Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

35946817 .. 35948330

Gene Structure 1514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAATCCAGGTTGGGCAGGACTACCAAAGGACTTGTTGGGTTTAGTTTTAGAAGGATTAGTATCATCATCAGATTATCTGCGATTCAGCGTTGTTTGTAAGTCATGGTTTTCTGTGGCAAAGGATAATCAGAGGCAACGCATATCAAGATTTCAGCAACCTCCGATGCTCCTGATTTCTAGTGCAGATGAAGAAAATTCATGGAATTTATACAATGTTGTGGATGATAAGGTTCTGGACATGCAACTAAGAGTGCCGAATAGACGATTTTGTGGCTCTTCAAAAGGATGGTTGATATTTGTGGATGAAAGTTTTGCAGTAACCCTACTAAATCCATTCTGCTCCAATGTTAGAGGAAAGAAAAAGAAGACAAATGTGACAATCATTCGTCTTCCACCATTGCATGGTAAGAAGGTATGGATTAAAAGATGCGACTACTATGTCTTCAAGGCTATATTGTCAGCAGACCCAATACTAGATCCAAAAGATTGCATTCTTACGGTAATTAATGCTGAATATGGTCGACTGGCTTTTATCAGACCCAGTAGTAGAGACAAACGCTGGACTTATGTTGATAGGAAATGGGGCTTAATTGAAGAAGTGGTATATTCTGAAGGTAAAATTTATGCAGTTGATAACAACAGCCAACTTTTTTCTTTTGATATTAATAGCTTGTCGAAGTTGGAACTTGGGCAAGGTCTTTCTTCGGATGGCTTTAGCAAGAGATATCTTGTATTCAATTCAAATAAGAAACAGTTCTGGATGGTTCAAAGGTATATTCACTACCAAAAAGACAAACGTGAGACCACAAAATTCAAAGTTTTCAAGATGAACTTCGATGAGCACGAGTGGATAGAAATAGAAACCCTAGATGATGTTGCCGTCTTTGTGGGTGATAACTCCTCAGTGTCTGTGGCAGCTTCAGATTTTCCGGGTTGCCGGTCTAATTGTATATACTTTAGCCATGATGAGGATACATGTGGCACACTTGAGCCTTATGGACCTAATGATTGCGGAGTATATGAAATAACGAGTCATCGTTTCTTACAGCCTTATCTAGATGACTCTAAGAAGCTGTTGAAGTTAACAAGGCAACCTCCAATCTGGTTTGTGCCATCCTTTCAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

376

Amino Acids

43.49

Weight (kDa)

8.57

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	70 - 341	2e-53	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	1 cut(s)	1014
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	4 cut(s)	196, 205, 621, 812
AcuI	CTGAAG	2 cut(s)	633, 906
AfiI	CCNNNNNNNGG	2 cut(s)	404, 970
AflIII	ACRYGT	1 cut(s)	977
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	3 cut(s)	672, 920, 1075
AluI	AGCT	3 cut(s)	672, 920, 1075
Alw21I	GWGCWC	1 cut(s)	846
Alw26I	GTCTC	2 cut(s)	546, 797
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	911
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	4 cut(s)	196, 205, 621, 812
AseI	ATTAAT	2 cut(s)	507, 666
Asp700I	GAANNNNTTC	1 cut(s)	755
AspS9I	GGNCC	1 cut(s)	1001
AsuC2I	CCSGG	1 cut(s)	933
AsuHPI	GGTGA	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	1001
BauI	CACGAG	1 cut(s)	845
BbsI	GAAGAC	3 cut(s)	374, 383, 436
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	1 cut(s)	929
BccI	CCATC	4 cut(s)	282, 704, 757, 1123
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	967
BcnI	CCSGG	1 cut(s)	933
BcoDI	GTCTC	2 cut(s)	546, 797
BfaI	CTAG	4 cut(s)	180, 476, 869, 1058
BfuI	GTATCC	1 cut(s)	967
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	2 cut(s)	9, 933
Bme18I	GGWCC	1 cut(s)	1001
BmgT120I	GGNCC	1 cut(s)	1001
BmrFI	CCNGG	2 cut(s)	9, 933
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	156, 419
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	3 cut(s)	374, 383, 436
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	1 cut(s)	933
BsaBI	GATNNNNATC	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 970
Bse118I	RCCGGY	1 cut(s)	939
Bse1I	ACTGG	2 cut(s)	531, 543
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	6 cut(s)	229, 293, 310, 715, 768, 1115
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	404, 970
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	2 cut(s)	531, 543
BseRI	GAGGAG	1 cut(s)	892
BseXI	GCAGC	1 cut(s)	929
BsgI	GTGCAG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	932, 940
BslI	CCNNNNNNNGG	2 cut(s)	404, 970
BsmAI	GTCTC	2 cut(s)	546, 797
BsmI	GAATGC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	1 cut(s)	1014
BspCNI	CTCAG	1 cut(s)	917
BspPI	GGATC	1 cut(s)	473
BspQI	GCTCTTC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	939
BsrI	ACTGG	2 cut(s)	531, 543
BssAI	RCCGGY	1 cut(s)	939
BssMI	GATC	1 cut(s)	478
BssSI	CACGAG	1 cut(s)	845
Bst2BI	CACGAG	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	3 cut(s)	502, 756, 1128
Bst6I	CTCTTC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	248, 904, 1068
BstF5I	GGATG	6 cut(s)	229, 293, 310, 715, 768, 1115
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	546, 797
BstMBI	GATC	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	2 cut(s)	244, 981
BstSCI	CCNGG	2 cut(s)	7, 931
BstV1I	GCAGC	1 cut(s)	929
BstV2I	GAAGAC	3 cut(s)	374, 383, 436
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	967
BtsCI	GGATG	6 cut(s)	229, 293, 310, 715, 768, 1115
BtsIMutI	CAGTG	1 cut(s)	912
CaiI	CAGNNNCTG	1 cut(s)	911
Cfr10I	RCCGGY	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	1001
CviAII	CATG	6 cut(s)	105, 201, 241, 404, 965, 978
DdeI	CTNAG	3 cut(s)	248, 904, 1068
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	797
Eco32I	GATATC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	1001
Eco57I	CTGAAG	2 cut(s)	633, 906
EcoRII	CCWGG	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	728
FaeI	CATG	6 cut(s)	108, 204, 244, 407, 968, 981
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FatI	CATG	6 cut(s)	104, 200, 240, 403, 964, 977
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	6 cut(s)	236, 300, 317, 722, 775, 1102
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	4 cut(s)	180, 476, 869, 1058
GluI	GCNGC	1 cut(s)	918
HapII	CCGG	2 cut(s)	932, 940
Hin1II	CATG	6 cut(s)	108, 204, 244, 407, 968, 981
HincII	GTYRAC	2 cut(s)	524, 1086
HindII	GTYRAC	2 cut(s)	524, 1086
HinfI	GANTC	4 cut(s)	4, 84, 1033, 1064
HpaI	GTTAAC	1 cut(s)	1086
HpaII	CCGG	2 cut(s)	932, 940
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	2 cut(s)	524, 1086
Hpy188I	TCNGA	7 cut(s)	73, 132, 165, 539, 613, 709, 925
Hpy188III	TCNNGA	6 cut(s)	147, 172, 236, 760, 826, 1058
Hpy8I	GTNNAC	2 cut(s)	524, 1086
HpyAV	CCTTC	3 cut(s)	47, 406, 608
HpyCH4III	ACNGT	3 cut(s)	502, 756, 1128
HpyCH4IV	ACGT	1 cut(s)	799
HpyCH4V	TGCA	6 cut(s)	185, 244, 317, 403, 492, 629
HpyF3I	CTNAG	3 cut(s)	248, 904, 1068
HpySE526I	ACGT	1 cut(s)	799
Hsp92II	CATG	6 cut(s)	108, 204, 244, 407, 968, 981
KspAI	GTTAAC	1 cut(s)	1086
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	174, 347
Lsp1109I	GCAGC	1 cut(s)	929
LweI	GCATC	2 cut(s)	156, 419
MaeI	CTAG	4 cut(s)	180, 476, 869, 1058
MaeII	ACGT	1 cut(s)	799
MaeIII	GTNAC	2 cut(s)	319, 376
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	7 cut(s)	203, 270, 379, 383, 436, 608, 696
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	8 cut(s)	196, 205, 504, 591, 621, 739, 812, 946
MlyI	GAGTC	2 cut(s)	1042, 1058
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	6 cut(s)	126, 171, 347, 913, 964, 1107
MroXI	GAANNNNTTC	1 cut(s)	755
MseI	TTAA	5 cut(s)	423, 507, 590, 666, 1085
MspI	CCGG	2 cut(s)	932, 940
MspR9I	CCNGG	2 cut(s)	9, 933
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	9
NciI	CCSGG	1 cut(s)	933
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	6 cut(s)	108, 204, 244, 407, 968, 981
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	2 cut(s)	244, 981
PciI	ACATGT	1 cut(s)	977
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	755
PfeI	GAWTC	2 cut(s)	4, 84
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	2 cut(s)	1041, 1058
PpsI	GAGTC	2 cut(s)	1041, 1058
PscI	ACATGT	1 cut(s)	977
PshBI	ATTAAT	2 cut(s)	507, 666
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	1001
PstNI	CAGNNNCTG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	478
SalI	GTCGAC	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	5 cut(s)	423, 507, 590, 666, 1085
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	1 cut(s)	1001
SchI	GAGTC	2 cut(s)	1042, 1058
ScrFI	CCNGG	2 cut(s)	9, 933
SduI	GDGCHC	1 cut(s)	846
SfaNI	GCATC	2 cut(s)	156, 419
SinI	GGWCC	1 cut(s)	1001
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	8 cut(s)	196, 205, 504, 591, 621, 739, 812, 946
SsiI	CCGC	1 cut(s)	1014
SspMI	CTAG	4 cut(s)	180, 476, 869, 1058
StyD4I	CCNGG	2 cut(s)	7, 931
TaaI	ACNGT	3 cut(s)	502, 756, 1128
TaiI	ACGT	1 cut(s)	802
TaqI	TCGA	3 cut(s)	523, 677, 837
TasI	AATT	8 cut(s)	196, 205, 504, 591, 621, 739, 812, 946
TfiI	GAWTC	2 cut(s)	4, 84
Tru1I	TTAA	5 cut(s)	423, 507, 590, 666, 1085
Tru9I	TTAA	5 cut(s)	423, 507, 590, 666, 1085
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	6 cut(s)	17, 189, 204, 321, 845, 1038
TspRI	CASTG	1 cut(s)	912
Van91I	CCANNNNNTGG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	1001
VspI	ATTAAT	2 cut(s)	507, 666
XapI	RAATTY	4 cut(s)	196, 205, 621, 812
XbaI	TCTAGA	1 cut(s)	1057
XceI	RCATGY	2 cut(s)	244, 981
XmiI	GTMKAC	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	755
XspI	CTAG	4 cut(s)	180, 476, 869, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.