Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015871.1

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

1295 .. 1750

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015871.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaaacgaatatggaggctctccgacgcggcccaatccgagctcttcagccgccaccgatgctcccctaaacccaaaaccctaaccccctacacttacaccctcaccaactcggccaatttcagattcactcgcgacgtcgtcaacaatgcccagaacccttctccttcttctcctccacccaactccttctcaagcgtcatcgctctcttcaccgaccagcccagcccacaagagatgagggcccgggaggatctggccctcaaggtcaatcagctgagggcggagctggttcagagcgccggcgattccgagaagattgttagggttttggaggagaagggctgtgagtttttgtggagcagttattttaaggatgtaattcctatcgtggagcttatgcatcagttgcgtcattggcctcatttggccctggaggtattttccccaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

151

Amino Acids

17.33

Weight (kDa)

8.64

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccII	CGCG	2 cut(s)	29, 135
AciI	CCGC	3 cut(s)	29, 52, 284
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	43, 277, 289, 397
AluI	AGCT	4 cut(s)	43, 277, 289, 397
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	6 cut(s)	30, 114, 243, 258, 419, 429
ApaI	GGGCCC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	5 cut(s)	31, 243, 244, 259, 430
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	2 cut(s)	97, 205
AvaI	CYCGRG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	247
BanII	GRGCYC	2 cut(s)	45, 247
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	2 cut(s)	247, 248
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	2 cut(s)	30, 52
BlsI	GCNGC	2 cut(s)	31, 53
Bme1390I	CCNGG	3 cut(s)	247, 248, 434
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	5 cut(s)	31, 243, 244, 259, 430
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	3 cut(s)	247, 248, 434
BmsI	GCATC	2 cut(s)	50, 412
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	2 cut(s)	178, 248
BpuMI	CCSGG	2 cut(s)	247, 248
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	246, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse118I	RCCGGY	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	246, 432
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	165, 350
BseSI	GKGCMC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	2 cut(s)	29, 135
BshFI	GGCC	6 cut(s)	32, 116, 245, 260, 421, 431
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	247, 303
BsnI	GGCC	6 cut(s)	32, 116, 245, 260, 421, 431
BsoBI	CYCGRG	1 cut(s)	246
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	45, 247
Bsp143I	GATC	1 cut(s)	253
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	3 cut(s)	29, 52, 284
BspANI	GGCC	6 cut(s)	32, 116, 245, 260, 421, 431
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	29, 135
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	246, 432
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	50, 215
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	29, 135
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 409, 418
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	3 cut(s)	245, 246, 432
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	2 cut(s)	29, 135
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	6 cut(s)	32, 116, 245, 260, 421, 431
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	382
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	5 cut(s)	31, 243, 244, 259, 430
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	35, 187, 401
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	50, 215
EarI	CTCTTC	2 cut(s)	50, 215
EciI	GGCGGA	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	2 cut(s)	45, 247
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	405
EcoT38I	GRGCYC	2 cut(s)	45, 247
FaiI	YATR	2 cut(s)	13, 401
Fnu4HI	GCNGC	2 cut(s)	30, 52
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	2 cut(s)	45, 247
Fsp4HI	GCNGC	2 cut(s)	30, 52
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	30, 52
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	6 cut(s)	32, 116, 245, 260, 421, 431
HapII	CCGG	2 cut(s)	247, 303
HgaI	GACGC	3 cut(s)	35, 187, 401
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	126, 308
HpaII	CCGG	2 cut(s)	247, 303
HphI	GGTGA	2 cut(s)	97, 205
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	5 cut(s)	25, 40, 125, 297, 313
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	3 cut(s)	29, 140, 143
HpyAV	CCTTC	4 cut(s)	171, 177, 199, 334
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 409, 418
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	4 cut(s)	68, 286, 360, 394
LpnPI	CCDG	9 cut(s)	167, 233, 238, 242, 260, 275, 316, 419, 446
LweI	GCATC	2 cut(s)	50, 412
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	37, 162, 202, 328
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	45, 247
MluCI	AATT	3 cut(s)	118, 381, 450
MmeI	TCCRAC	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	405
MreI	CGCCGGCG	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	2 cut(s)	372, 454
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	247, 303
MspR9I	CCNGG	3 cut(s)	247, 248, 434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	29, 135
MwoI	GCNNNNNNNGC	3 cut(s)	60, 409, 418
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	1 cut(s)	253
NgoMIV	GCCGGC	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	92
NruI	TCGCGA	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	126, 308
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	31, 53
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	245
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	5 cut(s)	31, 243, 244, 259, 430
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	372, 454
SatI	GCNGC	2 cut(s)	30, 52
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	5 cut(s)	31, 243, 244, 259, 430
ScrFI	CCNGG	3 cut(s)	247, 248, 434
SduI	GDGCHC	2 cut(s)	45, 247
SetI	ASST	7 cut(s)	45, 141, 270, 279, 291, 399, 441
SfaNI	GCATC	2 cut(s)	50, 412
SgrAI	CRCCGGYG	1 cut(s)	302
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	193, 263
SmoI	CTYRAG	2 cut(s)	193, 263
Sse9I	AATT	3 cut(s)	118, 381, 450
SsiI	CCGC	3 cut(s)	29, 52, 284
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	245, 246, 432
TaiI	ACGT	1 cut(s)	141
TasI	AATT	3 cut(s)	118, 381, 450
TauI	GCSGC	2 cut(s)	32, 54
TfiI	GAWTC	2 cut(s)	126, 308
Tru1I	TTAA	2 cut(s)	372, 454
Tru9I	TTAA	2 cut(s)	372, 454
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.