Rh2BG348200

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010298
Physical Location & Seq
Forward (+)
46867120 .. 46872517
5398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG348200.1

Sequence Viewer

Length: 891 bp
ATGGCAATTCTGAACTACTATCTCTCAGTGACCTCCACAGCAACACCCATTTCTCCGGACTCATCATCAGCAAGCCAACCCGTGCCCGACCCGAGACAGAGCAAGATCCTACTGCCCAAGAAGAAGCCCCAGAAATGGTCCACTGGGATGGCTCCCGGCGAGTACGGTGGCCCACCAACCACCACGAAGCTCCGCAAGTACTGGGGAGGCGATGTGGACCCTCTTGAATCCGATGACTTCATGTGGAACAAAGAATTCGTGGACCGCATGAAGAAACTCATTCAGGGCCCTGATGACACTTCCACCCAAGTTGCTCCTGCCAAGGAAGTGCCTTCTGGGTTTCTTAGCTTGAATAGGGTCATGAGTCTCGACAGTCTAGAAGTTGATTTGAGCAAACAACTCACAGCTTCTCCTGCCCAGCCTGAGTTACAACAGCATGTTGAGGCTACACCGCAAAGTTTGAAAAGCACTGCTATTAAATGGAGACATGCACCAACACGACGTGAGCAAGATAAATGGGCCAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAAGCAAGGCGCTCAAAGGAGGACCCGAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTCAAGTTAAAGAAGAGATTGCAAGTACTTACACTGGGTATAGGAGGTGTTGGATTAGTTTCAGCTTATGTTTCATATTCCCCTGAAATTGCAGCGAGCTATGGTGTTGGGTTCCTTGGTTCTCTGGCTTACATGCGTATGCTAGGGACTAGTGTGGATTCCATGGCAGATGGAGCAAGAGGACTTCTCAAGGGAGCAATTGGTCAACCAAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACAGGTGGAATGGGTAA

Protein Analysis

296

Amino Acids

32.56

Weight (kDa)

9.69

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 197 - 296 2.3e-50 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 193, 265, 452
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 3 cut(s) 164, 200, 654
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 4 cut(s) 227, 352, 463, 631
AhlI ACTAGT 1 cut(s) 776
AjiI CACGTC 1 cut(s) 503
AluBI AGCT 6 cut(s) 190, 348, 407, 605, 692, 726
AluI AGCT 6 cut(s) 190, 348, 407, 605, 692, 726
Alw26I GTCTC 3 cut(s) 88, 371, 478
AlwI GGATC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 91
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 169, 286, 519
ApaI GGGCCC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 536, 719
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
AsuC2I CCSGG 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 4 cut(s) 138, 217, 262, 589
BaeGI GKGCMC 2 cut(s) 87, 290
BanII GRGCYC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 523, 731
BccI CCATC 2 cut(s) 142, 791
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 3 cut(s) 88, 371, 478
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 3 cut(s) 377, 770, 777
BfoI RGCGCY 1 cut(s) 580
BisI GCNGC 2 cut(s) 537, 720
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 2 cut(s) 538, 721
BmcAI AGTACT 2 cut(s) 200, 654
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 4 cut(s) 138, 217, 262, 589
BmeT110I CYCGRG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 503
BmgT120I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
BmiI GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
BmrFI CCNGG 1 cut(s) 156
BmrI ACTGGG 3 cut(s) 153, 211, 671
BmuI ACTGGG 3 cut(s) 153, 211, 671
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 4 cut(s) 321, 742, 789, 836
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 198, 228, 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 4 cut(s) 148, 206, 547, 666
BseAI TCCGGA 1 cut(s) 55
BseDI CCNNGG 4 cut(s) 321, 742, 789, 836
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 39, 414, 597
BseNI ACTGG 4 cut(s) 148, 206, 547, 666
BseSI GKGCMC 2 cut(s) 87, 290
BseXI GCAGC 2 cut(s) 523, 731
BseYI CCCAGC 1 cut(s) 417
BshFI GGCC 3 cut(s) 171, 288, 521
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 2 cut(s) 56, 156
BslFI GGGAC 1 cut(s) 787
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 3 cut(s) 88, 371, 478
BsmFI GGGAC 1 cut(s) 787
BsnI GGCC 3 cut(s) 171, 288, 521
BsoBI CYCGRG 1 cut(s) 91
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 87, 290
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 105
Bsp1720I GCTNAGC 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 3 cut(s) 193, 265, 452
BspANI GGCC 3 cut(s) 171, 288, 521
BspCNI CTCAG 3 cut(s) 38, 415, 598
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 2 cut(s) 360, 864
BspLI GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
BspPI GGATC 1 cut(s) 100
BsrI ACTGG 4 cut(s) 148, 206, 547, 666
BssECI CCNNGG 4 cut(s) 321, 742, 789, 836
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 4 cut(s) 321, 742, 789, 836
Bst4CI ACNGT 2 cut(s) 167, 374
Bst6I CTCTTC 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 73, 724
BstDEI CTNAG 5 cut(s) 25, 344, 423, 531, 606
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 3 cut(s) 88, 371, 478
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 3 cut(s) 413, 533, 800
BstNSI RCATGY 3 cut(s) 440, 491, 763
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 2 cut(s) 87, 290
BstV1I GCAGC 2 cut(s) 523, 731
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 3 cut(s) 171, 288, 521
BtgI CCRYGG 1 cut(s) 789
BtgZI GCGATG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 503
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 2 cut(s) 468, 556
BtsIMutI CAGTG 5 cut(s) 33, 141, 468, 556, 659
Cac8I GCNNGC 2 cut(s) 73, 724
CciI TCATGA 2 cut(s) 360, 864
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
Csp6I GTAC 3 cut(s) 163, 199, 653
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 8 cut(s) 241, 268, 361, 437, 488, 760, 790, 865
CviQI GTAC 3 cut(s) 163, 199, 653
DdeI CTNAG 5 cut(s) 25, 344, 423, 531, 606
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraIII CACNNNGTG 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 635
EarI CTCTTC 1 cut(s) 635
Eco130I CCWWGG 4 cut(s) 321, 742, 789, 836
Eco24I GRGCYC 1 cut(s) 290
Eco47I GGWCC 4 cut(s) 138, 217, 262, 589
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 3 cut(s) 286, 287, 589
EcoRI GAATTC 1 cut(s) 254
EcoT14I CCWWGG 4 cut(s) 321, 742, 789, 836
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 4 cut(s) 321, 742, 789, 836
FaeI CATG 8 cut(s) 244, 271, 364, 440, 491, 763, 793, 868
FaqI GGGAC 1 cut(s) 787
FatI CATG 8 cut(s) 240, 267, 360, 436, 487, 759, 789, 864
Fnu4HI GCNGC 2 cut(s) 537, 720
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 537, 720
FspBI CTAG 3 cut(s) 377, 770, 777
GlaI GCGC 1 cut(s) 578
GluI GCNGC 2 cut(s) 537, 720
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 3 cut(s) 171, 288, 521
HapII CCGG 2 cut(s) 56, 156
HhaI GCGC 1 cut(s) 579
Hin1II CATG 8 cut(s) 244, 271, 364, 440, 491, 763, 793, 868
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 833
HindII GTYRAC 1 cut(s) 833
HinfI GANTC 4 cut(s) 59, 227, 364, 785
HpaII CCGG 2 cut(s) 56, 156
Hpy166II GTNNAC 4 cut(s) 141, 217, 262, 833
Hpy188I TCNGA 2 cut(s) 12, 232
Hpy188III TCNNGA 7 cut(s) 56, 224, 361, 368, 377, 566, 865
Hpy8I GTNNAC 4 cut(s) 141, 217, 262, 833
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 2 cut(s) 167, 374
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 4 cut(s) 491, 539, 649, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 533, 800
HpyF3I CTNAG 5 cut(s) 25, 344, 423, 531, 606
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 8 cut(s) 244, 271, 364, 440, 491, 763, 793, 868
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 5 cut(s) 157, 195, 319, 800, 821
Lsp1109I GCAGC 2 cut(s) 523, 731
MaeI CTAG 3 cut(s) 377, 770, 777
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 28, 426
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 3 cut(s) 133, 283, 652
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 87, 290
MluCI AATT 4 cut(s) 6, 254, 714, 825
MlyI GAGTC 2 cut(s) 53, 373
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 8 cut(s) 43, 200, 231, 436, 539, 580, 665, 800
MroI TCCGGA 1 cut(s) 55
MseI TTAA 3 cut(s) 477, 635, 873
MslI CAYNNNNRTG 2 cut(s) 146, 764
MspI CCGG 2 cut(s) 56, 156
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 825
MwoI GCNNNNNNNGC 3 cut(s) 413, 533, 800
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 789
NdeII GATC 1 cut(s) 105
NlaIII CATG 8 cut(s) 244, 271, 364, 440, 491, 763, 793, 868
NlaIV GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 3 cut(s) 440, 491, 763
PagI TCATGA 2 cut(s) 360, 864
PfeI GAWTC 2 cut(s) 227, 785
PkrI GCNGC 2 cut(s) 538, 721
PleI GAGTC 2 cut(s) 53, 372
PpsI GAGTC 2 cut(s) 53, 372
PpuMI RGGWCCY 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 417
PspN4I GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
PspPPI RGGWCCY 1 cut(s) 589
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 3 cut(s) 164, 200, 654
RsaNI GTAC 3 cut(s) 163, 199, 653
RseI CAYNNNNRTG 2 cut(s) 146, 764
SaqAI TTAA 3 cut(s) 477, 635, 873
SatI GCNGC 2 cut(s) 537, 720
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
ScaI AGTACT 2 cut(s) 200, 654
SchI GAGTC 2 cut(s) 53, 373
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 87, 290
SinI GGWCC 4 cut(s) 138, 217, 262, 589
SmiMI CAYNNNNRTG 2 cut(s) 146, 764
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
SpeI ACTAGT 1 cut(s) 776
Sse9I AATT 4 cut(s) 6, 254, 714, 825
SsiI CCGC 3 cut(s) 193, 265, 452
SspMI CTAG 3 cut(s) 377, 770, 777
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 4 cut(s) 321, 742, 789, 836
TaaI ACNGT 2 cut(s) 167, 374
TaiI ACGT 1 cut(s) 505
TaqI TCGA 1 cut(s) 369
TasI AATT 4 cut(s) 6, 254, 714, 825
TatI WGTACW 2 cut(s) 198, 652
TfiI GAWTC 2 cut(s) 227, 785
Tru1I TTAA 3 cut(s) 477, 635, 873
Tru9I TTAA 3 cut(s) 477, 635, 873
TscAI CASTG 5 cut(s) 33, 148, 475, 556, 666
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 536, 719
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 229, 284, 690
TspRI CASTG 5 cut(s) 33, 148, 475, 556, 666
VpaK11BI GGWCC 4 cut(s) 138, 217, 262, 589
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 3 cut(s) 440, 491, 763
XspI CTAG 3 cut(s) 377, 770, 777
ZrmI AGTACT 2 cut(s) 200, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.