Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

57668061 .. 57673198

Gene Structure 5138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG345000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGACAGTACACGTGGCCTCGCTTGGCTCACCAAATATACAGACCCTAATAATATTACTCTTTTTTTTTTTTTTTACCGCAGTTTACTTTTGTCCATGTGTAAAACCTTATCCCCCGCCCGAGTGTGAAGCCAAAACCCTTGGCAAAAACCCCCCAACAAAAGATGCCCACAGCGGTCGTCGCCGAGCAATGAAACGAATATGGAGGCTCTCCGACGCGGCCCAATCCGAGCTCTTCAGCCGCCACCGATGCTCCCCTAAACCCAAAACCCTAACCCCCTACACTTACACCCTCACCAACTCCGCCAATTTCAGATTCACTCGCGACGTCGTCAACAATGCCCAGAACCCTCCTCCTTCTTCTCCTCCACCCAACTCCTTCTCAAGCGTCATCGCTCTCTTCACCGACCAGCCCAGCCCACAAGAGACCAGGGCCCGGGAGGATCTGGCCCGCAAGATCAATCAGCTGAGGGCGGAGCTGGTTCAGAGCGCCGGCGATTCGGAGAAGATTGTTAGGGTTTTGGAGGAGAAGGGCTGTGAGTTTTTGTGGAGCAGTAATTTTAAGGATGTAATTCCTATTGTGGAGCTTATGCATCAGTTGCGTCATTGGCCTCATTTGGCCCTGGAGGTTTTTAATTGGAGAAGAAATCAGGCGGATGGTGGCACTCCTATGACGGCTGAGGAGTATACCAAGGCTATTACATTTGCAGGTAAAATTAAGAATGTTCAACTTGCCCTCGAGTTATTCGATGAAGCTGTAAACAAGCGGATCAAGACAACTTCTATGTATAATGCACTCATGAGTGCTTATGTGCTCAATGGCCATACTGCTAAATGTCAGTCTTTGTTTCGGGACCTCAAGAGGGAACAGTATATCAGACCTACCATTGTGACATACAACATTCTCATTTCCGTCTTTGGTCGATTGATGCTAGTTGATCATATGGAGGCAACTCTTCGGAGGTTAAAGGAATCAGATCTCTCCCCTAATTTAGGCACATACAATAATTTAATTGCTGGATACATTACTGCTTGGATGTGGGATAGAATGGAAAAAACTTTCGGAATGATGAAGGCAGGCCCTGTTAGTCCTGATATTAGCACCTACTTGCTAATGCTTCGAGGATATGCTCATTCAGGTAATCTGGTAAAGATGGAGGAGACGTATGAGTTGGTGAAACATCATGTAAACGACAAGGAAATCCCATTGATAAGGGCTATGATATGTGCATATTGCAGGAGTTCTGTCACAGACAGAGTGCAAAAAATACACACACTGATGAATCTTATTCCAGAAAATCAATACAGGCCTTGGTTGAATGTAATGCTGATTAGGGTTTATGCTCAAGAGGATTGTTTTGAGGCGATGGAGAGGTCAATAAATGAAGCATTTGAGCGCAAAACCTCCGTACATACTGCCGGTTTGATGCGATCTATAGTTGCAAGTTATTTCAGATGCAAAGAGGTGGACAGACTAGCACATTTTGTGAAGCGTGCAGAATGTGCTAGGTGGAGAATTTGCCGGTCCCTATATCACTGTAAGATGGTCATGTATGCATCAGAACAGCGCTTAGAAGAAATGGAGAATGTCCTTGGTGAGATGGCGTGTTTTAAGTTGGATCGCACGAAGAAAACATTTTGGATATTGTATCATGCCTACTATAGTTGTGGTCAAAGAAATAAGGTTGCACAAGTATTAGGATCAATGTGGAAGCATGGTTATGAAGTTCCATTGGAGGTATTGTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

583

Amino Acids

67.36

Weight (kDa)

9.23

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	248 - 307	2.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	260 - 306	8.6e-08	PPR repeat family
PPR_2	PF13041	329 - 378	1.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	2 cut(s)	218, 324
AclWI	GGATC	4 cut(s)	450, 776, 1626, 1708
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	1515
AcuI	CTGAAG	1 cut(s)	220
AcvI	CACGTG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	9, 1410
AfeI	AGCGCT	1 cut(s)	1568
AfiI	CCNNNNNNNGG	3 cut(s)	435, 862, 992
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	728, 1318
AjnI	CCWGG	2 cut(s)	428, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	5 cut(s)	232, 466, 478, 586, 755
AluI	AGCT	5 cut(s)	232, 466, 478, 586, 755
Alw21I	GWGCWC	2 cut(s)	234, 816
Alw26I	GTCTC	2 cut(s)	419, 1154
AlwI	GGATC	4 cut(s)	450, 776, 1626, 1708
AlwNI	CAGNNNCTG	1 cut(s)	1082
Ama87I	CYCGRG	3 cut(s)	119, 435, 737
Aor51HI	AGCGCT	1 cut(s)	1568
AoxI	GGCC	9 cut(s)	15, 219, 432, 447, 608, 618, 820, 1078, 1307
ApaI	GGGCCC	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	1515
AspLEI	GCGC	3 cut(s)	491, 1398, 1569
AspS9I	GGNCC	8 cut(s)	220, 432, 433, 448, 619, 853, 1079, 1524
AsuC2I	CCSGG	2 cut(s)	436, 437
AsuHPI	GGTGA	5 cut(s)	21, 286, 394, 1186, 1607
AvaI	CYCGRG	3 cut(s)	119, 435, 737
AvaII	GGWCC	2 cut(s)	853, 1524
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	822
BanII	GRGCYC	2 cut(s)	234, 436
BbrPI	CACGTG	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	234, 816
BbvCI	CCTCAGC	2 cut(s)	467, 678
BccI	CCATC	5 cut(s)	650, 1147, 1360, 1537, 1594
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	430, 623
BciVI	GTATCC	1 cut(s)	1013
BclI	TGATCA	1 cut(s)	937
BcnI	CCSGG	2 cut(s)	436, 437
BcoDI	GTCTC	2 cut(s)	419, 1154
BfaI	CTAG	3 cut(s)	932, 1475, 1506
BfmI	CTRYAG	2 cut(s)	1434, 1660
BfoI	RGCGCY	2 cut(s)	492, 1570
BfuAI	ACCTGC	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	1013
BglII	AGATCT	1 cut(s)	976
BisI	GCNGC	2 cut(s)	219, 241
BlsI	GCNGC	2 cut(s)	220, 242
Bme1390I	CCNGG	4 cut(s)	430, 436, 437, 623
Bme18I	GGWCC	2 cut(s)	853, 1524
BmeT110I	CYCGRG	3 cut(s)	119, 435, 737
BmgT120I	GGNCC	8 cut(s)	220, 432, 433, 448, 619, 853, 1079, 1524
BmiI	GGNNCC	3 cut(s)	434, 854, 1526
BmrFI	CCNGG	4 cut(s)	430, 436, 437, 623
BmsI	GCATC	7 cut(s)	154, 239, 601, 918, 1416, 1445, 1565
BpmI	CTGGAG	1 cut(s)	644
Bpu10I	CCTNAGC	2 cut(s)	467, 678
BpuEI	CTTGAG	3 cut(s)	367, 842, 1329
BpuMI	CCSGG	2 cut(s)	436, 437
BsaAI	YACGTR	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	7 cut(s)	139, 429, 435, 621, 690, 1310, 1591
BsaXI	ACNNNNNCTCC	5 cut(s)	236, 266, 1148, 1178, 1727
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 862, 992
Bse118I	RCCGGY	3 cut(s)	491, 1418, 1521
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	430, 623
BseDI	CCNNGG	7 cut(s)	139, 429, 435, 621, 690, 1310, 1591
BseGI	GGATG	3 cut(s)	571, 661, 1041
BseLI	CCNNNNNNNGG	3 cut(s)	435, 862, 992
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	458, 669
BseRI	GAGGAG	5 cut(s)	342, 354, 539, 695, 1172
BseSI	GKGCMC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	1515
Bsh1236I	CGCG	2 cut(s)	218, 324
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	9 cut(s)	17, 221, 434, 449, 610, 620, 822, 1080, 1309
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	234, 816
BsiHKCI	CYCGRG	3 cut(s)	119, 435, 737
BsiSI	CCGG	4 cut(s)	436, 492, 1419, 1522
BslFI	GGGAC	2 cut(s)	866, 1510
BslI	CCNNNNNNNGG	3 cut(s)	435, 862, 992
BsmAI	GTCTC	2 cut(s)	419, 1154
BsmBI	CGTCTC	1 cut(s)	1154
BsmFI	GGGAC	2 cut(s)	866, 1510
BsnI	GGCC	9 cut(s)	17, 221, 434, 449, 610, 620, 822, 1080, 1309
Bso31I	GGTCTC	1 cut(s)	419
BsoBI	CYCGRG	3 cut(s)	119, 435, 737
Bsp120I	GGGCCC	1 cut(s)	432
Bsp1286I	GDGCHC	3 cut(s)	234, 436, 816
Bsp143I	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
Bsp68I	TCGCGA	1 cut(s)	324
BspANI	GGCC	9 cut(s)	17, 221, 434, 449, 610, 620, 822, 1080, 1309
BspCNI	CTCAG	2 cut(s)	459, 670
BspFNI	CGCG	2 cut(s)	218, 324
BspHI	TCATGA	2 cut(s)	798, 1748
BspLI	GGNNCC	3 cut(s)	434, 854, 1526
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	4 cut(s)	450, 776, 1626, 1708
BspQI	GCTCTTC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	3 cut(s)	491, 1418, 1521
BssAI	RCCGGY	3 cut(s)	491, 1418, 1521
BssECI	CCNNGG	7 cut(s)	139, 429, 435, 621, 690, 1310, 1591
BssMI	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
BssNAI	GTATAC	1 cut(s)	687
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	4 cut(s)	139, 690, 1310, 1591
Bst1107I	GTATAC	1 cut(s)	687
Bst2UI	CCWGG	2 cut(s)	430, 623
Bst4CI	ACNGT	3 cut(s)	7, 870, 1538
Bst6I	CTCTTC	3 cut(s)	239, 404, 960
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	2 cut(s)	598, 1502
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	4 cut(s)	451, 493, 1078, 1494
BstDEI	CTNAG	3 cut(s)	467, 678, 1570
BstENI	CCTNNNNNAGG	1 cut(s)	990
BstF5I	GGATG	3 cut(s)	571, 661, 1041
BstFNI	CGCG	2 cut(s)	218, 324
BstH2I	RGCGCY	2 cut(s)	492, 1570
BstHHI	GCGC	3 cut(s)	491, 1398, 1569
BstKTI	GATC	8 cut(s)	445, 459, 771, 940, 979, 1433, 1621, 1703
BstMAI	GTCTC	2 cut(s)	419, 1154
BstMBI	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 249, 598, 607, 1502
BstNI	CCWGG	2 cut(s)	430, 623
BstSCI	CCNGG	4 cut(s)	428, 434, 435, 621
BstSFI	CTRYAG	2 cut(s)	1434, 1660
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	2 cut(s)	218, 324
BstX2I	RGATCY	2 cut(s)	442, 976
BstYI	RGATCY	2 cut(s)	442, 976
BstZ17I	GTATAC	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	1013
BsuRI	GGCC	9 cut(s)	17, 221, 434, 449, 610, 620, 822, 1080, 1309
BtgZI	GCGATG	2 cut(s)	376, 1379
BtsCI	GGATG	3 cut(s)	571, 661, 1041
BtsIMutI	CAGTG	2 cut(s)	1274, 1534
BtuMI	TCGCGA	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	4 cut(s)	451, 493, 1078, 1494
CaiI	CAGNNNCTG	1 cut(s)	1082
CciI	TCATGA	2 cut(s)	798, 1748
CfoI	GCGC	3 cut(s)	491, 1398, 1569
Cfr10I	RCCGGY	3 cut(s)	491, 1418, 1521
Cfr13I	GGNCC	8 cut(s)	220, 432, 433, 448, 619, 853, 1079, 1524
Cfr9I	CCCGGG	1 cut(s)	435
CseI	GACGC	3 cut(s)	224, 376, 590
Csp6I	GTAC	2 cut(s)	8, 1409
CviAII	CATG	7 cut(s)	96, 799, 1184, 1549, 1652, 1715, 1749
CviQI	GTAC	2 cut(s)	8, 1409
DdeI	CTNAG	3 cut(s)	467, 678, 1570
DpnI	GATC	8 cut(s)	444, 458, 770, 939, 978, 1432, 1620, 1702
DpnII	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	3 cut(s)	239, 404, 960
EarI	CTCTTC	3 cut(s)	239, 404, 960
EciI	GGCGGA	3 cut(s)	292, 488, 668
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	4 cut(s)	139, 690, 1310, 1591
Eco147I	AGGCCT	1 cut(s)	1309
Eco24I	GRGCYC	2 cut(s)	234, 436
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	853, 1524
Eco47III	AGCGCT	1 cut(s)	1568
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	13
Eco88I	CYCGRG	3 cut(s)	119, 435, 737
EcoICRI	GAGCTC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	990
EcoO109I	RGGNCCY	3 cut(s)	432, 853, 1079
EcoRII	CCWGG	2 cut(s)	428, 621
EcoT14I	CCWWGG	4 cut(s)	139, 690, 1310, 1591
EcoT22I	ATGCAT	2 cut(s)	594, 1558
EcoT38I	GRGCYC	2 cut(s)	234, 436
ErhI	CCWWGG	4 cut(s)	139, 690, 1310, 1591
Esp3I	CGTCTC	1 cut(s)	1154
FaeI	CATG	7 cut(s)	99, 802, 1187, 1552, 1655, 1718, 1752
FaqI	GGGAC	2 cut(s)	866, 1510
FatI	CATG	7 cut(s)	95, 798, 1183, 1548, 1651, 1714, 1748
FauI	CCCGC	2 cut(s)	123, 458
FauNDI	CATATG	1 cut(s)	942
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	2 cut(s)	219, 241
FokI	GGATG	3 cut(s)	578, 668, 1048
FriOI	GRGCYC	2 cut(s)	234, 436
Fsp4HI	GCNGC	2 cut(s)	219, 241
FspBI	CTAG	3 cut(s)	932, 1475, 1506
GlaI	GCGC	3 cut(s)	490, 1397, 1568
GluI	GCNGC	2 cut(s)	219, 241
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	644
HaeII	RGCGCY	2 cut(s)	492, 1570
HaeIII	GGCC	9 cut(s)	17, 221, 434, 449, 610, 620, 822, 1080, 1309
HapII	CCGG	4 cut(s)	436, 492, 1419, 1522
HgaI	GACGC	3 cut(s)	224, 376, 590
HhaI	GCGC	3 cut(s)	491, 1398, 1569
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	7 cut(s)	99, 802, 1187, 1552, 1655, 1718, 1752
Hin6I	GCGC	3 cut(s)	489, 1396, 1567
HinP1I	GCGC	3 cut(s)	489, 1396, 1567
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	315, 497, 971, 1282
HpaII	CCGG	4 cut(s)	436, 492, 1419, 1522
HphI	GGTGA	5 cut(s)	21, 286, 394, 1186, 1607
Hpy166II	GTNNAC	7 cut(s)	10, 85, 334, 687, 760, 1189, 1468
Hpy188III	TCNNGA	9 cut(s)	323, 772, 799, 851, 859, 1091, 1292, 1346, 1749
Hpy8I	GTNNAC	7 cut(s)	10, 85, 334, 687, 760, 1189, 1468
Hpy99I	CGWCG	4 cut(s)	183, 218, 329, 332
HpyAV	CCTTC	4 cut(s)	366, 388, 523, 1066
HpyCH4III	ACNGT	3 cut(s)	7, 870, 1538
HpyCH4IV	ACGT	3 cut(s)	12, 327, 1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 249, 598, 607, 1502
HpyF3I	CTNAG	3 cut(s)	467, 678, 1570
HpySE526I	ACGT	3 cut(s)	12, 327, 1163
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	7 cut(s)	99, 802, 1187, 1552, 1655, 1718, 1752
HspAI	GCGC	3 cut(s)	489, 1396, 1567
KroI	GCCGGC	1 cut(s)	491
KroNI	GCCGGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	4 cut(s)	257, 475, 549, 583
LweI	GCATC	7 cut(s)	154, 239, 601, 918, 1416, 1445, 1565
MaeI	CTAG	3 cut(s)	932, 1475, 1506
MaeII	ACGT	3 cut(s)	12, 327, 1163
MaeIII	GTNAC	2 cut(s)	889, 1246
MalI	GATC	8 cut(s)	444, 458, 770, 939, 978, 1432, 1620, 1702
MboI	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
MboII	GAAGA	8 cut(s)	226, 351, 391, 517, 654, 947, 1586, 1639
MflI	RGATCY	2 cut(s)	442, 976
MhlI	GDGCHC	3 cut(s)	234, 436, 816
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	9 cut(s)	307, 556, 570, 634, 714, 988, 1006, 1011, 1515
MluNI	TGGCCA	1 cut(s)	822
MmeI	TCCRAC	2 cut(s)	237, 1596
Mox20I	TGGCCA	1 cut(s)	822
Mph1103I	ATGCAT	2 cut(s)	594, 1558
MreI	CGCCGGCG	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	6 cut(s)	561, 633, 717, 965, 1010, 1611
MslI	CAYNNNNRTG	3 cut(s)	668, 1277, 1719
Msp20I	TGGCCA	1 cut(s)	822
MspA1I	CMGCKG	2 cut(s)	174, 466
MspI	CCGG	4 cut(s)	436, 492, 1419, 1522
MspR9I	CCNGG	4 cut(s)	430, 436, 437, 623
MvaI	CCWGG	2 cut(s)	430, 623
MvnI	CGCG	2 cut(s)	218, 324
MwoI	GCNNNNNNNGC	5 cut(s)	180, 249, 598, 607, 1502
NaeI	GCCGGC	1 cut(s)	493
NciI	CCSGG	2 cut(s)	436, 437
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
NgoMIV	GCCGGC	1 cut(s)	491
NlaIII	CATG	7 cut(s)	99, 802, 1187, 1552, 1655, 1718, 1752
NlaIV	GGNNCC	3 cut(s)	434, 854, 1526
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	889, 1246
NruI	TCGCGA	1 cut(s)	324
NsiI	ATGCAT	2 cut(s)	594, 1558
PaeR7I	CTCGAG	1 cut(s)	737
PagI	TCATGA	2 cut(s)	798, 1748
PceI	AGGCCT	1 cut(s)	1309
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PdiI	GCCGGC	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	315, 497, 971, 1282
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	220, 242
PmaCI	CACGTG	1 cut(s)	13
PmlI	CACGTG	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	853
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	2 cut(s)	428, 621
PspCI	CACGTG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	428, 621
PspN4I	GGNNCC	3 cut(s)	434, 854, 1526
PspOMI	GGGCCC	1 cut(s)	432
PspPI	GGNCC	8 cut(s)	220, 432, 433, 448, 619, 853, 1079, 1524
PspPPI	RGGWCCY	1 cut(s)	853
PspXI	VCTCGAGB	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	2 cut(s)	442, 976
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	466
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	2 cut(s)	9, 1410
RsaNI	GTAC	2 cut(s)	8, 1409
RseI	CAYNNNNRTG	3 cut(s)	668, 1277, 1719
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	6 cut(s)	561, 633, 717, 965, 1010, 1611
SatI	GCNGC	2 cut(s)	219, 241
Sau3AI	GATC	8 cut(s)	442, 456, 768, 937, 976, 1430, 1618, 1700
Sau96I	GGNCC	8 cut(s)	220, 432, 433, 448, 619, 853, 1079, 1524
ScrFI	CCNGG	4 cut(s)	430, 436, 437, 623
SduI	GDGCHC	3 cut(s)	234, 436, 816
SfaNI	GCATC	7 cut(s)	154, 239, 601, 918, 1416, 1445, 1565
SfcI	CTRYAG	2 cut(s)	1434, 1660
Sfr274I	CTCGAG	1 cut(s)	737
SgrAI	CRCCGGYG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	853, 1524
SlaI	CTCGAG	1 cut(s)	737
SmaI	CCCGGG	1 cut(s)	437
SmiMI	CAYNNNNRTG	3 cut(s)	668, 1277, 1719
SmlI	CTYRAG	4 cut(s)	382, 737, 857, 1344
SmoI	CTYRAG	4 cut(s)	382, 737, 857, 1344
Sse9I	AATT	9 cut(s)	307, 556, 570, 634, 714, 988, 1006, 1011, 1515
SseBI	AGGCCT	1 cut(s)	1309
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	932, 1475, 1506
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	1309
StyD4I	CCNGG	4 cut(s)	428, 434, 435, 621
StyI	CCWWGG	4 cut(s)	139, 690, 1310, 1591
TaaI	ACNGT	3 cut(s)	7, 870, 1538
TaiI	ACGT	3 cut(s)	15, 330, 1166
TaqI	TCGA	4 cut(s)	738, 747, 922, 1120
TasI	AATT	9 cut(s)	307, 556, 570, 634, 714, 988, 1006, 1011, 1515
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	2 cut(s)	221, 243
TfiI	GAWTC	4 cut(s)	315, 497, 971, 1282
Tru1I	TTAA	6 cut(s)	561, 633, 717, 965, 1010, 1611
Tru9I	TTAA	6 cut(s)	561, 633, 717, 965, 1010, 1611
TscAI	CASTG	2 cut(s)	1281, 1541
TseFI	GTSAC	2 cut(s)	889, 1246
Tsp45I	GTSAC	2 cut(s)	889, 1246
TspDTI	ATGAA	6 cut(s)	206, 765, 1085, 1295, 1398, 1737
TspGWI	ACGGA	2 cut(s)	901, 1396
TspMI	CCCGGG	1 cut(s)	435
TspRI	CASTG	2 cut(s)	1281, 1541
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	853, 1524
XagI	CCTNNNNNAGG	1 cut(s)	990
XapI	RAATTY	1 cut(s)	1515
XhoI	CTCGAG	1 cut(s)	737
XmaI	CCCGGG	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	3 cut(s)	932, 1475, 1506
ZraI	GACGTC	1 cut(s)	328
Zsp2I	ATGCAT	2 cut(s)	594, 1558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.