Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

41364872 .. 41366554

Gene Structure 1683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1295800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTCAGACCCATTCCTCCTCCGCTCATCTCCTTCTCAAGCATCATCGGCTTGTTCAGCGACAAGCCCTCGACGCAAGATCTCAGGGCCAGGGAGGATCTGGCCCGCACGGTGTCCAGGGTGAGGGACGAACTGGTTCAGAATGTTGGGGATTCTGAGAAGATTGTTAGAATTTTGGAAGCGAAGGTATGTTCCTCCCTCCGTAAATGGAAAAGCGGAGAGGGTGTCGTTGAGCTTCTGAATCAGCTGCGTTCGTGGCCTCATTTGGCCCTGGAGGTTTTTGATTGGAGAAGACGGCAGGTTTCTAGTAGGACTTCAATCAGCGCAGAGGAATATGCAGAGGCTATTATAATAGCAGGTAAAGCTAAGAATGTTGAACTTTCCGTTGAGTTATTTACCGAGGCTATAAACAAGAGGATGAAGACGACTTCTATTTATAATGCACTGATGAGTGCTTATATGTTCAATGGTCATACTGCTAAATGTCAGTCTTTGTTTCGGGACCTCAAGAAGGAACCAGATTGCCGTCCTACTGTTGTAACGTACAACATTCTTATTTCTGTATTTGGTCGTTTGATGCTGGTTGACCATATGGAGGCAACTGTCCTGGGTTTAAAGGATTTAGGCCTCTTGCCTAATTTAAGCACATACAATCGTTTGATTGCTGGATATATAACGGCTTGGATGTGGAATGGTATGGAACAAACTTTCGAAAAGATGAAGGAGGGTCCTGTTAGTCCCTATATTAGCACTCACTTGCTAATGCTTCGAGGGTATGCTCATTCAGGTTATTTGGTAAAGATGGAGGAAACGTATGAGTTGCTAAAACATCACATAGATAGCAAGGAAATCCCATTGATAAGAGCTATGATTTGTGCATATTGCAAGAGTTCTGTGACAGACAGTGGAAAAGATTCACAAACTAATGAAACTTATTCCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

316

Amino Acids

35.85

Weight (kDa)

8.94

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 189	2.5e-10	PPR repeat family
PPR_3	PF13812	146 - 190	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	212 - 261	1.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	350, 438
Acc36I	ACCTGC	2 cut(s)	289, 347
AccBSI	CCGCTC	1 cut(s)	25
AciI	CCGC	3 cut(s)	23, 106, 216
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	3 cut(s)	123, 511, 595
AgsI	TTSAA	3 cut(s)	318, 377, 466
AjnI	CCWGG	4 cut(s)	89, 116, 270, 606
AluBI	AGCT	4 cut(s)	235, 247, 365, 866
AluI	AGCT	4 cut(s)	235, 247, 365, 866
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	5 cut(s)	87, 102, 257, 267, 625
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	171
Asp700I	GAANNNNTTC	2 cut(s)	135, 913
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	5 cut(s)	87, 103, 268, 502, 728
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	711
AvaII	GGWCC	2 cut(s)	502, 728
BbsI	GAAGAC	2 cut(s)	298, 428
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	796
BceAI	ACGGC	3 cut(s)	311, 510, 693
BciT130I	CCWGG	4 cut(s)	91, 118, 272, 608
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	2 cut(s)	289, 347
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	4 cut(s)	91, 118, 272, 608
Bme18I	GGWCC	2 cut(s)	502, 728
BmgT120I	GGNCC	5 cut(s)	87, 103, 268, 502, 728
BmiI	GGNNCC	3 cut(s)	503, 516, 729
BmrFI	CCNGG	4 cut(s)	91, 118, 272, 608
BmsI	GCATC	2 cut(s)	51, 567
BpiI	GAAGAC	2 cut(s)	298, 428
BpmI	CTGGAG	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	22, 491
BsaJI	CCNNGG	5 cut(s)	90, 117, 270, 399, 607
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 797, 827
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 511, 595
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	4 cut(s)	91, 118, 272, 608
BseDI	CCNNGG	5 cut(s)	90, 117, 270, 399, 607
BseGI	GGATG	2 cut(s)	423, 690
BseLI	CCNNNNNNNGG	3 cut(s)	123, 511, 595
BseMII	CTCAG	3 cut(s)	19, 97, 147
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	5 cut(s)	89, 104, 259, 269, 627
BslFI	GGGAC	3 cut(s)	140, 515, 723
BslI	CCNNNNNNNGG	3 cut(s)	123, 511, 595
BsmFI	GGGAC	3 cut(s)	140, 515, 723
BsnI	GGCC	5 cut(s)	89, 104, 259, 269, 627
Bsp119I	TTCGAA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	79, 97
BspACI	CCGC	3 cut(s)	23, 106, 216
BspANI	GGCC	5 cut(s)	89, 104, 259, 269, 627
BspCNI	CTCAG	3 cut(s)	18, 96, 148
BspLI	GGNNCC	3 cut(s)	503, 516, 729
BspMI	ACCTGC	2 cut(s)	289, 347
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	5 cut(s)	90, 117, 270, 399, 607
BssMI	GATC	2 cut(s)	79, 97
Bst2UI	CCWGG	4 cut(s)	91, 118, 272, 608
Bst4CI	ACNGT	4 cut(s)	112, 535, 604, 905
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	4 cut(s)	5, 83, 156, 366
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	423, 690
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	82, 100
BstMBI	GATC	2 cut(s)	79, 97
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 57, 73, 256, 362
BstNI	CCWGG	4 cut(s)	91, 118, 272, 608
BstSCI	CCNGG	4 cut(s)	89, 116, 270, 606
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	2 cut(s)	298, 428
BstX2I	RGATCY	2 cut(s)	79, 97
BstYI	RGATCY	2 cut(s)	79, 97
BsuRI	GGCC	5 cut(s)	89, 104, 259, 269, 627
BtsCI	GGATG	2 cut(s)	423, 690
BtsIMutI	CAGTG	2 cut(s)	443, 910
BveI	ACCTGC	2 cut(s)	289, 347
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	5 cut(s)	87, 103, 268, 502, 728
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	544
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	4 cut(s)	5, 83, 156, 366
DpnI	GATC	2 cut(s)	81, 99
DpnII	GATC	2 cut(s)	79, 97
DraI	TTTAAA	1 cut(s)	615
Eco147I	AGGCCT	1 cut(s)	627
Eco47I	GGWCC	2 cut(s)	502, 728
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	2 cut(s)	502, 728
EcoRII	CCWGG	4 cut(s)	89, 116, 270, 606
FaqI	GGGAC	3 cut(s)	140, 515, 723
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	2 cut(s)	430, 697
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	5 cut(s)	89, 104, 259, 269, 627
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	3 cut(s)	152, 241, 914
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	4 cut(s)	8, 141, 157, 240
Hpy188III	TCNNGA	3 cut(s)	500, 508, 939
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	43, 178, 505, 715
HpyCH4III	ACNGT	4 cut(s)	112, 535, 604, 905
HpyCH4IV	ACGT	2 cut(s)	542, 812
HpyCH4V	TGCA	4 cut(s)	338, 443, 878, 885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 57, 73, 256, 362
HpyF3I	CTNAG	4 cut(s)	5, 83, 156, 366
HpySE526I	ACGT	2 cut(s)	542, 812
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	79, 97
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	2 cut(s)	51, 567
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	542, 812
MaeIII	GTNAC	2 cut(s)	538, 895
MalI	GATC	2 cut(s)	81, 99
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	2 cut(s)	79, 97
MboII	GAAGA	3 cut(s)	172, 303, 433
MflI	RGATCY	2 cut(s)	79, 97
MluCI	AATT	2 cut(s)	171, 637
MroXI	GAANNNNTTC	2 cut(s)	135, 913
MseI	TTAA	2 cut(s)	614, 641
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	4 cut(s)	91, 118, 272, 608
MvaI	CCWGG	4 cut(s)	91, 118, 272, 608
MwoI	GCNNNNNNNGC	5 cut(s)	48, 57, 73, 256, 362
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	2 cut(s)	79, 97
NlaIV	GGNNCC	3 cut(s)	503, 516, 729
NmuCI	GTSAC	1 cut(s)	895
NspV	TTCGAA	1 cut(s)	711
PceI	AGGCCT	1 cut(s)	627
PdmI	GAANNNNTTC	2 cut(s)	135, 913
PfeI	GAWTC	3 cut(s)	152, 241, 914
PkrI	GCNGC	1 cut(s)	249
PpuMI	RGGWCCY	2 cut(s)	502, 728
PsiI	TTATAA	2 cut(s)	350, 438
Psp5II	RGGWCCY	2 cut(s)	502, 728
Psp6I	CCWGG	4 cut(s)	89, 116, 270, 606
PspGI	CCWGG	4 cut(s)	89, 116, 270, 606
PspN4I	GGNNCC	3 cut(s)	503, 516, 729
PspPI	GGNCC	5 cut(s)	87, 103, 268, 502, 728
PspPPI	RGGWCCY	2 cut(s)	502, 728
PsuI	RGATCY	2 cut(s)	79, 97
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	614, 641
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	79, 97
Sau96I	GGNCC	5 cut(s)	87, 103, 268, 502, 728
ScrFI	CCNGG	4 cut(s)	91, 118, 272, 608
SfaNI	GCATC	2 cut(s)	51, 567
SfuI	TTCGAA	1 cut(s)	711
SinI	GGWCC	2 cut(s)	502, 728
SmlI	CTYRAG	2 cut(s)	37, 506
SmoI	CTYRAG	2 cut(s)	37, 506
Sse9I	AATT	2 cut(s)	171, 637
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	3 cut(s)	23, 106, 216
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	4 cut(s)	89, 116, 270, 606
TaaI	ACNGT	4 cut(s)	112, 535, 604, 905
TaiI	ACGT	2 cut(s)	545, 815
TaqI	TCGA	3 cut(s)	71, 711, 769
TasI	AATT	2 cut(s)	171, 637
TfiI	GAWTC	3 cut(s)	152, 241, 914
Tru1I	TTAA	2 cut(s)	614, 641
Tru9I	TTAA	2 cut(s)	614, 641
TscAI	CASTG	2 cut(s)	450, 910
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	3 cut(s)	434, 734, 942
TspGWI	ACGGA	2 cut(s)	191, 373
TspRI	CASTG	2 cut(s)	450, 910
VpaK11BI	GGWCC	2 cut(s)	502, 728
XagI	CCTNNNNNAGG	1 cut(s)	509
XapI	RAATTY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmnI	GAANNNNTTC	2 cut(s)	135, 913
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.