Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

55153101 .. 55156960

Gene Structure 3860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGAAACGAATATGGAGGCTGTCCGACGCGGCCCAATCCGAGCTCTTCAGCCGCCACCGATGCTCCCCTAAACCCAAAACCCTAACTCCCTACACTTACACTCTCACCAACTCCGCCAATTTCAGATTCACTCGCGACGTTGTCAACAATGCCCAGAACCCTTCTCCTTCTTCTCCTCCACCCAACTCCTTCTCAAGCGTCATCGCTCTCTTCACCGACCAGCCCAGCCCACAAGAGATCAGGGCCCGGGAGGATCTGGCCCTCAAGGTCAATCAGCTGAGGGCGGAGCTGGTTCAGAGCGCCGGCGATTCCGAGAAGATTGTTAGGGTTTTGGAGGAGAAGGGCTGTGAGTTTTTGAGGAGCAGTAATTTTAAGGATGTAATTCCTATCGTGGAGCTTATGCATCAGTTGCGTCATTGGCCTCATTTGGCCCTGGAGGTTTTTAATTGGAGAAGAAATCAGGCGGATGGTGGCACTCCTATGACGGCTGAGGAGTATACCAAGGCTATTACATTTGCAGGTAAAATTAAAAATGTTCAACTTGCCCTTGAGTTATTCGATGAAGCTGTAAACAAGCGGATCAAGACAACTTCTATGTATAATGCACTCATGAGTGCTTATGTGCTCAATGGCCATACTGCTAAATGTCAGTCTTTGTTTCGGGACCTCAAGAGGGAACAGTATATCACACCTACCATTGTGACATACAACATTCTCATTTCCGTCTTTGGTCGATTGATGCTAGTTGATCATATGGAGGCAACTCTTCGGAGGTTAAAGGAATCAGATCTCTCCCCTAATTTAGGCACATACAATAATTTAATTGCTGGATACATTACTGCTTGGATGTGGGATAGAATGGAAAAAACTTTCGAAATGATGAAGGCAGGCCCTGTTAGTCCTAATATTAGCACCTACTTGTTAATGCTTCGAGGATATGCTCATTCAGGTAATCTGGTAAAGATGGAGGAGACGTATGAGTTGGTGAAACATCATGTAAACGACAAGGAAATCCCATTGATAAGGGCTATGATATGTGCATATTGCAGGAGTTCTGTCACAGACAGAGTGCAAAAAATACACACACTGATGAACCTTATTCCAGAAAATCAATACAGGCCTTGGTTGAATGTAATGCTGATTAGGGTTTATGCTCAAGAGGATTGTTTTGAGGCGATGGAGAGGTCAATAAATGAAGCATTTGAGCGCAAAACCTCCGTACATACTGCCGGTTTGATGCGATCTATAGTTGCGAGTTATTTCAGATGCAAAGAGGTGGACAGACTAGCACATTTTGTGAAGCGTGCAGAATGTGCTAGGTGGAGAATTTGCCGGTCCCTATATCACTGTAAGATGGTCATGTATGCATCAGAACAGCGCTTAGAAGAAATGGAGAATGTCCTTGGTGAGATGGCGTGTTTTAAGTTGGACCGCACGAAGAAAACATTTTGGATATTGTATCATGCCTACTCTAGTTGTGGTCAAAGAAATAAGGTTGCACAAGTATTAGGATCAATGTGGAAGCATGGTTATGAAGTTCCATTGGAGGTATTGTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

520

Amino Acids

60.21

Weight (kDa)

9.13

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	185 - 244	2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	197 - 243	8.2e-08	PPR repeat family
PPR_2	PF13041	266 - 315	1.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	2 cut(s)	29, 135
AciI	CCGC	7 cut(s)	29, 52, 114, 284, 464, 577, 1432
AclWI	GGATC	3 cut(s)	261, 587, 1519
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	1326
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	1221
AfeI	AGCGCT	1 cut(s)	1379
AfiI	CCNNNNNNNGG	2 cut(s)	673, 803
AgsI	TTSAA	2 cut(s)	539, 1129
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	5 cut(s)	43, 277, 289, 397, 566
AluI	AGCT	5 cut(s)	43, 277, 289, 397, 566
Alw21I	GWGCWC	2 cut(s)	45, 627
Alw26I	GTCTC	1 cut(s)	965
AlwI	GGATC	3 cut(s)	261, 587, 1519
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	246
Aor51HI	AGCGCT	1 cut(s)	1379
AoxI	GGCC	8 cut(s)	30, 243, 258, 419, 429, 631, 889, 1118
ApaI	GGGCCC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	1326
AspLEI	GCGC	3 cut(s)	302, 1209, 1380
AspS9I	GGNCC	9 cut(s)	31, 243, 244, 259, 430, 664, 890, 1335, 1429
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	4 cut(s)	97, 205, 997, 1418
AsuII	TTCGAA	1 cut(s)	873
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	3 cut(s)	664, 1335, 1429
BaeGI	GKGCMC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	633
BanII	GRGCYC	2 cut(s)	45, 247
Bbv12I	GWGCWC	2 cut(s)	45, 627
BbvCI	CCTCAGC	2 cut(s)	278, 489
BccI	CCATC	5 cut(s)	461, 958, 1171, 1348, 1405
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	434
BciVI	GTATCC	1 cut(s)	824
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	965
BfaI	CTAG	4 cut(s)	743, 1286, 1317, 1473
BfmI	CTRYAG	1 cut(s)	1245
BfoI	RGCGCY	2 cut(s)	303, 1381
BfuAI	ACCTGC	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	824
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	2 cut(s)	30, 52
BlsI	GCNGC	2 cut(s)	31, 53
Bme1390I	CCNGG	3 cut(s)	247, 248, 434
Bme18I	GGWCC	3 cut(s)	664, 1335, 1429
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	9 cut(s)	31, 243, 244, 259, 430, 664, 890, 1335, 1429
BmiI	GGNNCC	3 cut(s)	245, 665, 1337
BmrFI	CCNGG	3 cut(s)	247, 248, 434
BmsI	GCATC	6 cut(s)	50, 412, 729, 1227, 1256, 1376
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	278, 489
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	5 cut(s)	178, 248, 569, 653, 1140
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	5 cut(s)	246, 432, 501, 1121, 1402
BsaXI	ACNNNNNCTCC	7 cut(s)	47, 70, 77, 100, 959, 989, 1538
Bsc4I	CCNNNNNNNGG	2 cut(s)	673, 803
Bse118I	RCCGGY	3 cut(s)	302, 1229, 1332
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	5 cut(s)	246, 432, 501, 1121, 1402
BseGI	GGATG	3 cut(s)	382, 472, 852
BseLI	CCNNNNNNNGG	2 cut(s)	673, 803
BseMII	CTCAG	2 cut(s)	269, 480
BseRI	GAGGAG	5 cut(s)	165, 350, 373, 506, 983
BseSI	GKGCMC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	1326
Bsh1236I	CGCG	2 cut(s)	29, 135
BshFI	GGCC	8 cut(s)	32, 245, 260, 421, 431, 633, 891, 1120
BsiHKAI	GWGCWC	2 cut(s)	45, 627
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	247, 303, 1230, 1333
BslFI	GGGAC	2 cut(s)	677, 1321
BslI	CCNNNNNNNGG	2 cut(s)	673, 803
BsmAI	GTCTC	1 cut(s)	965
BsmBI	CGTCTC	1 cut(s)	965
BsmFI	GGGAC	2 cut(s)	677, 1321
BsnI	GGCC	8 cut(s)	32, 245, 260, 421, 431, 633, 891, 1120
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	873
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	45, 247, 627
Bsp143I	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	7 cut(s)	29, 52, 114, 284, 464, 577, 1432
BspANI	GGCC	8 cut(s)	32, 245, 260, 421, 431, 633, 891, 1120
BspCNI	CTCAG	2 cut(s)	270, 481
BspFNI	CGCG	2 cut(s)	29, 135
BspHI	TCATGA	2 cut(s)	609, 1559
BspLI	GGNNCC	3 cut(s)	245, 665, 1337
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	261, 587, 1519
BspQI	GCTCTTC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	873
BsrFI	RCCGGY	3 cut(s)	302, 1229, 1332
BssAI	RCCGGY	3 cut(s)	302, 1229, 1332
BssECI	CCNNGG	5 cut(s)	246, 432, 501, 1121, 1402
BssMI	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
BssNAI	GTATAC	1 cut(s)	498
BssT1I	CCWWGG	3 cut(s)	501, 1121, 1402
Bst1107I	GTATAC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	2 cut(s)	681, 1349
Bst6I	CTCTTC	3 cut(s)	50, 215, 771
BstAPI	GCANNNNNTGC	2 cut(s)	409, 1313
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	3 cut(s)	304, 889, 1305
BstDEI	CTNAG	3 cut(s)	278, 489, 1381
BstENI	CCTNNNNNAGG	1 cut(s)	801
BstF5I	GGATG	3 cut(s)	382, 472, 852
BstFNI	CGCG	2 cut(s)	29, 135
BstH2I	RGCGCY	2 cut(s)	303, 1381
BstHHI	GCGC	3 cut(s)	302, 1209, 1380
BstKTI	GATC	7 cut(s)	240, 256, 582, 751, 790, 1244, 1514
BstMAI	GTCTC	1 cut(s)	965
BstMBI	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 409, 418, 1313
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	3 cut(s)	245, 246, 432
BstSFI	CTRYAG	1 cut(s)	1245
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	2 cut(s)	29, 135
BstX2I	RGATCY	2 cut(s)	253, 787
BstYI	RGATCY	2 cut(s)	253, 787
BstZ17I	GTATAC	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	8 cut(s)	32, 245, 260, 421, 431, 633, 891, 1120
BtgZI	GCGATG	2 cut(s)	187, 1190
BtsCI	GGATG	3 cut(s)	382, 472, 852
BtsIMutI	CAGTG	2 cut(s)	1085, 1345
BtuMI	TCGCGA	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	304, 889, 1305
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	2 cut(s)	609, 1559
CfoI	GCGC	3 cut(s)	302, 1209, 1380
Cfr10I	RCCGGY	3 cut(s)	302, 1229, 1332
Cfr13I	GGNCC	9 cut(s)	31, 243, 244, 259, 430, 664, 890, 1335, 1429
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	35, 187, 401
Csp6I	GTAC	1 cut(s)	1220
CviAII	CATG	6 cut(s)	610, 995, 1360, 1463, 1526, 1560
CviQI	GTAC	1 cut(s)	1220
DdeI	CTNAG	3 cut(s)	278, 489, 1381
DpnI	GATC	7 cut(s)	239, 255, 581, 750, 789, 1243, 1513
DpnII	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	3 cut(s)	50, 215, 771
EarI	CTCTTC	3 cut(s)	50, 215, 771
EciI	GGCGGA	3 cut(s)	103, 299, 479
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	501, 1121, 1402
Eco147I	AGGCCT	1 cut(s)	1120
Eco24I	GRGCYC	2 cut(s)	45, 247
Eco47I	GGWCC	3 cut(s)	664, 1335, 1429
Eco47III	AGCGCT	1 cut(s)	1379
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	801
EcoO109I	RGGNCCY	3 cut(s)	243, 664, 890
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	3 cut(s)	501, 1121, 1402
EcoT22I	ATGCAT	2 cut(s)	405, 1369
EcoT38I	GRGCYC	2 cut(s)	45, 247
ErhI	CCWWGG	3 cut(s)	501, 1121, 1402
Esp3I	CGTCTC	1 cut(s)	965
FaeI	CATG	6 cut(s)	613, 998, 1363, 1466, 1529, 1563
FaqI	GGGAC	2 cut(s)	677, 1321
FatI	CATG	6 cut(s)	609, 994, 1359, 1462, 1525, 1559
FauNDI	CATATG	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	2 cut(s)	30, 52
FokI	GGATG	3 cut(s)	389, 479, 859
FriOI	GRGCYC	2 cut(s)	45, 247
Fsp4HI	GCNGC	2 cut(s)	30, 52
FspBI	CTAG	4 cut(s)	743, 1286, 1317, 1473
GlaI	GCGC	3 cut(s)	301, 1208, 1379
GluI	GCNGC	2 cut(s)	30, 52
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	2 cut(s)	303, 1381
HaeIII	GGCC	8 cut(s)	32, 245, 260, 421, 431, 633, 891, 1120
HapII	CCGG	4 cut(s)	247, 303, 1230, 1333
HgaI	GACGC	3 cut(s)	35, 187, 401
HhaI	GCGC	3 cut(s)	302, 1209, 1380
Hin1II	CATG	6 cut(s)	613, 998, 1363, 1466, 1529, 1563
Hin6I	GCGC	3 cut(s)	300, 1207, 1378
HinP1I	GCGC	3 cut(s)	300, 1207, 1378
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	126, 308, 782
HpaII	CCGG	4 cut(s)	247, 303, 1230, 1333
HphI	GGTGA	4 cut(s)	97, 205, 997, 1418
Hpy166II	GTNNAC	5 cut(s)	145, 498, 571, 1000, 1279
Hpy188I	TCNGA	9 cut(s)	25, 40, 125, 297, 313, 771, 787, 1265, 1372
Hpy188III	TCNNGA	8 cut(s)	134, 583, 610, 662, 670, 1103, 1157, 1560
Hpy8I	GTNNAC	5 cut(s)	145, 498, 571, 1000, 1279
Hpy99I	CGWCG	2 cut(s)	29, 140
HpyAV	CCTTC	5 cut(s)	171, 177, 199, 334, 877
HpyCH4III	ACNGT	2 cut(s)	681, 1349
HpyCH4IV	ACGT	2 cut(s)	138, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 409, 418, 1313
HpyF3I	CTNAG	3 cut(s)	278, 489, 1381
HpySE526I	ACGT	2 cut(s)	138, 974
Hsp92II	CATG	6 cut(s)	613, 998, 1363, 1466, 1529, 1563
HspAI	GCGC	3 cut(s)	300, 1207, 1378
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	4 cut(s)	68, 286, 360, 394
LweI	GCATC	6 cut(s)	50, 412, 729, 1227, 1256, 1376
MaeI	CTAG	4 cut(s)	743, 1286, 1317, 1473
MaeII	ACGT	2 cut(s)	138, 974
MaeIII	GTNAC	2 cut(s)	700, 1057
MalI	GATC	7 cut(s)	239, 255, 581, 750, 789, 1243, 1513
MboI	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
MboII	GAAGA	8 cut(s)	37, 162, 202, 328, 465, 758, 1397, 1450
MflI	RGATCY	2 cut(s)	253, 787
MhlI	GDGCHC	3 cut(s)	45, 247, 627
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	9 cut(s)	118, 367, 381, 445, 525, 799, 817, 822, 1326
MluNI	TGGCCA	1 cut(s)	633
MmeI	TCCRAC	2 cut(s)	48, 1407
Mox20I	TGGCCA	1 cut(s)	633
Mph1103I	ATGCAT	2 cut(s)	405, 1369
MreI	CGCCGGCG	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	7 cut(s)	372, 444, 528, 776, 821, 923, 1422
MslI	CAYNNNNRTG	3 cut(s)	479, 1088, 1530
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	4 cut(s)	247, 303, 1230, 1333
MspR9I	CCNGG	3 cut(s)	247, 248, 434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	29, 135
MwoI	GCNNNNNNNGC	4 cut(s)	60, 409, 418, 1313
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	2 cut(s)	247, 248
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	6 cut(s)	613, 998, 1363, 1466, 1529, 1563
NlaIV	GGNNCC	3 cut(s)	245, 665, 1337
NmuCI	GTSAC	2 cut(s)	700, 1057
NruI	TCGCGA	1 cut(s)	135
NsiI	ATGCAT	2 cut(s)	405, 1369
NspV	TTCGAA	1 cut(s)	873
PagI	TCATGA	2 cut(s)	609, 1559
PceI	AGGCCT	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	126, 308, 782
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	31, 53
PpuMI	RGGWCCY	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	3 cut(s)	245, 665, 1337
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	9 cut(s)	31, 243, 244, 259, 430, 664, 890, 1335, 1429
PspPPI	RGGWCCY	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	253, 787
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	1 cut(s)	1221
RsaNI	GTAC	1 cut(s)	1220
RseI	CAYNNNNRTG	3 cut(s)	479, 1088, 1530
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	7 cut(s)	372, 444, 528, 776, 821, 923, 1422
SatI	GCNGC	2 cut(s)	30, 52
Sau3AI	GATC	7 cut(s)	237, 253, 579, 748, 787, 1241, 1511
Sau96I	GGNCC	9 cut(s)	31, 243, 244, 259, 430, 664, 890, 1335, 1429
ScrFI	CCNGG	3 cut(s)	247, 248, 434
SduI	GDGCHC	3 cut(s)	45, 247, 627
SfaNI	GCATC	6 cut(s)	50, 412, 729, 1227, 1256, 1376
SfcI	CTRYAG	1 cut(s)	1245
SfuI	TTCGAA	1 cut(s)	873
SgrAI	CRCCGGYG	1 cut(s)	302
SinI	GGWCC	3 cut(s)	664, 1335, 1429
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	3 cut(s)	479, 1088, 1530
SmlI	CTYRAG	5 cut(s)	193, 263, 548, 668, 1155
SmoI	CTYRAG	5 cut(s)	193, 263, 548, 668, 1155
Sse9I	AATT	9 cut(s)	118, 367, 381, 445, 525, 799, 817, 822, 1326
SseBI	AGGCCT	1 cut(s)	1120
SsiI	CCGC	7 cut(s)	29, 52, 114, 284, 464, 577, 1432
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	4 cut(s)	743, 1286, 1317, 1473
SstI	GAGCTC	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	1120
StyD4I	CCNGG	3 cut(s)	245, 246, 432
StyI	CCWWGG	3 cut(s)	501, 1121, 1402
TaaI	ACNGT	2 cut(s)	681, 1349
TaiI	ACGT	2 cut(s)	141, 977
TaqI	TCGA	4 cut(s)	558, 733, 873, 931
TasI	AATT	9 cut(s)	118, 367, 381, 445, 525, 799, 817, 822, 1326
TauI	GCSGC	2 cut(s)	32, 54
TfiI	GAWTC	3 cut(s)	126, 308, 782
Tru1I	TTAA	7 cut(s)	372, 444, 528, 776, 821, 923, 1422
Tru9I	TTAA	7 cut(s)	372, 444, 528, 776, 821, 923, 1422
TscAI	CASTG	2 cut(s)	1092, 1352
TseFI	GTSAC	2 cut(s)	700, 1057
Tsp45I	GTSAC	2 cut(s)	700, 1057
TspDTI	ATGAA	6 cut(s)	17, 576, 896, 1106, 1209, 1548
TspGWI	ACGGA	2 cut(s)	712, 1207
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	1092, 1352
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	3 cut(s)	664, 1335, 1429
XagI	CCTNNNNNAGG	1 cut(s)	801
XapI	RAATTY	1 cut(s)	1326
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	4 cut(s)	743, 1286, 1317, 1473
Zsp2I	ATGCAT	2 cut(s)	405, 1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.