MD17G1230900.v1.1

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010298
Physical Location & Seq
Forward (+)
27933000 .. 27936633
3634 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1230900.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGCGATTCTCAACTCTTATCTCTCAGTGACGTCCACGGCCACACCCATCTCCCCAGACTCAGCAACTCCACCGGTACCCGACCCGAGACAGACCAAGATCCTATTGCCCAAGAAGAAGCCCGTGAAATGGTCCACCGGGGTTGCTCCCGGCGATTACGGCGGACCTCCCACCACCACCAAGCTCCGCAAGTACTGGGGCGGCGAGGATGACCCTCTAACCTCTGACGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGAGCCCAACTCTTCCACTCAATCCACTCCCGTCAAGGAAAAGCCTTCCGGGTTTCTCAGCTTGAATAGAGTCATGGGCCTTGACAGTTTAGAAGTTGATTTGAGCAAACAGCTCACCGCTGCTCCTGCCCAACCCAAGTTAGAGGCGCCAGTTGAGGCGCCGGCGAAAAGTGCCAGCAGTACTGCTATCAAATGGAAATTGGCACCAACACGGCGTGAGCAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGTTCTCGGGAGGACCCAAAAGTAGTGGCTGAGCAGTATAGGAAGCAGTATTTTAGGTTAAAGAAGAGGTTGCAATTCCTTACGCTGGGTATAGGCGGTGTTGGATTAGTCTCGGCTTATGTTTCATATTCCCCTGAAATTACGGCTAGCTACGGTGTTGGGTTGCTTGGTTCTATAGCTTATATGCGTATGCTGGGGAGTAGCGTGGATTCCATGGCAGATGGAGCAAGGGGACTTCTCAAGGGAGCGATTGGGCAACCCAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACAGATGGAATGCGATCGTCGTTCCAGAATATGGGTTTATGCACCTGGAATTGATACCAATGCTGGTGGGATTCTTCACATACAAGATTGCTACTTTCATCCAAGCTATAGAGGAAGCACTTCCCGCAGTTGAGAAAGAGACGTAA

Protein Analysis

337

Amino Acids

37.06

Weight (kDa)

9.52

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 194 - 326 3.5e-72 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 4 cut(s) 76, 424, 436, 481
AccB7I CCANNNNNTGG 1 cut(s) 896
AciI CCGC 7 cut(s) 162, 187, 201, 259, 396, 663, 990
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 3 cut(s) 32, 425, 437
AdeI CACNNNGTG 1 cut(s) 494
AfaI GTAC 3 cut(s) 78, 194, 460
AfiI CCNNNNNNNGG 3 cut(s) 129, 652, 896
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 2 cut(s) 827, 909
AluBI AGCT 6 cut(s) 184, 339, 391, 717, 746, 971
AluI AGCT 6 cut(s) 184, 339, 391, 717, 746, 971
Alw26I GTCTC 3 cut(s) 82, 682, 998
AlwI GGATC 1 cut(s) 94
Ama87I CYCGRG 2 cut(s) 85, 573
AoxI GGCC 2 cut(s) 39, 355
ApeKI GCWGC 2 cut(s) 398, 527
ApoI RAATTY 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 984
Asp718I GGTACC 1 cut(s) 76
AspLEI GCGC 2 cut(s) 427, 439
AspS9I GGNCC 5 cut(s) 132, 164, 256, 355, 580
AsuC2I CCSGG 3 cut(s) 139, 150, 328
AsuHPI GGTGA 1 cut(s) 385
AsuNHI GCTAGC 1 cut(s) 713
AvaI CYCGRG 2 cut(s) 85, 573
AvaII GGWCC 4 cut(s) 132, 164, 256, 580
BanI GGYRCC 4 cut(s) 76, 424, 436, 481
BanII GRGCYC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 385, 514
BccI CCATC 3 cut(s) 56, 782, 864
BceAI ACGGC 4 cut(s) 54, 175, 506, 726
BciT130I CCWGG 2 cut(s) 829, 911
BcnI CCSGG 3 cut(s) 139, 150, 328
BcoDI GTCTC 3 cut(s) 82, 682, 998
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 2 cut(s) 741, 972
BfoI RGCGCY 2 cut(s) 428, 440
BisI GCNGC 3 cut(s) 202, 399, 528
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 3 cut(s) 203, 400, 529
BmcAI AGTACT 2 cut(s) 194, 460
Bme1390I CCNGG 5 cut(s) 139, 150, 328, 829, 911
Bme18I GGWCC 4 cut(s) 132, 164, 256, 580
BmeT110I CYCGRG 2 cut(s) 85, 573
BmgT120I GGNCC 5 cut(s) 132, 164, 256, 355, 580
BmiI GGNNCC 7 cut(s) 78, 282, 426, 438, 483, 582, 840
BmrFI CCNGG 5 cut(s) 139, 150, 328, 829, 911
BmrI ACTGGG 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 791
BpuMI CCSGG 3 cut(s) 139, 150, 328
BsaHI GRCGYC 3 cut(s) 32, 425, 437
BsaJI CCNNGG 4 cut(s) 36, 138, 780, 827
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 652, 896
Bse118I RCCGGY 2 cut(s) 73, 439
Bse1I ACTGG 3 cut(s) 200, 428, 538
BseBI CCWGG 2 cut(s) 829, 911
BseDI CCNNGG 4 cut(s) 36, 138, 780, 827
BseGI GGATG 2 cut(s) 214, 963
BseLI CCNNNNNNNGG 3 cut(s) 129, 652, 896
BseMII CTCAG 4 cut(s) 39, 75, 349, 588
BseNI ACTGG 3 cut(s) 200, 428, 538
BseXI GCAGC 2 cut(s) 385, 514
BseYI CCCAGC 2 cut(s) 652, 760
Bsh1285I CGRYCG 1 cut(s) 882
BshFI GGCC 2 cut(s) 41, 357
BshNI GGYRCC 4 cut(s) 76, 424, 436, 481
BshTI ACCGGT 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 882
BsiHKCI CYCGRG 2 cut(s) 85, 573
BsiSI CCGG 5 cut(s) 74, 138, 150, 327, 440
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 3 cut(s) 129, 652, 896
BsmAI GTCTC 3 cut(s) 82, 682, 998
BsmBI CGTCTC 1 cut(s) 998
BsmFI GGGAC 1 cut(s) 813
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 2 cut(s) 41, 357
BsoBI CYCGRG 2 cut(s) 85, 573
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 99, 879
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 7 cut(s) 162, 187, 201, 259, 396, 663, 990
BspANI GGCC 2 cut(s) 41, 357
BspCNI CTCAG 4 cut(s) 38, 74, 348, 589
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 7 cut(s) 78, 282, 426, 438, 483, 582, 840
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 4 cut(s) 76, 424, 436, 481
BsrFI RCCGGY 2 cut(s) 73, 439
BsrI ACTGG 3 cut(s) 200, 428, 538
BssAI RCCGGY 2 cut(s) 73, 439
BssECI CCNNGG 4 cut(s) 36, 138, 780, 827
BssMI GATC 2 cut(s) 99, 879
BssNI GRCGYC 3 cut(s) 32, 425, 437
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 829, 911
Bst4CI ACNGT 2 cut(s) 365, 722
Bst6I CTCTTC 2 cut(s) 295, 626
BstACI GRCGYC 3 cut(s) 32, 425, 437
BstC8I GCNNGC 3 cut(s) 441, 454, 715
BstDEI CTNAG 5 cut(s) 25, 61, 335, 522, 597
BstDSI CCRYGG 2 cut(s) 36, 780
BstF5I GGATG 2 cut(s) 214, 963
BstH2I RGCGCY 2 cut(s) 428, 440
BstHHI GCGC 2 cut(s) 427, 439
BstKTI GATC 2 cut(s) 102, 882
BstMAI GTCTC 3 cut(s) 82, 682, 998
BstMBI GATC 2 cut(s) 99, 879
BstMCI CGRYCG 1 cut(s) 882
BstMWI GCNNNNNNNGC 7 cut(s) 159, 404, 449, 524, 791, 829, 989
BstNI CCWGG 2 cut(s) 829, 911
BstSCI CCNGG 5 cut(s) 137, 148, 326, 827, 909
BstSFI CTRYAG 2 cut(s) 741, 972
BstV1I GCAGC 2 cut(s) 385, 514
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 2 cut(s) 41, 357
BtgI CCRYGG 2 cut(s) 36, 780
BtsCI GGATG 2 cut(s) 214, 963
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 33, 547
Cac8I GCNNGC 3 cut(s) 441, 454, 715
CciI TCATGA 1 cut(s) 855
CfoI GCGC 2 cut(s) 427, 439
Cfr10I RCCGGY 2 cut(s) 73, 439
Cfr13I GGNCC 5 cut(s) 132, 164, 256, 355, 580
Csp6I GTAC 3 cut(s) 77, 193, 459
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 8 cut(s) 124, 159, 488, 523, 573, 608, 912, 947
CviAII CATG 5 cut(s) 253, 262, 352, 781, 856
CviQI GTAC 3 cut(s) 77, 193, 459
DdeI CTNAG 5 cut(s) 25, 61, 335, 522, 597
DinI GGCGCC 2 cut(s) 426, 438
DpnI GATC 2 cut(s) 101, 881
DpnII GATC 2 cut(s) 99, 879
DraIII CACNNNGTG 1 cut(s) 494
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 295, 626
EarI CTCTTC 2 cut(s) 295, 626
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 4 cut(s) 132, 164, 256, 580
Eco88I CYCGRG 2 cut(s) 85, 573
EcoO109I RGGNCCY 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 827, 909
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 2 cut(s) 426, 438
EheI GGCGCC 2 cut(s) 426, 438
ErhI CCWWGG 1 cut(s) 780
Esp3I CGTCTC 1 cut(s) 998
FaeI CATG 5 cut(s) 256, 265, 355, 784, 859
FaqI GGGAC 1 cut(s) 813
FatI CATG 5 cut(s) 252, 261, 351, 780, 855
FauI CCCGC 1 cut(s) 997
Fnu4HI GCNGC 3 cut(s) 202, 399, 528
FokI GGATG 2 cut(s) 221, 950
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 3 cut(s) 202, 399, 528
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 426, 438
GluI GCNGC 3 cut(s) 202, 399, 528
GsaI CCCAGC 2 cut(s) 656, 764
GsuI CTGGAG 1 cut(s) 555
HaeII RGCGCY 2 cut(s) 428, 440
HaeIII GGCC 2 cut(s) 41, 357
HapII CCGG 5 cut(s) 74, 138, 150, 327, 440
HhaI GCGC 2 cut(s) 427, 439
Hin1I GRCGYC 3 cut(s) 32, 425, 437
Hin1II CATG 5 cut(s) 256, 265, 355, 784, 859
Hin6I GCGC 2 cut(s) 425, 437
HinP1I GCGC 2 cut(s) 425, 437
HinfI GANTC 5 cut(s) 7, 59, 348, 776, 936
HpaII CCGG 5 cut(s) 74, 138, 150, 327, 440
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 36, 135
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 5 cut(s) 278, 557, 575, 856, 890
Hpy8I GTNNAC 2 cut(s) 36, 135
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 365, 722
HpyCH4IV ACGT 2 cut(s) 32, 1007
HpyCH4V TGCA 3 cut(s) 530, 640, 907
HpyF10VI GCNNNNNNNGC 7 cut(s) 159, 404, 449, 524, 791, 829, 989
HpyF3I CTNAG 5 cut(s) 25, 61, 335, 522, 597
HpySE526I ACGT 2 cut(s) 32, 1007
Hsp92I GRCGYC 3 cut(s) 32, 425, 437
Hsp92II CATG 5 cut(s) 256, 265, 355, 784, 859
HspAI GCGC 2 cut(s) 425, 437
KasI GGCGCC 2 cut(s) 424, 436
KpnI GGTACC 1 cut(s) 80
KroI GCCGGC 1 cut(s) 439
KroNI GCCGGC 1 cut(s) 441
Kzo9I GATC 2 cut(s) 99, 879
LmnI GCTCC 6 cut(s) 151, 189, 280, 406, 791, 812
Lsp1109I GCAGC 2 cut(s) 385, 514
MaeI CTAG 1 cut(s) 714
MaeII ACGT 2 cut(s) 32, 1007
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 101, 881
MboI GATC 2 cut(s) 99, 879
MboII GAAGA 4 cut(s) 127, 282, 643, 931
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 6 cut(s) 248, 476, 560, 641, 705, 914
Mly113I GGCGCC 2 cut(s) 425, 437
MlyI GAGTC 2 cut(s) 53, 357
MmeI TCCRAC 1 cut(s) 649
MreI CGCCGGCG 1 cut(s) 439
MroNI GCCGGC 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 3 cut(s) 563, 626, 864
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 5 cut(s) 74, 138, 150, 327, 440
MspR9I CCNGG 5 cut(s) 139, 150, 328, 829, 911
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 2 cut(s) 829, 911
MwoI GCNNNNNNNGC 7 cut(s) 159, 404, 449, 524, 791, 829, 989
NaeI GCCGGC 1 cut(s) 441
NarI GGCGCC 2 cut(s) 425, 437
NciI CCSGG 3 cut(s) 139, 150, 328
NcoI CCATGG 1 cut(s) 780
NdeII GATC 2 cut(s) 99, 879
NgoMIV GCCGGC 1 cut(s) 439
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 5 cut(s) 256, 265, 355, 784, 859
NlaIV GGNNCC 7 cut(s) 78, 282, 426, 438, 483, 582, 840
NmeAIII GCCGAG 1 cut(s) 659
NmuCI GTSAC 1 cut(s) 28
PagI TCATGA 1 cut(s) 855
PctI GAATGC 1 cut(s) 880
PdiI GCCGGC 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 3 cut(s) 7, 776, 936
PflMI CCANNNNNTGG 1 cut(s) 896
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 3 cut(s) 203, 400, 529
Ple19I CGATCG 1 cut(s) 882
PleI GAGTC 2 cut(s) 53, 356
PluTI GGCGCC 2 cut(s) 428, 440
PpsI GAGTC 2 cut(s) 53, 356
PpuMI RGGWCCY 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 827, 909
PspFI CCCAGC 2 cut(s) 652, 760
PspGI CCWGG 2 cut(s) 827, 909
PspN4I GGNNCC 7 cut(s) 78, 282, 426, 438, 483, 582, 840
PspPI GGNCC 5 cut(s) 132, 164, 256, 355, 580
PspPPI RGGWCCY 1 cut(s) 580
PsuI RGATCY 1 cut(s) 99
PvuI CGATCG 1 cut(s) 882
RsaI GTAC 3 cut(s) 78, 194, 460
RsaNI GTAC 3 cut(s) 77, 193, 459
SaqAI TTAA 3 cut(s) 563, 626, 864
SatI GCNGC 3 cut(s) 202, 399, 528
Sau3AI GATC 2 cut(s) 99, 879
Sau96I GGNCC 5 cut(s) 132, 164, 256, 355, 580
ScaI AGTACT 2 cut(s) 194, 460
SchI GAGTC 2 cut(s) 53, 357
ScrFI CCNGG 5 cut(s) 139, 150, 328, 829, 911
SduI GDGCHC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 741, 972
SfoI GGCGCC 2 cut(s) 426, 438
SgrAI CRCCGGYG 1 cut(s) 439
SinI GGWCC 4 cut(s) 132, 164, 256, 580
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 6 cut(s) 248, 476, 560, 641, 705, 914
SsiI CCGC 7 cut(s) 162, 187, 201, 259, 396, 663, 990
SspDI GGCGCC 2 cut(s) 424, 436
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 5 cut(s) 137, 148, 326, 827, 909
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 365, 722
TaiI ACGT 2 cut(s) 35, 1010
TasI AATT 6 cut(s) 248, 476, 560, 641, 705, 914
TatI WGTACW 2 cut(s) 192, 458
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 3 cut(s) 7, 776, 936
Tru1I TTAA 3 cut(s) 563, 626, 864
Tru9I TTAA 3 cut(s) 563, 626, 864
TscAI CASTG 2 cut(s) 33, 547
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 398, 527
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 223, 241, 278, 681, 952
TspRI CASTG 2 cut(s) 33, 547
Van91I CCANNNNNTGG 1 cut(s) 896
VpaK11BI GGWCC 4 cut(s) 132, 164, 256, 580
XapI RAATTY 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 33
ZrmI AGTACT 2 cut(s) 194, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.