Rh2AG339400

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010298
Physical Location & Seq
Forward (+)
49288007 .. 49294910
6904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG339400.1

Sequence Viewer

Length: 864 bp
ATGGCAATTCTGAACTACTATCTCTCAGTGACCTCCACAGCAACACCCATTTCTCCGGACTCATCATCATCATCAGCAAGCCAACCCGTGCCCGACCCGAGACAGAGCAAGATCCTACTGCCCAAGAAGAAGCCCCAGAAATGGTCCACTGGGATGGCTCCCGGCGAGTACGGTGGCCCACCAACCACCACGAAGCTCCGCAAGTACTGGGGAGGCGATGTGGACCCTCTTGAATCCGATGACTTCATGTGGAACAAAGAATTCGTGGACCGCATGAAGAAACTCATTCAGGGCCCTGATGACACTTCCACCCAAGTTGCTCCTGCCAAGGAAGTGCCTTCTGGGTTTCTTAGCTTGAATAGGGTCATGAGTCTCGACAGTCTAGAAGTTGATTTGAGCAAACAACTCACAGCTTCTCCTGCCCAGCCTGAGTTACAACAGCATGTTGAGGCTACACCGCAAAGTTTGAAAAACACTGCTATTAAATGGAGACATGCACCAACACGACGTGAGCAAGATAAATGGGCCAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAAGCAAGGCGCTCAAAGGAGGACCCGAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTCAAGTTAAAGAAGAGATTGCAAGTACTTACACTGGGTATAGGAGGTGTTGGATTAGTTTCAGCTTATGTTTCATATTCCCCTGAAATTGCAGCTAGGTATGTCCAAATCCGGGTTTGTTCTCTAATGTATACGAAATCTGAAAGTATCAATTATACACCCACTAGTTTCTGTATCTCTGGTGGGTCAGTTTCGTTTTTCACTTGCCATTCTTGCCAGAAAATAGTGTAA

Protein Analysis

287

Amino Acids

31.88

Weight (kDa)

9.47

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 199 - 257 3.1e-18 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 764
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 199, 271, 458
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 3 cut(s) 170, 206, 660
AfiI CCNNNNNNNGG 2 cut(s) 141, 745
AgsI TTSAA 4 cut(s) 233, 358, 469, 637
AhlI ACTAGT 1 cut(s) 797
AjiI CACGTC 1 cut(s) 509
AluBI AGCT 6 cut(s) 196, 354, 413, 611, 698, 728
AluI AGCT 6 cut(s) 196, 354, 413, 611, 698, 728
Alw26I GTCTC 3 cut(s) 94, 377, 484
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 175, 292, 525
ApaI GGGCCC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 542, 725
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 525, 595
AsuC2I CCSGG 2 cut(s) 162, 746
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 4 cut(s) 144, 223, 268, 595
BaeGI GKGCMC 2 cut(s) 93, 296
BanII GRGCYC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 529, 737
BccI CCATC 1 cut(s) 148
BcnI CCSGG 2 cut(s) 162, 746
BcoDI GTCTC 3 cut(s) 94, 377, 484
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 3 cut(s) 383, 729, 798
BfoI RGCGCY 1 cut(s) 586
BisI GCNGC 2 cut(s) 543, 726
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 2 cut(s) 544, 727
BmcAI AGTACT 2 cut(s) 206, 660
Bme1390I CCNGG 2 cut(s) 162, 746
Bme18I GGWCC 4 cut(s) 144, 223, 268, 595
BmeT110I CYCGRG 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 509
BmgT120I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 525, 595
BmiI GGNNCC 4 cut(s) 159, 225, 294, 597
BmrFI CCNGG 2 cut(s) 162, 746
BmrI ACTGGG 3 cut(s) 159, 217, 677
BmuI ACTGGG 3 cut(s) 159, 217, 677
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 162, 746
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 204, 234, 400, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 745
Bse1I ACTGG 4 cut(s) 154, 212, 553, 672
BseAI TCCGGA 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 141, 745
BseMII CTCAG 3 cut(s) 39, 420, 603
BseNI ACTGG 4 cut(s) 154, 212, 553, 672
BseSI GKGCMC 2 cut(s) 93, 296
BseXI GCAGC 2 cut(s) 529, 737
BseYI CCCAGC 1 cut(s) 423
BshFI GGCC 3 cut(s) 177, 294, 527
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 3 cut(s) 56, 162, 745
BslI CCNNNNNNNGG 2 cut(s) 141, 745
BsmAI GTCTC 3 cut(s) 94, 377, 484
BsnI GGCC 3 cut(s) 177, 294, 527
BsoBI CYCGRG 1 cut(s) 97
Bsp120I GGGCCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 93, 296
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 111
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 3 cut(s) 199, 271, 458
BspANI GGCC 3 cut(s) 177, 294, 527
BspCNI CTCAG 3 cut(s) 38, 421, 604
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 4 cut(s) 159, 225, 294, 597
BspPI GGATC 1 cut(s) 106
BsrI ACTGG 4 cut(s) 154, 212, 553, 672
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 111
BssNAI GTATAC 1 cut(s) 765
BssT1I CCWWGG 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 765
Bst4CI ACNGT 2 cut(s) 173, 380
Bst6I CTCTTC 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 5 cut(s) 25, 350, 429, 537, 612
BstF5I GGATG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 3 cut(s) 94, 377, 484
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 419, 539, 846
BstNSI RCATGY 2 cut(s) 446, 497
BstSCI CCNGG 2 cut(s) 160, 744
BstSLI GKGCMC 2 cut(s) 93, 296
BstV1I GCAGC 2 cut(s) 529, 737
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 765
BsuRI GGCC 3 cut(s) 177, 294, 527
BtgZI GCGATG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 509
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 2 cut(s) 474, 562
BtsIMutI CAGTG 5 cut(s) 33, 147, 474, 562, 665
Cac8I GCNNGC 1 cut(s) 79
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 525, 595
Csp6I GTAC 3 cut(s) 169, 205, 659
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 5 cut(s) 247, 274, 367, 443, 494
CviQI GTAC 3 cut(s) 169, 205, 659
DdeI CTNAG 5 cut(s) 25, 350, 429, 537, 612
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DraIII CACNNNGTG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 4 cut(s) 144, 223, 268, 595
Eco88I CYCGRG 1 cut(s) 97
EcoO109I RGGNCCY 3 cut(s) 292, 293, 595
EcoRI GAATTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 5 cut(s) 250, 277, 370, 446, 497
FatI CATG 5 cut(s) 246, 273, 366, 442, 493
FblI GTMKAC 1 cut(s) 764
Fnu4HI GCNGC 2 cut(s) 543, 726
FokI GGATG 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 543, 726
FspBI CTAG 3 cut(s) 383, 729, 798
GlaI GCGC 1 cut(s) 584
GluI GCNGC 2 cut(s) 543, 726
GsaI CCCAGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 586
HaeIII GGCC 3 cut(s) 177, 294, 527
HapII CCGG 3 cut(s) 56, 162, 745
HhaI GCGC 1 cut(s) 585
Hin1II CATG 5 cut(s) 250, 277, 370, 446, 497
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HinfI GANTC 3 cut(s) 59, 233, 370
HpaII CCGG 3 cut(s) 56, 162, 745
Hpy166II GTNNAC 4 cut(s) 147, 223, 268, 765
Hpy188I TCNGA 3 cut(s) 12, 238, 775
Hpy188III TCNNGA 6 cut(s) 56, 230, 367, 374, 383, 572
Hpy8I GTNNAC 4 cut(s) 147, 223, 268, 765
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 2 cut(s) 173, 380
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 4 cut(s) 497, 545, 655, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 539, 846
HpyF3I CTNAG 5 cut(s) 25, 350, 429, 537, 612
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 5 cut(s) 250, 277, 370, 446, 497
HspAI GCGC 1 cut(s) 583
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 3 cut(s) 163, 201, 325
Lsp1109I GCAGC 2 cut(s) 529, 737
MaeI CTAG 3 cut(s) 383, 729, 798
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 28, 432
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 3 cut(s) 139, 289, 658
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 2 cut(s) 93, 296
MluCI AATT 4 cut(s) 6, 260, 720, 784
MlyI GAGTC 2 cut(s) 53, 379
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 7 cut(s) 43, 206, 237, 442, 545, 586, 671
MroI TCCGGA 1 cut(s) 55
MseI TTAA 2 cut(s) 483, 641
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 3 cut(s) 56, 162, 745
MspR9I CCNGG 2 cut(s) 162, 746
MwoI GCNNNNNNNGC 3 cut(s) 419, 539, 846
NciI CCSGG 2 cut(s) 162, 746
NdeII GATC 1 cut(s) 111
NlaIII CATG 5 cut(s) 250, 277, 370, 446, 497
NlaIV GGNNCC 4 cut(s) 159, 225, 294, 597
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 2 cut(s) 446, 497
PagI TCATGA 1 cut(s) 366
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 544, 727
PleI GAGTC 2 cut(s) 53, 378
PpsI GAGTC 2 cut(s) 53, 378
PpuMI RGGWCCY 1 cut(s) 595
Psp5II RGGWCCY 1 cut(s) 595
PspFI CCCAGC 1 cut(s) 423
PspN4I GGNNCC 4 cut(s) 159, 225, 294, 597
PspOMI GGGCCC 1 cut(s) 292
PspPI GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 525, 595
PspPPI RGGWCCY 1 cut(s) 595
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 3 cut(s) 170, 206, 660
RsaNI GTAC 3 cut(s) 169, 205, 659
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 483, 641
SatI GCNGC 2 cut(s) 543, 726
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 525, 595
ScaI AGTACT 2 cut(s) 206, 660
SchI GAGTC 2 cut(s) 53, 379
ScrFI CCNGG 2 cut(s) 162, 746
SduI GDGCHC 2 cut(s) 93, 296
SinI GGWCC 4 cut(s) 144, 223, 268, 595
SmiMI CAYNNNNRTG 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 797
Sse9I AATT 4 cut(s) 6, 260, 720, 784
SsiI CCGC 3 cut(s) 199, 271, 458
SspMI CTAG 3 cut(s) 383, 729, 798
StyD4I CCNGG 2 cut(s) 160, 744
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 173, 380
TaiI ACGT 1 cut(s) 511
TaqI TCGA 1 cut(s) 375
TasI AATT 4 cut(s) 6, 260, 720, 784
TatI WGTACW 2 cut(s) 204, 658
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 483, 641
Tru9I TTAA 2 cut(s) 483, 641
TscAI CASTG 5 cut(s) 33, 154, 481, 562, 672
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 542, 725
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 235, 290, 696
TspRI CASTG 5 cut(s) 33, 154, 481, 562, 672
VpaK11BI GGWCC 4 cut(s) 144, 223, 268, 595
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 2 cut(s) 446, 497
XmiI GTMKAC 1 cut(s) 764
XspI CTAG 3 cut(s) 383, 729, 798
ZrmI AGTACT 2 cut(s) 206, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.