Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

13116448 .. 13118970

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCATCAAATTTTGTGAAACTCGGCAGTCAATTTATCGGCAAACTCACCCGAGTAACTAGCTTACCAGCTCATCACACTGATTTGGTCCAAAGAGTTTCGATTTTAAAAGACGAGCTTTTAACGATTGGTAACAGTAAGGAGAAGTTCCAAAATGTTTTGGATCAGAAAGGGCAATGGTTGTTTAGAACTTATCGTGATGGTGCTGGGATCTTAGAGCTTATGGATCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGACAAAAGGATTATTGTATCCCCTTGACATCGGAGGAGTATGCTAAAGGAATCAAAATTGCGGGTAGAGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAATGCAGACTGCTTCAGTTTATAATTCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGAGGAATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCGCCGACCGTTGTGACATATAATATTCTAGTATCTGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAGCTTTTGAAGAGTTACAAAAAGTGAAGCTTCCTCCTAATTCTGTCACTTACAACTTTCTAATTGCGGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGAAGAGGGGTCCAGTTGAGCCTGACACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAAATTCTGGGAATTTGAATAGGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTGTAAACAGTGGTCCTTTGGTCAGAGCTATGATCTGTGCATATTGTAAGAAAGCTGTTGAGGATAGAGTCCAAAAGATTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTTGGTTGAATGTGCTTTTGATTCGACTATATGCTCAAGAAGACTTTGTGGAAGCAATGGAGAGTAAAATCAACGAGGCATTTGAGCAGAAGACATGTGTTAATAAGTCAAGTATCATGCGAGCAATCATTGCAGCTTACTTCAGGTGTAATGAAGTTGACAATCTTGCTAATTTCGTCAAGCGTGCTGAGTCTGCTGGGTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGTATGGATCCCAAAAACGCTTTGAAGAAATGGAAGGTGTTGTAAATGAGATGGCAGAGACCAATTATGGGCTTGTAACTAAAACGTTCGCCATTATGATTAAAGCTTATAAAAACCATGGAATGGAGTCAGATGCTGAGAAAGTGAAGGGAAAGATGCTGAAACGTGGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

452

Amino Acids

52.03

Weight (kDa)

8.73

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	139 - 183	2.8e-07	PPR repeat family
PPR_3	PF13812	140 - 185	6.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	172 - 216	5.1e-08	PPR repeat family
PPR_2	PF13041	207 - 256	8.2e-14	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	423, 1293
AccB7I	CCANNNNNTGG	1 cut(s)	1306
AccI	GTMKAC	1 cut(s)	556
AciI	CCGC	3 cut(s)	341, 389, 650
AclI	AACGTT	1 cut(s)	1268
AclWI	GGATC	5 cut(s)	171, 218, 234, 1185, 1198
AcsI	RAATTY	4 cut(s)	10, 766, 775, 907
AcuI	CTGAAG	3 cut(s)	242, 399, 1069
AfiI	CCNNNNNNNGG	3 cut(s)	672, 1251, 1306
AflIII	ACRYGT	2 cut(s)	444, 1037
AgsI	TTSAA	6 cut(s)	593, 698, 781, 905, 952, 1208
AjnI	CCWGG	1 cut(s)	665
Alw26I	GTCTC	1 cut(s)	1235
AlwI	GGATC	5 cut(s)	171, 218, 234, 1185, 1198
AlwNI	CAGNNNCTG	1 cut(s)	1319
Ama87I	CYCGRG	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	584, 1076
ApoI	RAATTY	4 cut(s)	10, 766, 775, 907
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	88, 713, 836
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	3 cut(s)	88, 713, 836
BamHI	GGATCC	1 cut(s)	1190
BbsI	GAAGAC	3 cut(s)	911, 990, 1040
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	596, 1088
BccI	CCATC	4 cut(s)	194, 559, 781, 1228
BciT130I	CCWGG	1 cut(s)	667
BciVI	GTATCC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	1235
BfaI	CTAG	3 cut(s)	60, 351, 539
BfuI	GTATCC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	1157
BisI	GCNGC	3 cut(s)	390, 585, 1077
BlsI	GCNGC	3 cut(s)	391, 586, 1078
Bme1390I	CCNGG	1 cut(s)	667
Bme18I	GGWCC	3 cut(s)	88, 713, 836
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	88, 713, 836
BmiI	GGNNCC	2 cut(s)	714, 1192
BmrFI	CCNGG	1 cut(s)	667
BmsI	GCATC	3 cut(s)	14, 1306, 1329
BpiI	GAAGAC	3 cut(s)	911, 990, 1040
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	963
BsaBI	GATNNNNATC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	1235
BsaJI	CCNNGG	2 cut(s)	944, 1300
Bsc4I	CCNNNNNNNGG	3 cut(s)	672, 1251, 1306
Bse1I	ACTGG	1 cut(s)	716
Bse3DI	GCAATG	3 cut(s)	182, 1005, 1071
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	2 cut(s)	944, 1300
BseGI	GGATG	1 cut(s)	792
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	3 cut(s)	672, 1251, 1306
BseMI	GCAATG	3 cut(s)	182, 1005, 1071
BseMII	CTCAG	3 cut(s)	453, 1122, 1311
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	289, 329
BseXI	GCAGC	2 cut(s)	596, 1088
BseYI	CCCAGC	2 cut(s)	206, 1139
Bsh1285I	CGRYCG	1 cut(s)	519
BsiEI	CGRYCG	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	672, 1251, 1306
BsmAI	GTCTC	1 cut(s)	1235
BsmI	GAATGC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	1235
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
Bsp19I	CCATGG	1 cut(s)	1300
BspACI	CCGC	3 cut(s)	341, 389, 650
BspCNI	CTCAG	3 cut(s)	454, 1123, 1312
BspHI	TCATGA	1 cut(s)	1179
BspLI	GGNNCC	2 cut(s)	714, 1192
BspPI	GGATC	5 cut(s)	171, 218, 234, 1185, 1198
BspQI	GCTCTTC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	1235
BsrDI	GCAATG	3 cut(s)	182, 1005, 1071
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	2 cut(s)	944, 1300
BssMI	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
BssT1I	CCWWGG	2 cut(s)	944, 1300
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	4 cut(s)	137, 520, 833, 1172
Bst6I	CTCTTC	3 cut(s)	261, 588, 701
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	459, 1065, 1128
BstDEI	CTNAG	6 cut(s)	214, 250, 393, 462, 1131, 1320
BstDSI	CCRYGG	1 cut(s)	1300
BstF5I	GGATG	1 cut(s)	792
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	8 cut(s)	166, 213, 229, 817, 858, 1160, 1179, 1193
BstMAI	GTCTC	1 cut(s)	1235
BstMBI	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 511, 1073, 1136
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	2 cut(s)	448, 1041
BstSCI	CCNGG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	596, 1088
BstV2I	GAAGAC	3 cut(s)	911, 990, 1040
BstX2I	RGATCY	3 cut(s)	210, 1157, 1190
BstYI	RGATCY	3 cut(s)	210, 1157, 1190
BsuI	GTATCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	1300
BtsCI	GGATG	1 cut(s)	792
BtsIMutI	CAGTG	3 cut(s)	78, 838, 1168
Cac8I	GCNNGC	3 cut(s)	459, 1065, 1128
CaiI	CAGNNNCTG	1 cut(s)	1319
CciI	TCATGA	1 cut(s)	1179
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	88, 713, 836
CviAII	CATG	6 cut(s)	445, 658, 1038, 1060, 1180, 1301
DdeI	CTNAG	6 cut(s)	214, 250, 393, 462, 1131, 1320
DpnI	GATC	8 cut(s)	165, 212, 228, 816, 857, 1159, 1178, 1192
DpnII	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
DraI	TTTAAA	2 cut(s)	108, 484
Eam1104I	CTCTTC	3 cut(s)	261, 588, 701
EarI	CTCTTC	3 cut(s)	261, 588, 701
Eco130I	CCWWGG	2 cut(s)	944, 1300
Eco31I	GGTCTC	1 cut(s)	1235
Eco47I	GGWCC	3 cut(s)	88, 713, 836
Eco57I	CTGAAG	3 cut(s)	242, 399, 1069
Eco88I	CYCGRG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	944, 1300
ErhI	CCWWGG	2 cut(s)	944, 1300
FaeI	CATG	6 cut(s)	448, 661, 1041, 1063, 1183, 1304
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 597, 629
FatI	CATG	6 cut(s)	444, 657, 1037, 1059, 1179, 1300
FauI	CCCGC	2 cut(s)	334, 643
FblI	GTMKAC	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	390, 585, 1077
FokI	GGATG	1 cut(s)	799
Fsp4HI	GCNGC	3 cut(s)	390, 585, 1077
FspBI	CTAG	3 cut(s)	60, 351, 539
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	390, 585, 1077
GsaI	CCCAGC	2 cut(s)	210, 1143
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	6 cut(s)	448, 661, 1041, 1063, 1183, 1304
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	557, 1102
HindII	GTYRAC	2 cut(s)	557, 1102
HindIII	AAGCTT	2 cut(s)	611, 1287
HinfI	GANTC	6 cut(s)	330, 891, 916, 964, 1133, 1310
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	4 cut(s)	442, 557, 829, 1102
Hpy188I	TCNGA	4 cut(s)	168, 313, 848, 1315
Hpy188III	TCNNGA	5 cut(s)	197, 493, 698, 980, 1180
Hpy8I	GTNNAC	4 cut(s)	442, 557, 829, 1102
HpyAV	CCTTC	2 cut(s)	1211, 1324
HpyCH4III	ACNGT	4 cut(s)	137, 520, 833, 1172
HpyCH4IV	ACGT	2 cut(s)	1268, 1348
HpyCH4V	TGCA	6 cut(s)	368, 406, 764, 863, 1076, 1155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 511, 1073, 1136
HpyF3I	CTNAG	6 cut(s)	214, 250, 393, 462, 1131, 1320
HpySE526I	ACGT	2 cut(s)	1268, 1348
Hsp92II	CATG	6 cut(s)	448, 661, 1041, 1063, 1183, 1304
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
LguI	GCTCTTC	1 cut(s)	261
Lsp1109I	GCAGC	2 cut(s)	596, 1088
LweI	GCATC	3 cut(s)	14, 1306, 1329
MaeI	CTAG	3 cut(s)	60, 351, 539
MaeII	ACGT	2 cut(s)	1268, 1348
MaeIII	GTNAC	7 cut(s)	55, 131, 523, 597, 628, 653, 1258
MalI	GATC	8 cut(s)	165, 212, 228, 816, 857, 1159, 1178, 1192
MboI	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
MboII	GAAGA	9 cut(s)	248, 605, 718, 803, 911, 932, 995, 1045, 1220
MflI	RGATCY	3 cut(s)	210, 1157, 1190
MlyI	GAGTC	4 cut(s)	900, 925, 1142, 1319
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	7 cut(s)	107, 122, 360, 483, 810, 1044, 1284
MspR9I	CCNGG	1 cut(s)	667
Mva1269I	GAATGC	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	4 cut(s)	347, 511, 1073, 1136
NcoI	CCATGG	1 cut(s)	1300
NdeII	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
NlaIII	CATG	6 cut(s)	448, 661, 1041, 1063, 1183, 1304
NlaIV	GGNNCC	2 cut(s)	714, 1192
NmuCI	GTSAC	2 cut(s)	523, 628
NspI	RCATGY	2 cut(s)	448, 1041
PagI	TCATGA	1 cut(s)	1179
PciI	ACATGT	2 cut(s)	444, 1037
PciSI	GCTCTTC	1 cut(s)	261
PctI	GAATGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	330, 964
PflMI	CCANNNNNTGG	1 cut(s)	1306
PkrI	GCNGC	3 cut(s)	391, 586, 1078
PleI	GAGTC	4 cut(s)	899, 924, 1141, 1318
PpsI	GAGTC	4 cut(s)	899, 924, 1141, 1318
PscI	ACATGT	2 cut(s)	444, 1037
PsiI	TTATAA	2 cut(s)	423, 1293
Psp1406I	AACGTT	1 cut(s)	1268
Psp6I	CCWGG	1 cut(s)	665
PspFI	CCCAGC	2 cut(s)	206, 1139
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	2 cut(s)	714, 1192
PspPI	GGNCC	3 cut(s)	88, 713, 836
PstNI	CAGNNNCTG	1 cut(s)	1319
PsuI	RGATCY	3 cut(s)	210, 1157, 1190
SalI	GTCGAC	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	7 cut(s)	107, 122, 360, 483, 810, 1044, 1284
SatI	GCNGC	3 cut(s)	390, 585, 1077
Sau3AI	GATC	8 cut(s)	163, 210, 226, 814, 855, 1157, 1176, 1190
Sau96I	GGNCC	3 cut(s)	88, 713, 836
SchI	GAGTC	4 cut(s)	900, 925, 1142, 1319
ScrFI	CCNGG	1 cut(s)	667
SfaNI	GCATC	3 cut(s)	14, 1306, 1329
SinI	GGWCC	3 cut(s)	88, 713, 836
SmlI	CTYRAG	1 cut(s)	978
SmoI	CTYRAG	1 cut(s)	978
SsiI	CCGC	3 cut(s)	341, 389, 650
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	3 cut(s)	60, 351, 539
StyD4I	CCNGG	1 cut(s)	665
StyI	CCWWGG	2 cut(s)	944, 1300
TaaI	ACNGT	4 cut(s)	137, 520, 833, 1172
TaiI	ACGT	2 cut(s)	1271, 1351
TaqI	TCGA	4 cut(s)	101, 381, 556, 967
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	330, 964
Tru1I	TTAA	7 cut(s)	107, 122, 360, 483, 810, 1044, 1284
Tru9I	TTAA	7 cut(s)	107, 122, 360, 483, 810, 1044, 1284
TscAI	CASTG	3 cut(s)	85, 838, 1175
TseFI	GTSAC	2 cut(s)	523, 628
TseI	GCWGC	2 cut(s)	584, 1076
Tsp45I	GTSAC	2 cut(s)	523, 628
TspDTI	ATGAA	3 cut(s)	719, 816, 1110
TspRI	CASTG	3 cut(s)	85, 838, 1175
Van91I	CCANNNNNTGG	1 cut(s)	1306
VpaK11BI	GGWCC	3 cut(s)	88, 713, 836
XapI	RAATTY	4 cut(s)	10, 766, 775, 907
XceI	RCATGY	2 cut(s)	448, 1041
XmiI	GTMKAC	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	3 cut(s)	60, 351, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.