspR9I	CCNGG	4 cut(s)	196, 609, 628, 655
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	196, 628
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	7 cut(s)	164, 270, 535, 544, 760, 799, 1022
NciI	CCSGG	2 cut(s)	609, 655
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	508, 630, 854, 1120
NlaIII	CATG	5 cut(s)	88, 211, 238, 385, 499
NlaIV	GGNNCC	1 cut(s)	738
NmuCI	GTSAC	5 cut(s)	139, 325, 403, 670, 1097
NspI	RCATGY	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	1032
PcsI	WCGNNNNNNNCGW	2 cut(s)	392, 575
PctI	GAATGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	60, 125
PkrI	GCNGC	7 cut(s)	275, 462, 517, 528, 540, 795, 922
PleI	GAGTC	2 cut(s)	182, 400
PpsI	GAGTC	2 cut(s)	182, 400
Psp6I	CCWGG	2 cut(s)	194, 626
PspGI	CCWGG	2 cut(s)	194, 626
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	3 cut(s)	4, 536, 606
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
RseI	CAYNNNNRTG	2 cut(s)	83, 747
SacII	CCGCGG	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	1032
SaqAI	TTAA	3 cut(s)	116, 147, 1156
SatI	GCNGC	7 cut(s)	274, 461, 516, 527, 539, 794, 921
Sau3AI	GATC	4 cut(s)	508, 630, 854, 1120
Sau96I	GGNCC	3 cut(s)	4, 536, 606
SchI	GAGTC	2 cut(s)	182, 400
ScrFI	CCNGG	4 cut(s)	196, 609, 628, 655
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	898
Sfr303I	CCGCGG	1 cut(s)	519
SgrBI	CCGCGG	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	83, 747
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	5 cut(s)	148, 203, 349, 584, 686
SsiI	CCGC	7 cut(s)	273, 516, 518, 539, 740, 920, 972
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	4 cut(s)	194, 607, 626, 653
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	5 cut(s)	139, 145, 827, 943, 1136
TaiI	ACGT	2 cut(s)	332, 458
TaqI	TCGA	4 cut(s)	33, 386, 569, 1123
TaqII	GACCGA	1 cut(s)	1037
TasI	AATT	5 cut(s)	148, 203, 349, 584, 686
TauI	GCSGC	4 cut(s)	276, 518, 541, 923
TfiI	GAWTC	2 cut(s)	60, 125
Tru1I	TTAA	3 cut(s)	116, 147, 1156
Tru9I	TTAA	3 cut(s)	116, 147, 1156
TscAI	CASTG	2 cut(s)	948, 1092
TseFI	GTSAC	5 cut(s)	139, 325, 403, 670, 1097
TseI	GCWGC	3 cut(s)	460, 526, 793
Tsp45I	GTSAC	5 cut(s)	139, 325, 403, 670, 1097
TspDTI	ATGAA	4 cut(s)	117, 196, 370, 880
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	948, 1092
XapI	RAATTY	3 cut(s)	203, 584, 686
XceI	RCATGY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.