Prupe.8G249700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
21532208 .. 21536280
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G249700.1

Sequence Viewer

Length: 1560 bp
ATGAAGCGAGTTTGGAAGCTATCAGACGCCGCCCAATCAGAGCTTCTCTGCCGCCACAGATGCTCTTCCAAAACCAAAACCTTACCTCCTTACAATCTCACCCTCACCAACTCCCCTAATTACAGATTCACCCGCGATGTCAATGCCCAGAACCATTCATCTTCCTCTCCATCTTCATCTTCCCCCACCTCCTTCCCAAGCATCATCGGTTTGTTCATCGACAAGCCCTCGCCCCAAGACCTGAGGGCCAGAGAGGATCTGGTGCACAAGGTCACGCAGTTGAGGGACGAACTGGTTCAAAATAGTGGGGACTCTGACGAGTTTGTTAGGGTTTTGGAAGAGAAGGGCTCTTCTTTCTTTTCGAGCTATGGGAATGGATACGCTGTCGTTGAGCTTATGAACCAGTTACGTTCGTGGCCCCATTTAGCCGTGGAGGTTTTTTATTGGAGAAGAAAGCAGGTGGCTGGTGGCACTCCTATGACGCCGGAGGAGTATGCCAAGGCTATTACATTGGCAGGTAAAACCAAGAATGTTGAACTTGCTGTTGAGTTATTTACCGAGGCTCTAAACAAGCGAATCAAGACGACTTCTATTTATAATGCACTGATGAGTGCTTATATGTTCAATGGTCTTGCTGCTAAATGTCAGTCTTTGTTTCGGGACCTCAAGAGGGAACCAGATTGCAGTCCCACTATTGTAACATACAATATTCTTATTTCCGTCTTTGGTCGGTTGATGCTGGTTGATCATATGGAGGCAACTCTCCAGGGCTTAAATGATTTAAATCTCTCGCCTAATTTAAGCACATACAACAATTTGATTGCTGGATATATTACAGCTTGGATGTGGGATAGTATGGAAGAAACTTTCCAAAATATGAAGGTGGGCCCTGTTAGTCCTGATACTAGCACCCACTTGCTAATGCTTCGAGGGTATGCTCATGCAGGTAATTTGGTAAAGATGGAGGAGACATATGAATTGGTAAAACATCACGTGAATGACAAGGAAATCCCATTGATAAGAGCTATGATATGTGCTTATTGCAAGAGTTCTGCCGCAGACAGAGTGAAAAAGATTCACTCGCTAATGAAACTTATTCCAGAAAATGAATACAGACCTTGGTTGAATGTGTTGCTGATTAGGGTTTATGCTCAAGAGGATTGGTTTGAGGCAATGGAGAAGTCAATAGATGAGGCATTTGAGCACAAAATCTCTGTAACTACTACAGGTGTGATGCGATCTATAATTTCAAGTTACTTCCGATGCAATGAAGTGGACAGACTTGAAAATTTTGTGAAGCGTGCGGCATGGGCAAGGTGGAGAACTTTCAGGTCCCTGTATCATTGTAAGATGGTCATGTATGCATCACAAAAGCGCTTAGAAGAAATGGAGAGTGTGCTTAATGAGATGGAGAATTTTAACCTGGGCTGTACCAAAAGAACATTTTGGATATTGTACAAAGCCTACTCAAGGTGTGGTCAAAGATATAAGGTTGCGAAAATAATAGGATTAATGTGGAAGCATGGATATGACGTTCCTTTGGATGAATTGCTGTCATGA

Protein Analysis

520

Amino Acids

59.76

Weight (kDa)

8.79

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 3 cut(s) 448, 506, 935
AccII CGCG 1 cut(s) 135
AciI CCGC 5 cut(s) 30, 52, 133, 1056, 1304
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 2 cut(s) 1288, 1414
AcvI CACGTG 1 cut(s) 994
AcyI GRCGYC 2 cut(s) 27, 482
AfaI GTAC 2 cut(s) 1432, 1457
AfeI AGCGCT 1 cut(s) 1376
AfiI CCNNNNNNNGG 2 cut(s) 670, 1470
AgsI TTSAA 6 cut(s) 299, 536, 625, 1126, 1251, 1286
AjnI CCWGG 2 cut(s) 765, 1422
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AloI GAACNNNNNNTCC 2 cut(s) 1518, 1550
AluBI AGCT 6 cut(s) 19, 43, 366, 394, 839, 1025
AluI AGCT 6 cut(s) 19, 43, 366, 394, 839, 1025
Alw21I GWGCWC 2 cut(s) 267, 1206
Alw26I GTCTC 1 cut(s) 962
Alw44I GTGCAC 1 cut(s) 263
AlwI GGATC 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 1376
AoxI GGCC 3 cut(s) 246, 416, 886
ApaI GGGCCC 1 cut(s) 890
ApaLI GTGCAC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 1288, 1414
AseI ATTAAT 1 cut(s) 1511
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 1377
AspS9I GGNCC 6 cut(s) 246, 417, 661, 886, 887, 1332
AsuHPI GGTGA 3 cut(s) 91, 97, 121
AvaII GGWCC 2 cut(s) 661, 1332
AxyI CCTNAGG 1 cut(s) 242
BaeGI GKGCMC 2 cut(s) 267, 890
BanII GRGCYC 2 cut(s) 350, 890
BbrPI CACGTG 1 cut(s) 994
Bbv12I GWGCWC 2 cut(s) 267, 1206
BbvI GCAGC 1 cut(s) 622
BccI CCATC 4 cut(s) 178, 955, 1345, 1402
BceAI ACGGC 1 cut(s) 413
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 2 cut(s) 767, 1424
BciVI GTATCC 1 cut(s) 371
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 1224
BfoI RGCGCY 1 cut(s) 1378
BfuAI ACCTGC 3 cut(s) 448, 506, 935
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 5 cut(s) 30, 52, 636, 1056, 1305
BlsI GCNGC 5 cut(s) 31, 53, 637, 1057, 1306
Bme1390I CCNGG 2 cut(s) 767, 1424
Bme18I GGWCC 2 cut(s) 661, 1332
BmgT120I GGNCC 6 cut(s) 246, 417, 661, 886, 887, 1332
BmiI GGNNCC 5 cut(s) 419, 662, 675, 888, 1334
BmrFI CCNGG 2 cut(s) 767, 1424
BmsI GCATC 6 cut(s) 50, 210, 726, 1224, 1253, 1373
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 749
BpuEI CTTGAG 3 cut(s) 650, 1137, 1453
BsaAI YACGTR 1 cut(s) 994
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 2 cut(s) 27, 482
BsaJI CCNNGG 6 cut(s) 429, 498, 558, 766, 1118, 1423
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 1470
Bse1I ACTGG 2 cut(s) 297, 403
Bse21I CCTNAGG 1 cut(s) 242
Bse3DI GCAATG 2 cut(s) 1179, 1273
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 2 cut(s) 767, 1424
BseDI CCNNGG 6 cut(s) 429, 498, 558, 766, 1118, 1423
BseGI GGATG 2 cut(s) 849, 1549
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 670, 1470
BseMI GCAATG 2 cut(s) 1179, 1273
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 2 cut(s) 297, 403
BseRI GAGGAG 2 cut(s) 503, 980
BseSI GKGCMC 2 cut(s) 267, 890
BseXI GCAGC 1 cut(s) 622
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 248, 418, 888
BsiHKAI GWGCWC 2 cut(s) 267, 1206
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 5 cut(s) 299, 323, 672, 674, 1318
BslI CCNNNNNNNGG 2 cut(s) 670, 1470
BsmAI GTCTC 1 cut(s) 962
BsmFI GGGAC 5 cut(s) 299, 323, 672, 674, 1318
BsnI GGCC 3 cut(s) 248, 418, 888
Bsp120I GGGCCC 1 cut(s) 886
Bsp1286I GDGCHC 4 cut(s) 267, 350, 890, 1206
Bsp1407I TGTACA 1 cut(s) 1455
Bsp143I GATC 3 cut(s) 256, 745, 1238
BspACI CCGC 5 cut(s) 30, 52, 133, 1056, 1304
BspANI GGCC 3 cut(s) 248, 418, 888
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 1556
BspLI GGNNCC 5 cut(s) 419, 662, 675, 888, 1334
BspMI ACCTGC 3 cut(s) 448, 506, 935
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 2 cut(s) 70, 355
BsrDI GCAATG 2 cut(s) 1179, 1273
BsrGI TGTACA 1 cut(s) 1455
BsrI ACTGG 2 cut(s) 297, 403
BssECI CCNNGG 6 cut(s) 429, 498, 558, 766, 1118, 1423
BssMI GATC 3 cut(s) 256, 745, 1238
BssNI GRCGYC 2 cut(s) 27, 482
BssT1I CCWWGG 2 cut(s) 498, 1118
Bst2UI CCWGG 2 cut(s) 767, 1424
Bst6I CTCTTC 3 cut(s) 70, 333, 355
BstACI GRCGYC 2 cut(s) 27, 482
BstAUI TGTACA 1 cut(s) 1455
BstBAI YACGTR 1 cut(s) 994
BstC8I GCNNGC 1 cut(s) 1302
BstDEI CTNAG 2 cut(s) 242, 1378
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 1468
BstF5I GGATG 2 cut(s) 849, 1549
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 1378
BstHHI GCGC 1 cut(s) 1377
BstKTI GATC 3 cut(s) 259, 748, 1241
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 3 cut(s) 256, 745, 1238
BstMWI GCNNNNNNNGC 2 cut(s) 60, 1310
BstNI CCWGG 2 cut(s) 767, 1424
BstSCI CCNGG 2 cut(s) 765, 1422
BstSFI CTRYAG 1 cut(s) 1224
BstSLI GKGCMC 2 cut(s) 267, 890
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 622
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu36I CCTNAGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 3 cut(s) 248, 418, 888
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 849, 1549
BtsIMutI CAGTG 1 cut(s) 602
BveI ACCTGC 3 cut(s) 448, 506, 935
Cac8I GCNNGC 1 cut(s) 1302
CciI TCATGA 1 cut(s) 1556
CfoI GCGC 1 cut(s) 1377
Cfr13I GGNCC 6 cut(s) 246, 417, 661, 886, 887, 1332
CseI GACGC 2 cut(s) 35, 490
Csp6I GTAC 2 cut(s) 1431, 1456
CviAII CATG 5 cut(s) 941, 1308, 1357, 1523, 1557
CviQI GTAC 2 cut(s) 1431, 1456
DdeI CTNAG 2 cut(s) 242, 1378
DpnI GATC 3 cut(s) 258, 747, 1240
DpnII GATC 3 cut(s) 256, 745, 1238
DraI TTTAAA 1 cut(s) 783
Eam1104I CTCTTC 3 cut(s) 70, 333, 355
EarI CTCTTC 3 cut(s) 70, 333, 355
Eco130I CCWWGG 2 cut(s) 498, 1118
Eco24I GRGCYC 2 cut(s) 350, 890
Eco47I GGWCC 2 cut(s) 661, 1332
Eco47III AGCGCT 1 cut(s) 1376
Eco72I CACGTG 1 cut(s) 994
Eco81I CCTNAGG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 1468
EcoO109I RGGNCCY 3 cut(s) 661, 887, 1332
EcoRII CCWGG 2 cut(s) 765, 1422
EcoT14I CCWWGG 2 cut(s) 498, 1118
EcoT22I ATGCAT 1 cut(s) 1366
EcoT38I GRGCYC 2 cut(s) 350, 890
ErhI CCWWGG 2 cut(s) 498, 1118
FaeI CATG 5 cut(s) 944, 1311, 1360, 1526, 1560
FaqI GGGAC 5 cut(s) 299, 323, 672, 674, 1318
FatI CATG 5 cut(s) 940, 1307, 1356, 1522, 1556
FauI CCCGC 1 cut(s) 140
FauNDI CATATG 2 cut(s) 750, 973
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 5 cut(s) 30, 52, 636, 1056, 1305
FokI GGATG 2 cut(s) 856, 1556
FriOI GRGCYC 2 cut(s) 350, 890
Fsp4HI GCNGC 5 cut(s) 30, 52, 636, 1056, 1305
FspBI CTAG 1 cut(s) 906
GlaI GCGC 1 cut(s) 1376
GluI GCNGC 5 cut(s) 30, 52, 636, 1056, 1305
GsuI CTGGAG 1 cut(s) 749
HaeII RGCGCY 1 cut(s) 1378
HaeIII GGCC 3 cut(s) 248, 418, 888
HapII CCGG 1 cut(s) 485
HgaI GACGC 2 cut(s) 35, 490
HhaI GCGC 1 cut(s) 1377
Hin1I GRCGYC 2 cut(s) 27, 482
Hin1II CATG 5 cut(s) 944, 1311, 1360, 1526, 1560
Hin6I GCGC 1 cut(s) 1375
HinP1I GCGC 1 cut(s) 1375
HinfI GANTC 4 cut(s) 126, 311, 576, 1075
HpaII CCGG 1 cut(s) 485
HphI GGTGA 3 cut(s) 91, 97, 121
Hpy166II GTNNAC 2 cut(s) 265, 1276
Hpy188I TCNGA 4 cut(s) 25, 40, 316, 1262
Hpy188III TCNNGA 7 cut(s) 580, 659, 667, 899, 1100, 1154, 1557
Hpy8I GTNNAC 2 cut(s) 265, 1276
HpyAV CCTTC 3 cut(s) 202, 337, 874
HpyCH4IV ACGT 3 cut(s) 409, 993, 1533
HpyCH4V TGCA 7 cut(s) 265, 602, 684, 944, 1044, 1266, 1364
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 1310
HpyF3I CTNAG 2 cut(s) 242, 1378
HpySE526I ACGT 3 cut(s) 409, 993, 1533
Hsp92I GRCGYC 2 cut(s) 27, 482
Hsp92II CATG 5 cut(s) 944, 1311, 1360, 1526, 1560
HspAI GCGC 1 cut(s) 1375
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 3 cut(s) 256, 745, 1238
LguI GCTCTTC 2 cut(s) 70, 355
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 6 cut(s) 50, 210, 726, 1224, 1253, 1373
MaeI CTAG 1 cut(s) 906
MaeII ACGT 3 cut(s) 409, 993, 1533
MaeIII GTNAC 5 cut(s) 271, 405, 697, 1216, 1253
MalI GATC 3 cut(s) 258, 747, 1240
MboI GATC 3 cut(s) 256, 745, 1238
MboII GAAGA 9 cut(s) 57, 153, 165, 171, 342, 350, 462, 872, 1394
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 4 cut(s) 267, 350, 890, 1206
MluCI AATT 9 cut(s) 118, 796, 814, 949, 977, 1245, 1288, 1414, 1547
MlyI GAGTC 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 1366
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 6 cut(s) 773, 782, 800, 1401, 1419, 1511
MslI CAYNNNNRTG 3 cut(s) 476, 996, 1527
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 767, 1424
MvaI CCWGG 2 cut(s) 767, 1424
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 60, 1310
NdeI CATATG 2 cut(s) 750, 973
NdeII GATC 3 cut(s) 256, 745, 1238
NlaIII CATG 5 cut(s) 944, 1311, 1360, 1526, 1560
NlaIV GGNNCC 5 cut(s) 419, 662, 675, 888, 1334
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 1366
PagI TCATGA 1 cut(s) 1556
PaqCI CACCTGC 1 cut(s) 448
PciSI GCTCTTC 2 cut(s) 70, 355
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 3 cut(s) 126, 576, 1075
PkrI GCNGC 5 cut(s) 31, 53, 637, 1057, 1306
PleI GAGTC 1 cut(s) 305
PmaCI CACGTG 1 cut(s) 994
PmlI CACGTG 1 cut(s) 994
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 994
PpuMI RGGWCCY 2 cut(s) 661, 1332
PshBI ATTAAT 1 cut(s) 1511
PsiI TTATAA 1 cut(s) 597
Psp5II RGGWCCY 2 cut(s) 661, 1332
Psp6I CCWGG 2 cut(s) 765, 1422
PspCI CACGTG 1 cut(s) 994
PspGI CCWGG 2 cut(s) 765, 1422
PspN4I GGNNCC 5 cut(s) 419, 662, 675, 888, 1334
PspOMI GGGCCC 1 cut(s) 886
PspPI GGNCC 6 cut(s) 246, 417, 661, 886, 887, 1332
PspPPI RGGWCCY 2 cut(s) 661, 1332
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 1432, 1457
RsaNI GTAC 2 cut(s) 1431, 1456
RseI CAYNNNNRTG 3 cut(s) 476, 996, 1527
SapI GCTCTTC 2 cut(s) 70, 355
SaqAI TTAA 6 cut(s) 773, 782, 800, 1401, 1419, 1511
SatI GCNGC 5 cut(s) 30, 52, 636, 1056, 1305
Sau3AI GATC 3 cut(s) 256, 745, 1238
Sau96I GGNCC 6 cut(s) 246, 417, 661, 886, 887, 1332
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 767, 1424
SduI GDGCHC 4 cut(s) 267, 350, 890, 1206
SfaNI GCATC 6 cut(s) 50, 210, 726, 1224, 1253, 1373
SfcI CTRYAG 1 cut(s) 1224
SinI GGWCC 2 cut(s) 661, 1332
SmiI ATTTAAAT 1 cut(s) 783
SmiMI CAYNNNNRTG 3 cut(s) 476, 996, 1527
SmlI CTYRAG 3 cut(s) 665, 1152, 1468
SmoI CTYRAG 3 cut(s) 665, 1152, 1468
Sse9I AATT 9 cut(s) 118, 796, 814, 949, 977, 1245, 1288, 1414, 1547
SsiI CCGC 5 cut(s) 30, 52, 133, 1056, 1304
SspI AATATT 1 cut(s) 709
SspMI CTAG 1 cut(s) 906
StyD4I CCNGG 2 cut(s) 765, 1422
StyI CCWWGG 2 cut(s) 498, 1118
SwaI ATTTAAAT 1 cut(s) 783
TaiI ACGT 3 cut(s) 412, 996, 1536
TaqI TCGA 3 cut(s) 219, 362, 928
TasI AATT 9 cut(s) 118, 796, 814, 949, 977, 1245, 1288, 1414, 1547
TatI WGTACW 1 cut(s) 1455
TauI GCSGC 4 cut(s) 32, 54, 1058, 1307
TfiI GAWTC 3 cut(s) 126, 576, 1075
Tru1I TTAA 6 cut(s) 773, 782, 800, 1401, 1419, 1511
Tru9I TTAA 6 cut(s) 773, 782, 800, 1401, 1419, 1511
TscAI CASTG 1 cut(s) 609
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 1 cut(s) 609
VneI GTGCAC 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 661, 1332
VspI ATTAAT 1 cut(s) 1511
XagI CCTNNNNNAGG 1 cut(s) 1468
XapI RAATTY 2 cut(s) 1288, 1414
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 906
Zsp2I ATGCAT 1 cut(s) 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.