Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

53525155 .. 53528981

Gene Structure 3827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGAAACGAATATGGAGGCTCTCCGACGCGGCCCAATCCGAGCTCTTCAGCCGCCACCGATGCTCCCCTAAACCCAAAAGCCTAACCCCCTACACTTACACCCTCACCAACTCGGCCAATTTCAGATTCACTCGCGACGTCGTCAACAATGCCCAGAACCCTTCTCCTCCTCCTTCTTCTTCTTCTCCTCCACCCAACTCCTTCTCAAGCGTCATCGCTCTCTTCACCGACCAGCCCAGCCCACAAGAGATGAGGGCCCGGGAGGATCTGGCCCTCAAGGTCAATCAGCTGAGGGCGGAGCTGGTTCAGAGCGCCGGCGATTCCGAGAAGATTGTTAGGGTTTTGGAGGAGAAGGGCTGTGAGTTTTTGTGGAGCAGTTATTTTAAGGATGTAATTCCTATCGTGGAGCTTATGCATCAGTTGCGTCATTGGCCTCATTTGGCCCTGGAGGTTTTTAATTGGAGAAGAAATCAGGCGGATTGTGGCACTCCTATGACGGCTGAGGAGTATACCAAGGCTATTACATTTGCAGGTAAAATTAAGAATGTTCAACTTGCCCTTGAGTTATTCGATGAAGCTGTAAACAAGCGGATCAAGACAACTTCTATGTATAATGCACTCATGAGTGCTTATGTGCTCAATGGCCATACTGCTAAATGTCAGTCTTTGTTTCGGGACCTCAAGAGGGAACAGTATATCACACCTACCATTGTGACATACAACATTCTTATTTCCGTCTTTGGTCGATTGATGCTAGTTGATCATATGGAGGCAACTCTTCGGAGGTTAAAGGAATCAGATCTCTCCCCTAATTTAGGCACATACAATAAGTTAATTGCTGGATACATTACTGCTTGGATGTGGGATAGAATGGAAAAAACTTTCGAAATGATGAAGGCAGGCCCTGTTAGTCCTGATATTAGCACCTACTTGCTAATGCTTCGAGGTTATGCTCATTCAGGTAATCTGGTAAAGATGGAGGAGACGTATGAGTTGGTGAAACATCATGTAAACGACAAGGAAATCCCATTGATAAGGGCTATGATATGTGCATATTGCAGGAGTTCTGTCACAGACAGAGTGCAAAAAATACACACACTGATGAACCTTATTCCAGAAAATCAATACAGGCCTTGGTTGAATGTAATGCTGATTAGGGTTTATGCTCAAGAGGATTGTTTTGAGGCGATGGAGAGGTCAATAAATGAAGCATTTGAGCGCAAAACCTCTGTGCATACTGCCGGTTTGATGCGATCTATAGTTGCGAGTTATTTCAGATGGAAAGAGGTGGACAGACTAGCACATTTTGTGAAGCGTGCAGAATGTGCTAGGTGGAGAATTTGCCGGTCCCTATATCACTGTAAGATGGTCATGTATGCATCAGAACAGCGCTTAGAAGAAATGGAGAATGTCCTTGGTGAGATGGCGTGTTTTAAGTTGAACCGCACGAAGAAAACATTTTGGATATTGTATCATGCCTACTCTAGTTGTGGTCAAAGAAATAAGGTTGCACAAGTATTAGGATCAATGTGGAAGCATGGTTATGAAGTTCCATTGGAGGTATTGTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

524

Amino Acids

60.8

Weight (kDa)

9.12

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	189 - 248	2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	201 - 247	8.3e-08	PPR repeat family
PPR_2	PF13041	270 - 319	5.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	509
AccII	CGCG	2 cut(s)	29, 135
AciI	CCGC	6 cut(s)	29, 52, 296, 476, 589, 1444
AclWI	GGATC	3 cut(s)	273, 599, 1531
AcoI	YGGCCR	2 cut(s)	114, 643
AcsI	RAATTY	1 cut(s)	1338
AcuI	CTGAAG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	138
AfeI	AGCGCT	1 cut(s)	1391
AfiI	CCNNNNNNNGG	2 cut(s)	685, 815
AgsI	TTSAA	3 cut(s)	551, 1141, 1441
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	5 cut(s)	43, 289, 301, 409, 578
AluI	AGCT	5 cut(s)	43, 289, 301, 409, 578
Alw21I	GWGCWC	2 cut(s)	45, 639
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	3 cut(s)	273, 599, 1531
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	258
Aor51HI	AGCGCT	1 cut(s)	1391
AoxI	GGCC	9 cut(s)	30, 114, 255, 270, 431, 441, 643, 901, 1130
ApaI	GGGCCC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	1338
AspLEI	GCGC	3 cut(s)	314, 1221, 1392
AspS9I	GGNCC	8 cut(s)	31, 255, 256, 271, 442, 676, 902, 1347
AsuC2I	CCSGG	2 cut(s)	259, 260
AsuHPI	GGTGA	4 cut(s)	97, 217, 1009, 1430
AsuII	TTCGAA	1 cut(s)	885
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	676, 1347
BaeGI	GKGCMC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	2 cut(s)	45, 259
Bbv12I	GWGCWC	2 cut(s)	45, 639
BbvCI	CCTCAGC	2 cut(s)	290, 501
BccI	CCATC	5 cut(s)	970, 1183, 1272, 1360, 1417
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	836
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	2 cut(s)	259, 260
BcoDI	GTCTC	1 cut(s)	977
BfaI	CTAG	4 cut(s)	755, 1298, 1329, 1485
BfmI	CTRYAG	1 cut(s)	1257
BfoI	RGCGCY	2 cut(s)	315, 1393
BfuAI	ACCTGC	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	836
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	2 cut(s)	30, 52
BlsI	GCNGC	2 cut(s)	31, 53
Bme1390I	CCNGG	3 cut(s)	259, 260, 446
Bme18I	GGWCC	2 cut(s)	676, 1347
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	8 cut(s)	31, 255, 256, 271, 442, 676, 902, 1347
BmiI	GGNNCC	3 cut(s)	257, 677, 1349
BmrFI	CCNGG	3 cut(s)	259, 260, 446
BmsI	GCATC	5 cut(s)	50, 424, 741, 1239, 1388
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	2 cut(s)	290, 501
Bpu14I	TTCGAA	1 cut(s)	885
BpuEI	CTTGAG	5 cut(s)	190, 260, 581, 665, 1152
BpuMI	CCSGG	2 cut(s)	259, 260
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	5 cut(s)	258, 444, 513, 1133, 1414
BsaXI	ACNNNNNCTCC	5 cut(s)	47, 77, 971, 1001, 1550
Bsc4I	CCNNNNNNNGG	2 cut(s)	685, 815
Bse118I	RCCGGY	3 cut(s)	314, 1241, 1344
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	5 cut(s)	258, 444, 513, 1133, 1414
BseGI	GGATG	2 cut(s)	394, 864
BseLI	CCNNNNNNNGG	2 cut(s)	685, 815
BseMII	CTCAG	2 cut(s)	281, 492
BseRI	GAGGAG	6 cut(s)	156, 159, 177, 362, 518, 995
BseSI	GKGCMC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	1338
Bsh1236I	CGCG	2 cut(s)	29, 135
BshFI	GGCC	9 cut(s)	32, 116, 257, 272, 433, 443, 645, 903, 1132
BsiHKAI	GWGCWC	2 cut(s)	45, 639
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	259, 315, 1242, 1345
BslFI	GGGAC	2 cut(s)	689, 1333
BslI	CCNNNNNNNGG	2 cut(s)	685, 815
BsmAI	GTCTC	1 cut(s)	977
BsmBI	CGTCTC	1 cut(s)	977
BsmFI	GGGAC	2 cut(s)	689, 1333
BsnI	GGCC	9 cut(s)	32, 116, 257, 272, 433, 443, 645, 903, 1132
BsoBI	CYCGRG	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	885
Bsp120I	GGGCCC	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	45, 259, 639
Bsp143I	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	6 cut(s)	29, 52, 296, 476, 589, 1444
BspANI	GGCC	9 cut(s)	32, 116, 257, 272, 433, 443, 645, 903, 1132
BspCNI	CTCAG	2 cut(s)	282, 493
BspFNI	CGCG	2 cut(s)	29, 135
BspHI	TCATGA	2 cut(s)	621, 1571
BspLI	GGNNCC	3 cut(s)	257, 677, 1349
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	273, 599, 1531
BspQI	GCTCTTC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	885
BsrFI	RCCGGY	3 cut(s)	314, 1241, 1344
BssAI	RCCGGY	3 cut(s)	314, 1241, 1344
BssECI	CCNNGG	5 cut(s)	258, 444, 513, 1133, 1414
BssMI	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
BssNAI	GTATAC	1 cut(s)	510
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	513, 1133, 1414
Bst1107I	GTATAC	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	693, 1361
Bst6I	CTCTTC	3 cut(s)	50, 227, 783
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	421, 1325
BstBI	TTCGAA	1 cut(s)	885
BstC8I	GCNNGC	3 cut(s)	316, 901, 1317
BstDEI	CTNAG	3 cut(s)	290, 501, 1393
BstENI	CCTNNNNNAGG	1 cut(s)	813
BstF5I	GGATG	2 cut(s)	394, 864
BstFNI	CGCG	2 cut(s)	29, 135
BstH2I	RGCGCY	2 cut(s)	315, 1393
BstHHI	GCGC	3 cut(s)	314, 1221, 1392
BstKTI	GATC	6 cut(s)	268, 594, 763, 802, 1256, 1526
BstMAI	GTCTC	1 cut(s)	977
BstMBI	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 421, 430, 1325
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	257, 258, 444
BstSFI	CTRYAG	1 cut(s)	1257
BstSLI	GKGCMC	1 cut(s)	259
BstUI	CGCG	2 cut(s)	29, 135
BstX2I	RGATCY	2 cut(s)	265, 799
BstYI	RGATCY	2 cut(s)	265, 799
BstZ17I	GTATAC	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	9 cut(s)	32, 116, 257, 272, 433, 443, 645, 903, 1132
BtgZI	GCGATG	2 cut(s)	199, 1202
BtsCI	GGATG	2 cut(s)	394, 864
BtsIMutI	CAGTG	2 cut(s)	1097, 1357
BtuMI	TCGCGA	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	316, 901, 1317
CaiI	CAGNNNCTG	1 cut(s)	905
CciI	TCATGA	2 cut(s)	621, 1571
CfoI	GCGC	3 cut(s)	314, 1221, 1392
Cfr10I	RCCGGY	3 cut(s)	314, 1241, 1344
Cfr13I	GGNCC	8 cut(s)	31, 255, 256, 271, 442, 676, 902, 1347
Cfr9I	CCCGGG	1 cut(s)	258
CseI	GACGC	3 cut(s)	35, 199, 413
CviAII	CATG	6 cut(s)	622, 1007, 1372, 1475, 1538, 1572
DdeI	CTNAG	3 cut(s)	290, 501, 1393
DpnI	GATC	6 cut(s)	267, 593, 762, 801, 1255, 1525
DpnII	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
EaeI	YGGCCR	2 cut(s)	114, 643
Eam1104I	CTCTTC	3 cut(s)	50, 227, 783
EarI	CTCTTC	3 cut(s)	50, 227, 783
EciI	GGCGGA	2 cut(s)	311, 491
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	513, 1133, 1414
Eco147I	AGGCCT	1 cut(s)	1132
Eco24I	GRGCYC	2 cut(s)	45, 259
Eco47I	GGWCC	2 cut(s)	676, 1347
Eco47III	AGCGCT	1 cut(s)	1391
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	813
EcoO109I	RGGNCCY	3 cut(s)	255, 676, 902
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	3 cut(s)	513, 1133, 1414
EcoT22I	ATGCAT	2 cut(s)	417, 1381
EcoT38I	GRGCYC	2 cut(s)	45, 259
ErhI	CCWWGG	3 cut(s)	513, 1133, 1414
Esp3I	CGTCTC	1 cut(s)	977
FaeI	CATG	6 cut(s)	625, 1010, 1375, 1478, 1541, 1575
FaqI	GGGAC	2 cut(s)	689, 1333
FatI	CATG	6 cut(s)	621, 1006, 1371, 1474, 1537, 1571
FauNDI	CATATG	1 cut(s)	765
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	2 cut(s)	30, 52
FokI	GGATG	2 cut(s)	401, 871
FriOI	GRGCYC	2 cut(s)	45, 259
Fsp4HI	GCNGC	2 cut(s)	30, 52
FspBI	CTAG	4 cut(s)	755, 1298, 1329, 1485
GlaI	GCGC	3 cut(s)	313, 1220, 1391
GluI	GCNGC	2 cut(s)	30, 52
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	467
HaeII	RGCGCY	2 cut(s)	315, 1393
HaeIII	GGCC	9 cut(s)	32, 116, 257, 272, 433, 443, 645, 903, 1132
HapII	CCGG	4 cut(s)	259, 315, 1242, 1345
HgaI	GACGC	3 cut(s)	35, 199, 413
HhaI	GCGC	3 cut(s)	314, 1221, 1392
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	625, 1010, 1375, 1478, 1541, 1575
Hin6I	GCGC	3 cut(s)	312, 1219, 1390
HinP1I	GCGC	3 cut(s)	312, 1219, 1390
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	126, 320, 794
HpaII	CCGG	4 cut(s)	259, 315, 1242, 1345
HphI	GGTGA	4 cut(s)	97, 217, 1009, 1430
Hpy166II	GTNNAC	5 cut(s)	145, 510, 583, 1012, 1291
Hpy188I	TCNGA	9 cut(s)	25, 40, 125, 309, 325, 783, 799, 1277, 1384
Hpy188III	TCNNGA	9 cut(s)	134, 595, 622, 674, 682, 914, 1115, 1169, 1572
Hpy8I	GTNNAC	5 cut(s)	145, 510, 583, 1012, 1291
Hpy99I	CGWCG	3 cut(s)	29, 140, 143
HpyAV	CCTTC	5 cut(s)	171, 183, 211, 346, 889
HpyCH4III	ACNGT	2 cut(s)	693, 1361
HpyCH4IV	ACGT	2 cut(s)	138, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 421, 430, 1325
HpyF3I	CTNAG	3 cut(s)	290, 501, 1393
HpySE526I	ACGT	2 cut(s)	138, 986
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	625, 1010, 1375, 1478, 1541, 1575
HspAI	GCGC	3 cut(s)	312, 1219, 1390
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	4 cut(s)	68, 298, 372, 406
LweI	GCATC	5 cut(s)	50, 424, 741, 1239, 1388
MaeI	CTAG	4 cut(s)	755, 1298, 1329, 1485
MaeII	ACGT	2 cut(s)	138, 986
MaeIII	GTNAC	2 cut(s)	712, 1069
MalI	GATC	6 cut(s)	267, 593, 762, 801, 1255, 1525
MboI	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
MflI	RGATCY	2 cut(s)	265, 799
MhlI	GDGCHC	3 cut(s)	45, 259, 639
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	7 cut(s)	118, 393, 457, 537, 811, 834, 1338
MluNI	TGGCCA	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	645
Mph1103I	ATGCAT	2 cut(s)	417, 1381
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	6 cut(s)	384, 456, 540, 788, 833, 1434
MslI	CAYNNNNRTG	3 cut(s)	491, 1100, 1542
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	4 cut(s)	259, 315, 1242, 1345
MspR9I	CCNGG	3 cut(s)	259, 260, 446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	2 cut(s)	29, 135
MwoI	GCNNNNNNNGC	4 cut(s)	60, 421, 430, 1325
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	259, 260
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	6 cut(s)	625, 1010, 1375, 1478, 1541, 1575
NlaIV	GGNNCC	3 cut(s)	257, 677, 1349
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	712, 1069
NruI	TCGCGA	1 cut(s)	135
NsiI	ATGCAT	2 cut(s)	417, 1381
NspV	TTCGAA	1 cut(s)	885
PagI	TCATGA	2 cut(s)	621, 1571
PceI	AGGCCT	1 cut(s)	1132
PciSI	GCTCTTC	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	126, 320, 794
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	31, 53
PpuMI	RGGWCCY	1 cut(s)	676
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	3 cut(s)	257, 677, 1349
PspOMI	GGGCCC	1 cut(s)	255
PspPI	GGNCC	8 cut(s)	31, 255, 256, 271, 442, 676, 902, 1347
PspPPI	RGGWCCY	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	265, 799
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	289
RruI	TCGCGA	1 cut(s)	135
RseI	CAYNNNNRTG	3 cut(s)	491, 1100, 1542
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	6 cut(s)	384, 456, 540, 788, 833, 1434
SatI	GCNGC	2 cut(s)	30, 52
Sau3AI	GATC	6 cut(s)	265, 591, 760, 799, 1253, 1523
Sau96I	GGNCC	8 cut(s)	31, 255, 256, 271, 442, 676, 902, 1347
ScrFI	CCNGG	3 cut(s)	259, 260, 446
SduI	GDGCHC	3 cut(s)	45, 259, 639
SfaNI	GCATC	5 cut(s)	50, 424, 741, 1239, 1388
SfcI	CTRYAG	1 cut(s)	1257
SfuI	TTCGAA	1 cut(s)	885
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	676, 1347
SmaI	CCCGGG	1 cut(s)	260
SmiMI	CAYNNNNRTG	3 cut(s)	491, 1100, 1542
SmlI	CTYRAG	5 cut(s)	205, 275, 560, 680, 1167
SmoI	CTYRAG	5 cut(s)	205, 275, 560, 680, 1167
Sse9I	AATT	7 cut(s)	118, 393, 457, 537, 811, 834, 1338
SseBI	AGGCCT	1 cut(s)	1132
SsiI	CCGC	6 cut(s)	29, 52, 296, 476, 589, 1444
SspMI	CTAG	4 cut(s)	755, 1298, 1329, 1485
SstI	GAGCTC	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	1132
StyD4I	CCNGG	3 cut(s)	257, 258, 444
StyI	CCWWGG	3 cut(s)	513, 1133, 1414
TaaI	ACNGT	2 cut(s)	693, 1361
TaiI	ACGT	2 cut(s)	141, 989
TaqI	TCGA	4 cut(s)	570, 745, 885, 943
TasI	AATT	7 cut(s)	118, 393, 457, 537, 811, 834, 1338
TauI	GCSGC	2 cut(s)	32, 54
TfiI	GAWTC	3 cut(s)	126, 320, 794
Tru1I	TTAA	6 cut(s)	384, 456, 540, 788, 833, 1434
Tru9I	TTAA	6 cut(s)	384, 456, 540, 788, 833, 1434
TscAI	CASTG	2 cut(s)	1104, 1364
TseFI	GTSAC	2 cut(s)	712, 1069
Tsp45I	GTSAC	2 cut(s)	712, 1069
TspDTI	ATGAA	6 cut(s)	17, 588, 908, 1118, 1221, 1560
TspGWI	ACGGA	1 cut(s)	724
TspMI	CCCGGG	1 cut(s)	258
TspRI	CASTG	2 cut(s)	1104, 1364
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	676, 1347
XagI	CCTNNNNNAGG	1 cut(s)	813
XapI	RAATTY	1 cut(s)	1338
XmaI	CCCGGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	4 cut(s)	755, 1298, 1329, 1485
ZraI	GACGTC	1 cut(s)	139
Zsp2I	ATGCAT	2 cut(s)	417, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.