Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005481

Physical Location & Seq

Genomic Coordinates Forward (+)

41366556 .. 41369740

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1295900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGAAGTCAATAAATGAGGCTTTTGAGCGCAAAACTGCTATACATACTGCAGGTGTGATGCGATGTATACTTTCAAGTTATTTCAAATGCAATGAAGTGGATAGACTTGAAAGTTTTGGGAAGCGTGCAGAATTTGCCAGGTGGAGAACTTGCAGGTCCCTATATCATTGTAAGATGGCCATGTATGCATCACAAAAGCGCTTAAAGGAAATGGAGAGTGTGCTTATTCAGATGGAGAATTTTAAAATTGCATGTACCAAAAAAATATTTGTGATATTGTACAAAGCCTACTTAATGTGTGATCAAAGATATAAGGTGGCACAAGTATTAGGATTAATGTGGAAGCATGGATATGAAATTCCTTTGGATTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

127

Amino Acids

14.91

Weight (kDa)

9.37

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30780 AT2G30780
fragaria_vesca	FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360 FvH4_2g24360
malus_domestica	MD03G1273200.v1.1 MD11G1295800.v1.1 MD11G1295900.v1.1
prunus_persica	Prupe.8G249700_v2.0.a1 Prupe.8G249700_v2.0.a1
pyrus_communis	pycom03g21770 pycom11g26040
rosa_chinensis	RchiOBHm_Chr6g0292231
rosa_laevigata	RLG00000012051
rosa_multiflora	Rmu_sc0002993.1_g000008 Rmu_sc0015871.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175320
rosa_rugosa	Rorug06G0224500 Rorug06G0224600 Rorug06G0224700
rosa_samantha	Rh6AG337700 Rh6BG345000 Rh6CG352100 Rh6DG338000
rosa_wichuraiana	Rw6G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	2 cut(s)	44, 147
AccI	GTMKAC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	134, 241, 360
AfaI	GTAC	2 cut(s)	259, 284
AfeI	AGCGCT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	78, 88, 113
AjnI	CCWGG	1 cut(s)	140
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	1 cut(s)	180
ApoI	RAATTY	3 cut(s)	134, 241, 360
AseI	ATTAAT	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	33, 204
AspS9I	GGNCC	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	182
BccI	CCATC	2 cut(s)	172, 229
BciT130I	CCWGG	1 cut(s)	142
BclI	TGATCA	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	205
BfuAI	ACCTGC	2 cut(s)	44, 147
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	51, 200
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	2 cut(s)	44, 147
BsrDI	GCAATG	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	282
BssMI	GATC	1 cut(s)	304
BssNAI	GTATAC	1 cut(s)	71
Bst1107I	GTATAC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	33, 204
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 188
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	51
BstZ17I	GTATAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	79
BveI	ACCTGC	2 cut(s)	44, 147
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	33, 204
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	258, 283
CviAII	CATG	3 cut(s)	184, 255, 350
CviJI	RGCY	3 cut(s)	23, 182, 290
CviKI_1	RGCY	3 cut(s)	23, 182, 290
CviQI	GTAC	2 cut(s)	258, 283
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraI	TTTAAA	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	3 cut(s)	187, 258, 353
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	3 cut(s)	183, 254, 349
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	70
GlaI	GCGC	2 cut(s)	32, 203
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	33, 204
Hin1II	CATG	3 cut(s)	187, 258, 353
Hin6I	GCGC	2 cut(s)	31, 202
HinP1I	GCGC	2 cut(s)	31, 202
HinfI	GANTC	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	1 cut(s)	71
HpyCH4V	TGCA	6 cut(s)	53, 93, 131, 156, 191, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 188
Hsp92II	CATG	3 cut(s)	187, 258, 353
HspAI	GCGC	2 cut(s)	31, 202
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	304
LpnPI	CCDG	4 cut(s)	39, 127, 142, 154
LweI	GCATC	2 cut(s)	51, 200
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	134, 241, 249, 360
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	4 cut(s)	206, 246, 296, 338
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	137, 188
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	187, 258, 353
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	258
PaqCI	CACCTGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	371
PpuMI	RGGWCCY	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	259, 284
RsaNI	GTAC	2 cut(s)	258, 283
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	206, 246, 296, 338
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	4 cut(s)	58, 146, 161, 321
SfaNI	GCATC	2 cut(s)	51, 200
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	4 cut(s)	134, 241, 249, 360
SspI	AATATT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	140
TasI	AATT	4 cut(s)	134, 241, 249, 360
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	206, 246, 296, 338
Tru9I	TTAA	4 cut(s)	206, 246, 296, 338
TspDTI	ATGAA	3 cut(s)	111, 363, 372
VpaK11BI	GGWCC	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	338
XapI	RAATTY	3 cut(s)	134, 241, 360
XceI	RCATGY	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.