Rorug06G0224600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005481
Physical Location & Seq
Forward (+)
35881847 .. 35887528
5682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0224600.1

Sequence Viewer

Length: 984 bp
ATGGATTTTGTGACGCCACCTATTACAATGCCAACATTTCCGTCACAAAAGGCTCAATTTTCCGTCGCGAAAATTCAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTTGTATGCAGGAGCAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGTCTGTGAGATGCATTGAGATTAACAAAGAATCAAAGCTATCCTTTGAGAAGACGGTTGCCCGCCTGCCAAACATAGTAGATAGCAGCATCAGCTGGCATCATGCAGACACTTCTAAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCAGATATCTACATGTTCAATGGAATGGCAGAGCTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGTTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGTCATGAATCAACTGGATTATTCCGATTCATTGCTGGAGTAGGTAGAAGCTTGACTGTTGCTAATACATTTGGCTCATTTGCACTAGTCATGCTTTTCGCTTTGGGGGGCTTTGTCCTGTCAAGAGAAAATATAAAGAAGTGGTGGATATGGGGCTACTGGATATCACCTTTAATGTATGGGCAGAATGCAATTGTAGTTAATGAATTCCTTGGCAAGAGTTGGTCACATGTTCTTCCAAACTCAAATGAATCATTAGGAGTTGAAATTCTGAAATCTCGTGGATTTCGTACGCATGCATATTGGTTTCCCAAACTAAGGTATGAACTCCTCATTTAA

Protein Analysis

327

Amino Acids

37.17

Weight (kDa)

9.53

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 150 - 285 4.1e-28 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 2 cut(s) 116, 156
AccB7I CCANNNNNTGG 1 cut(s) 641
AccII CGCG 1 cut(s) 68
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 562, 626
AcsI RAATTY 3 cut(s) 72, 851, 912
AcuI CTGAAG 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 329, 937
AfiI CCNNNNNNNGG 2 cut(s) 641, 963
AflIII ACRYGT 2 cut(s) 447, 874
AgsI TTSAA 4 cut(s) 77, 454, 587, 911
AhlI ACTAGT 1 cut(s) 730
AluBI AGCT 5 cut(s) 205, 261, 469, 490, 696
AluI AGCT 5 cut(s) 205, 261, 469, 490, 696
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 2 cut(s) 562, 626
Aor13HI TCCGGA 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 149, 252
ApoI RAATTY 3 cut(s) 72, 851, 912
AsuHPI GGTGA 3 cut(s) 568, 601, 804
BauI CACGAG 2 cut(s) 318, 924
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 136, 264
BccI CCATC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 480
BfuAI ACCTGC 2 cut(s) 116, 156
BisI GCNGC 2 cut(s) 150, 253
BlsI GCNGC 2 cut(s) 151, 254
BmiI GGNNCC 1 cut(s) 560
BmsI GCATC 4 cut(s) 107, 167, 264, 274
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 533, 856
BsaWI WCCGGW 1 cut(s) 388
BsaXI ACNNNNNCTCC 4 cut(s) 87, 114, 117, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 641, 963
Bse1I ACTGG 3 cut(s) 494, 664, 809
Bse3DI GCAATG 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 388
BseDI CCNNGG 2 cut(s) 533, 856
BseGI GGATG 2 cut(s) 349, 397
BseLI CCNNNNNNNGG 2 cut(s) 641, 963
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 3 cut(s) 494, 664, 809
BseRI GAGGAG 2 cut(s) 551, 965
BseXI GCAGC 2 cut(s) 136, 264
Bsh1236I CGCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 389, 551
BsiWI CGTACG 1 cut(s) 935
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 641, 963
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 838
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 388
Bsp143I GATC 2 cut(s) 567, 631
Bsp19I CCATGG 1 cut(s) 533
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 337
BspEI TCCGGA 1 cut(s) 388
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 560
BspMI ACCTGC 2 cut(s) 116, 156
BspPI GGATC 2 cut(s) 562, 626
BspQI GCTCTTC 2 cut(s) 423, 527
BsrDI GCAATG 1 cut(s) 675
BsrI ACTGG 3 cut(s) 494, 664, 809
BssECI CCNNGG 2 cut(s) 533, 856
BssMI GATC 2 cut(s) 567, 631
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 2 cut(s) 318, 924
BssT1I CCWWGG 2 cut(s) 533, 856
Bst2BI CACGAG 2 cut(s) 318, 924
Bst4CI ACNGT 2 cut(s) 223, 703
Bst6I CTCTTC 3 cut(s) 376, 423, 527
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 4 cut(s) 229, 233, 263, 942
BstDEI CTNAG 3 cut(s) 282, 324, 962
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 2 cut(s) 349, 397
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 570, 634
BstMBI GATC 2 cut(s) 567, 631
BstMWI GCNNNNNNNGC 3 cut(s) 104, 258, 551
BstNSI RCATGY 3 cut(s) 451, 878, 944
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 136, 264
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 2 cut(s) 349, 397
BtsIMutI CAGTG 1 cut(s) 501
BtuMI TCGCGA 1 cut(s) 68
BveI ACCTGC 2 cut(s) 116, 156
Cac8I GCNNGC 4 cut(s) 229, 233, 263, 942
CciI TCATGA 1 cut(s) 649
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 328, 936
CviAII CATG 8 cut(s) 269, 448, 534, 555, 650, 736, 875, 941
CviQI GTAC 2 cut(s) 328, 936
DdeI CTNAG 3 cut(s) 282, 324, 962
DpnI GATC 2 cut(s) 569, 633
DpnII GATC 2 cut(s) 567, 631
Eam1104I CTCTTC 3 cut(s) 376, 423, 527
EarI CTCTTC 3 cut(s) 376, 423, 527
Eco130I CCWWGG 2 cut(s) 533, 856
Eco32I GATATC 2 cut(s) 442, 810
Eco57I CTGAAG 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 851
EcoRV GATATC 2 cut(s) 442, 810
EcoT14I CCWWGG 2 cut(s) 533, 856
EcoT22I ATGCAT 2 cut(s) 182, 946
ErhI CCWWGG 2 cut(s) 533, 856
FaeI CATG 8 cut(s) 272, 451, 537, 558, 653, 739, 878, 944
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 506, 538
FaqI GGGAC 1 cut(s) 71
FatI CATG 8 cut(s) 268, 447, 533, 554, 649, 735, 874, 940
FauI CCCGC 1 cut(s) 236
FauNDI CATATG 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 150, 253
FokI GGATG 2 cut(s) 356, 404
Fsp4HI GCNGC 2 cut(s) 150, 253
FspBI CTAG 1 cut(s) 731
GluI GCNGC 2 cut(s) 150, 253
GsuI CTGGAG 1 cut(s) 702
HapII CCGG 2 cut(s) 389, 551
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 8 cut(s) 272, 451, 537, 558, 653, 739, 878, 944
HindIII AAGCTT 2 cut(s) 488, 694
HinfI GANTC 4 cut(s) 197, 653, 672, 896
HpaII CCGG 2 cut(s) 389, 551
HphI GGTGA 3 cut(s) 568, 601, 804
Hpy188I TCNGA 6 cut(s) 137, 310, 427, 439, 671, 918
Hpy188III TCNNGA 5 cut(s) 67, 389, 565, 650, 768
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 223, 703
HpyCH4V TGCA 8 cut(s) 119, 165, 180, 272, 545, 728, 836, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 258, 551
HpyF3I CTNAG 3 cut(s) 282, 324, 962
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 8 cut(s) 272, 451, 537, 558, 653, 739, 878, 944
Kpn2I TCCGGA 1 cut(s) 388
Kzo9I GATC 2 cut(s) 567, 631
LguI GCTCTTC 2 cut(s) 423, 527
LmnI GCTCC 3 cut(s) 95, 122, 564
Lsp1109I GCAGC 2 cut(s) 136, 264
LweI GCATC 4 cut(s) 107, 167, 264, 274
MaeI CTAG 1 cut(s) 731
MaeIII GTNAC 3 cut(s) 10, 42, 870
MalI GATC 2 cut(s) 569, 633
MboI GATC 2 cut(s) 567, 631
MboII GAAGA 6 cut(s) 229, 393, 414, 440, 514, 872
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 5 cut(s) 56, 72, 837, 851, 912
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 5 cut(s) 99, 293, 342, 572, 582
Mph1103I ATGCAT 2 cut(s) 182, 946
MroI TCCGGA 1 cut(s) 388
MseI TTAA 5 cut(s) 189, 287, 818, 846, 982
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 2 cut(s) 389, 551
MunI CAATTG 1 cut(s) 837
Mva1269I GAATGC 1 cut(s) 838
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 104, 258, 551
NcoI CCATGG 1 cut(s) 533
NdeI CATATG 1 cut(s) 541
NdeII GATC 2 cut(s) 567, 631
NlaIII CATG 8 cut(s) 272, 451, 537, 558, 653, 739, 878, 944
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 3 cut(s) 10, 42, 870
NruI TCGCGA 1 cut(s) 68
NsiI ATGCAT 2 cut(s) 182, 946
NspI RCATGY 3 cut(s) 451, 878, 944
PaeI GCATGC 1 cut(s) 944
PagI TCATGA 1 cut(s) 649
PaqCI CACCTGC 1 cut(s) 116
PciI ACATGT 2 cut(s) 447, 874
PciSI GCTCTTC 2 cut(s) 423, 527
PcsI WCGNNNNNNNCGW 1 cut(s) 931
PctI GAATGC 1 cut(s) 838
PfeI GAWTC 4 cut(s) 197, 653, 672, 896
Pfl23II CGTACG 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 641
PkrI GCNGC 2 cut(s) 151, 254
PscI ACATGT 2 cut(s) 447, 874
PsiI TTATAA 1 cut(s) 504
PspLI CGTACG 1 cut(s) 935
PspN4I GGNNCC 1 cut(s) 560
PsuI RGATCY 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 261
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 2 cut(s) 329, 937
RsaNI GTAC 2 cut(s) 328, 936
SapI GCTCTTC 2 cut(s) 423, 527
SaqAI TTAA 5 cut(s) 189, 287, 818, 846, 982
SatI GCNGC 2 cut(s) 150, 253
Sau3AI GATC 2 cut(s) 567, 631
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 4 cut(s) 107, 167, 264, 274
SfcI CTRYAG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SpeI ACTAGT 1 cut(s) 730
SphI GCATGC 1 cut(s) 944
Sse9I AATT 5 cut(s) 56, 72, 837, 851, 912
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 731
StyI CCWWGG 2 cut(s) 533, 856
TaaI ACNGT 2 cut(s) 223, 703
TaqI TCGA 1 cut(s) 473
TasI AATT 5 cut(s) 56, 72, 837, 851, 912
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 4 cut(s) 197, 653, 672, 896
Tru1I TTAA 5 cut(s) 189, 287, 818, 846, 982
Tru9I TTAA 5 cut(s) 189, 287, 818, 846, 982
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 3 cut(s) 10, 42, 870
TseI GCWGC 2 cut(s) 149, 252
Tsp45I GTSAC 3 cut(s) 10, 42, 870
TspDTI ATGAA 6 cut(s) 408, 664, 666, 864, 909, 984
TspGWI ACGGA 2 cut(s) 30, 52
TspRI CASTG 1 cut(s) 501
Van91I CCANNNNNTGG 1 cut(s) 641
XapI RAATTY 3 cut(s) 72, 851, 912
XceI RCATGY 3 cut(s) 451, 878, 944
XspI CTAG 1 cut(s) 731
Zsp2I ATGCAT 2 cut(s) 182, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.