AT2G31040

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010298
Physical Location & Seq
Reverse (-)
13208624 .. 13211188
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31040.1

Sequence Viewer

Length: 1053 bp
ATGGCGATTCTTAGTTACATCTCAGCAACATCAACCACACCACCAATTCCTCAAGATCAATCTCCCAATTCTCGTCTACCAACCAAAATCATTCTACCCAATAAGAAACCTGAGAAATGGTCCACCGGAGTTGCTCCCGGAGAGTACGGTGGTCCTCCGACTACCACCAAGCTCCGAAAGTACTGGGGAGGTGAAAAAGAAGATCCCATTACTTCCACAGACTTAATCTGGAACAGAGATTTTATGGATCAAATGAAGAAATTGTTTGATGATCCTAATGATTCTTCTCTCGACCCATCTCCTTCAAAGGAAAAGTCTTCTGGGTTTCTGAGCTTTAGCAGAGTTATGAGTCTTGACAGTATGGATGTTGATTTAAGTAAAGAGCTTGCATCGTCTTCTAAATCCGTTGTGAAAAATCGTCTTGACACCTCCAAGTCAGAAGCTAAAAAGCAAATGAGTAAGGCTATTGTGTCTCCTAAATGGAAGCTGGCACCTACACGTCGTGAGCAAGAGAAATGGGATAGAGCAACGAAGGCTGCAACTGGTGGCAGTGATGTGATGTTTAGGGAGCTGAGACGGCCACGTGGTGACCCAGAAGTACAAGCTGCTAAAGACAGGGAACAATATTTTAAGCTGAAAAATAAGATTCAGGTTCTCACACTCGGTATTGGTGGTGTTGGTTTAGTCTCAGCTTATATCTCATACACCCCAGAGATAGCACTTAGTTTTGGTGCTGGCTTGTTGGGTTCACTTGCATATATGAGGATGCTTGGTAACTCTGTAGATGCCATGGCAGATGGAGCCAGAGGAGTTGCCAAAGGTGCAGCTAACCAGCCACGGTTACTAGTCCCCGTTGTGTTGGTTATGATATTCAATAGATGGAACGCAATACTTGTTCCTGAGTATGGATTCATGCATTTGGAGTTGATACCAATGTTGGTTGGGTTCTTTACTTACAAAATTGCTACGTTCTTTCAAGCTATAGAAGAAGCCATCTCCATTACTACTCAAAAACCCGAATCAATCTCTCCAGACACACAGGCCAGTGATTAA

Protein Analysis

350

Amino Acids

38.61

Weight (kDa)

9.27

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 197 - 329 8e-72 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 76
AclWI GGATC 3 cut(s) 197, 255, 266
AcoI YGGCCR 1 cut(s) 578
AcvI CACGTG 1 cut(s) 584
AdeI CACNNNGTG 2 cut(s) 503, 587
AfaI GTAC 3 cut(s) 146, 182, 600
AfiI CCNNNNNNNGG 1 cut(s) 905
AflIII ACRYGT 1 cut(s) 497
AgsI TTSAA 3 cut(s) 306, 874, 977
AhlI ACTAGT 1 cut(s) 844
AjiI CACGTC 1 cut(s) 500
Alw26I GTCTC 3 cut(s) 477, 568, 691
AlwI GGATC 3 cut(s) 197, 255, 266
AoxI GGCC 2 cut(s) 578, 1041
ApeKI GCWGC 3 cut(s) 536, 605, 824
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 2 cut(s) 120, 152
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 203, 599
AvaII GGWCC 2 cut(s) 120, 152
BaeI ACNNNNGTAYC 2 cut(s) 920, 953
BanI GGYRCC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 584
BbsI GAAGAC 2 cut(s) 309, 387
BbvI GCAGC 3 cut(s) 523, 592, 836
BccI CCATC 4 cut(s) 304, 791, 873, 1001
BceAI ACGGC 1 cut(s) 593
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 477, 568, 691
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 1 cut(s) 845
BfmI CTRYAG 2 cut(s) 780, 981
BisI GCNGC 3 cut(s) 537, 606, 825
BlsI GCNGC 3 cut(s) 538, 607, 826
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 2 cut(s) 120, 152
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 2 cut(s) 120, 152
BmiI GGNNCC 2 cut(s) 492, 802
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 3 cut(s) 398, 756, 775
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 2 cut(s) 309, 387
BpmI CTGGAG 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 789, 836
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 905
Bse1I ACTGG 3 cut(s) 188, 547, 1044
BseDI CCNNGG 2 cut(s) 789, 836
BseGI GGATG 2 cut(s) 370, 771
BseLI CCNNNNNNNGG 1 cut(s) 905
BseMII CTCAG 6 cut(s) 36, 102, 320, 563, 702, 891
BseNI ACTGG 3 cut(s) 188, 547, 1044
BseRI GAGGAG 1 cut(s) 822
BseXI GCAGC 3 cut(s) 523, 592, 836
BsgI GTGCAG 1 cut(s) 843
BshFI GGCC 2 cut(s) 580, 1043
BshNI GGYRCC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 126, 138
BslFI GGGAC 1 cut(s) 833
BslI CCNNNNNNNGG 1 cut(s) 905
BsmAI GTCTC 3 cut(s) 477, 568, 691
BsmBI CGTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 833
BsnI GGCC 2 cut(s) 580, 1043
Bsp143I GATC 4 cut(s) 55, 202, 247, 271
Bsp19I CCATGG 1 cut(s) 789
BspANI GGCC 2 cut(s) 580, 1043
BspCNI CTCAG 6 cut(s) 35, 103, 321, 564, 701, 892
BspLI GGNNCC 2 cut(s) 492, 802
BspPI GGATC 3 cut(s) 197, 255, 266
BspT107I GGYRCC 1 cut(s) 490
BsrI ACTGG 3 cut(s) 188, 547, 1044
BssECI CCNNGG 2 cut(s) 789, 836
BssMI GATC 4 cut(s) 55, 202, 247, 271
BssT1I CCWWGG 1 cut(s) 789
Bst4CI ACNGT 3 cut(s) 149, 359, 840
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 387, 489, 736
BstDEI CTNAG 8 cut(s) 11, 22, 111, 329, 572, 688, 722, 900
BstDSI CCRYGG 2 cut(s) 789, 836
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 2 cut(s) 370, 771
BstKTI GATC 4 cut(s) 58, 205, 250, 274
BstMAI GTCTC 3 cut(s) 477, 568, 691
BstMBI GATC 4 cut(s) 55, 202, 247, 271
BstMWI GCNNNNNNNGC 4 cut(s) 533, 577, 800, 821
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 2 cut(s) 780, 981
BstV1I GCAGC 3 cut(s) 523, 592, 836
BstV2I GAAGAC 2 cut(s) 309, 387
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 2 cut(s) 580, 1043
BtgI CCRYGG 2 cut(s) 789, 836
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 2 cut(s) 370, 771
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 556, 1051
Cac8I GCNNGC 3 cut(s) 387, 489, 736
Cfr13I GGNCC 2 cut(s) 120, 152
Csp6I GTAC 3 cut(s) 145, 181, 599
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 2 cut(s) 790, 913
CviQI GTAC 3 cut(s) 145, 181, 599
DdeI CTNAG 8 cut(s) 11, 22, 111, 329, 572, 688, 722, 900
DpnI GATC 4 cut(s) 57, 204, 249, 273
DpnII GATC 4 cut(s) 55, 202, 247, 271
DraIII CACNNNGTG 2 cut(s) 503, 587
EaeI YGGCCR 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 120, 152
Eco72I CACGTG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 918
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 568
FaeI CATG 2 cut(s) 793, 916
FaqI GGGAC 1 cut(s) 833
FatI CATG 2 cut(s) 789, 912
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 537, 606, 825
FokI GGATG 2 cut(s) 377, 778
Fsp4HI GCNGC 3 cut(s) 537, 606, 825
FspBI CTAG 1 cut(s) 845
GluI GCNGC 3 cut(s) 537, 606, 825
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 2 cut(s) 580, 1043
HapII CCGG 2 cut(s) 126, 138
Hin1II CATG 2 cut(s) 793, 916
HinfI GANTC 6 cut(s) 7, 281, 349, 646, 909, 1019
HpaII CCGG 2 cut(s) 126, 138
HphI GGTGA 2 cut(s) 203, 599
Hpy166II GTNNAC 3 cut(s) 77, 123, 749
Hpy188I TCNGA 4 cut(s) 159, 176, 330, 439
Hpy188III TCNNGA 8 cut(s) 53, 229, 290, 353, 422, 503, 899, 1031
Hpy8I GTNNAC 3 cut(s) 77, 123, 749
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 312, 526
HpyCH4III ACNGT 3 cut(s) 149, 359, 840
HpyCH4IV ACGT 3 cut(s) 499, 583, 968
HpyCH4V TGCA 5 cut(s) 389, 539, 755, 824, 916
HpyF10VI GCNNNNNNNGC 4 cut(s) 533, 577, 800, 821
HpyF3I CTNAG 8 cut(s) 11, 22, 111, 329, 572, 688, 722, 900
HpySE526I ACGT 3 cut(s) 499, 583, 968
Hsp92II CATG 2 cut(s) 793, 916
Kzo9I GATC 4 cut(s) 55, 202, 247, 271
LmnI GCTCC 4 cut(s) 139, 177, 568, 800
Lsp1109I GCAGC 3 cut(s) 523, 592, 836
LweI GCATC 3 cut(s) 398, 756, 775
MaeI CTAG 1 cut(s) 845
MaeII ACGT 3 cut(s) 499, 583, 968
MaeIII GTNAC 4 cut(s) 14, 587, 773, 840
MalI GATC 4 cut(s) 57, 204, 249, 273
MboI GATC 4 cut(s) 55, 202, 247, 271
MboII GAAGA 6 cut(s) 212, 268, 276, 309, 387, 998
MflI RGATCY 1 cut(s) 202
MluCI AATT 4 cut(s) 45, 67, 260, 960
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 6 cut(s) 60, 165, 182, 439, 756, 800
Mph1103I ATGCAT 1 cut(s) 918
MseI TTAA 4 cut(s) 224, 374, 630, 1051
MspI CCGG 2 cut(s) 126, 138
MspR9I CCNGG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 533, 577, 800, 821
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 789
NdeII GATC 4 cut(s) 55, 202, 247, 271
NlaIII CATG 2 cut(s) 793, 916
NlaIV GGNNCC 2 cut(s) 492, 802
NmuCI GTSAC 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 918
PfeI GAWTC 5 cut(s) 7, 281, 646, 909, 1019
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 3 cut(s) 538, 607, 826
PleI GAGTC 1 cut(s) 357
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 584
PspCI CACGTG 1 cut(s) 584
PspEI GGTNACC 1 cut(s) 587
PspN4I GGNNCC 2 cut(s) 492, 802
PspPI GGNCC 2 cut(s) 120, 152
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 3 cut(s) 146, 182, 600
RsaNI GTAC 3 cut(s) 145, 181, 599
SaqAI TTAA 4 cut(s) 224, 374, 630, 1051
SatI GCNGC 3 cut(s) 537, 606, 825
Sau3AI GATC 4 cut(s) 55, 202, 247, 271
Sau96I GGNCC 2 cut(s) 120, 152
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 138
SfaNI GCATC 3 cut(s) 398, 756, 775
SfcI CTRYAG 2 cut(s) 780, 981
SinI GGWCC 2 cut(s) 120, 152
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 4 cut(s) 45, 67, 260, 960
SspI AATATT 1 cut(s) 626
SspMI CTAG 1 cut(s) 845
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 149, 359, 840
TaiI ACGT 3 cut(s) 502, 586, 971
TaqI TCGA 1 cut(s) 291
TasI AATT 4 cut(s) 45, 67, 260, 960
TatI WGTACW 2 cut(s) 180, 598
TfiI GAWTC 5 cut(s) 7, 281, 646, 909, 1019
Tru1I TTAA 4 cut(s) 224, 374, 630, 1051
Tru9I TTAA 4 cut(s) 224, 374, 630, 1051
TscAI CASTG 2 cut(s) 556, 1051
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 3 cut(s) 536, 605, 824
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 2 cut(s) 269, 901
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 556, 1051
VpaK11BI GGWCC 2 cut(s) 120, 152
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 1 cut(s) 845
ZrmI AGTACT 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.