Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

28685207 .. 28685587

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGAAGTCAATAAATGAGGCATTTGAGCACAAAACCGCTATACATACTGCAGGTGTGATGAGATGTATACTTTCAAGTTATTTCCGATGCAGTGAAGTGGATAGACTTGAAAGTTTTGGGAAGCATGCAGAATTTGCTAGGTGGAGAACTTGCAGATCCCTATATCATTGTAAGATGGCCATGTATGCATCACAAAAGCGCTTAAAGGAAATGGAGAGTGTGCTTATTCAGATGGAGAATTTTAAAATTGCATGTACCAAAAAAACATTTGTGATACTGTACAAAGCCTACTTAATGTGTGATCAAAGATATAAGGTGGCACAAGTATTAGGATTAATGTGGAAGCATGGATATGAAATTCCTTTGGATTCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

127

Amino Acids

14.89

Weight (kDa)

9.17

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	134, 241, 360
AfaI	GTAC	2 cut(s)	259, 284
AfeI	AGCGCT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	78, 113
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	153
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	1 cut(s)	180
ApoI	RAATTY	3 cut(s)	134, 241, 360
AseI	ATTAAT	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	2 cut(s)	172, 229
BclI	TGATCA	1 cut(s)	304
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	44
BmsI	GCATC	2 cut(s)	80, 200
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	158, 304
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	282
BssMI	GATC	2 cut(s)	158, 304
BssNAI	GTATAC	1 cut(s)	71
Bst1107I	GTATAC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	161, 307
BstMBI	GATC	2 cut(s)	158, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 188
BstNSI	RCATGY	2 cut(s)	131, 258
BstSFI	CTRYAG	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BstZ17I	GTATAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	258, 283
CviAII	CATG	4 cut(s)	128, 184, 255, 350
CviJI	RGCY	2 cut(s)	182, 290
CviKI_1	RGCY	2 cut(s)	182, 290
CviQI	GTAC	2 cut(s)	258, 283
DpnI	GATC	2 cut(s)	160, 306
DpnII	GATC	2 cut(s)	158, 304
DraI	TTTAAA	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	180
Eco47III	AGCGCT	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	4 cut(s)	131, 187, 258, 353
FatI	CATG	4 cut(s)	127, 183, 254, 349
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	131, 187, 258, 353
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	89, 234
Hpy8I	GTNNAC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4V	TGCA	6 cut(s)	53, 93, 131, 156, 191, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 188
Hsp92II	CATG	4 cut(s)	131, 187, 258, 353
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	158, 304
LpnPI	CCDG	1 cut(s)	39
LweI	GCATC	2 cut(s)	80, 200
MaeI	CTAG	1 cut(s)	141
MalI	GATC	2 cut(s)	160, 306
MboI	GATC	2 cut(s)	158, 304
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	134, 241, 249, 360
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	4 cut(s)	206, 246, 296, 338
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	137, 188
NdeII	GATC	2 cut(s)	158, 304
NlaIII	CATG	4 cut(s)	131, 187, 258, 353
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	131, 258
PaeI	GCATGC	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	2 cut(s)	259, 284
RsaNI	GTAC	2 cut(s)	258, 283
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	206, 246, 296, 338
Sau3AI	GATC	2 cut(s)	158, 304
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	3 cut(s)	58, 146, 321
SfaNI	GCATC	2 cut(s)	80, 200
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	354
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	134, 241, 249, 360
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	282
TasI	AATT	4 cut(s)	134, 241, 249, 360
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	206, 246, 296, 338
Tru9I	TTAA	4 cut(s)	206, 246, 296, 338
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	363, 372
TspRI	CASTG	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	338
XapI	RAATTY	3 cut(s)	134, 241, 360
XceI	RCATGY	2 cut(s)	131, 258
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.