RchiOBHm_Chr2g0129651

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010298
Physical Location & Seq
Forward (+)
45317287 .. 45323028
5742 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50127

Sequence Viewer

Length: 1029 bp
ATGGCAATTCTGAACTACTATCTCTCAGTGACCTCCACAGCAACACCCATTTCTCCGGACTCATCATCAGCAAGCCAACCCGTGCCCGACCCGAGACAGAGCAAGATCCTACTGCCCAAGAAGAAGCCCCAGAAATGGTCCACTGGGATGGCTCCCGGCGAGTACGGTGGCCCACCAACCACCACGAAGCTCCGCAAGTACTGGGGAGGCGATGTGGACCCTCTTGAATCCGATGACTTCATGTGGAACAAAGAATTCGTGGACCGCATGAAGAAACTCATTCAGGGCCCTGATGACACTTCCACCCAAGTTGCTCCTGCCAAGGAAGTGCCTTCTGGGTTTCTTAGCTTGAATAGGGTCATGAGTCTCGACAGTCTAGAAGTTGATTTGAGCAAACAACTCACAGCTTCTCCTGCCCAGCCTGAGTTACAACAGCATGTTGAGGCTACACCGCAAAGTTTGAAAAGCACTGCTATTAAATGGAGACATGCACCAACACGACGTGAGCAAGATAAATGGGCCAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAAGCAAGGCGCTCAAAGGAGGACCCGAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTCAAGTTAAAGAAGAGATTGCAAGTACTTACACTGGGTATAGGAGGTGTTGGATTAGTTTCAGCTTATGTTTCATATTCCCCTGAAATTGCAGCGAGCTATGGTGTTGGGTTCCTTGGTTCTCTGGCTTACATGCGTATGCTAGGGACTAGTGTGGATTCCATGGCAGATGGAGCAAGAGGACTTCTCAAGGGAGCAATTGGTCAACCAAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACAGGTGGAATGGGATCGTTGTTCCACAATATGGATTCATGCACCTGGAATTGATACCAATGTTGGTGGGATTCTTCACGTATAAAATTGCTACTTTTATTCAAGCTATAGAGGAAGCAATTCCTCAAGTTGAGAAAATAGATACAAGTTCATGA

Protein Analysis

342

Amino Acids

37.77

Weight (kDa)

9.44

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 197 - 329 3.4e-73 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 905
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 193, 265, 452
AclWI GGATC 2 cut(s) 100, 896
AcsI RAATTY 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 3 cut(s) 164, 200, 654
AfiI CCNNNNNNNGG 2 cut(s) 135, 905
AgsI TTSAA 5 cut(s) 227, 352, 463, 631, 977
AhlI ACTAGT 1 cut(s) 776
AjiI CACGTC 1 cut(s) 503
AjnI CCWGG 1 cut(s) 918
AluBI AGCT 7 cut(s) 190, 348, 407, 605, 692, 726, 980
AluI AGCT 7 cut(s) 190, 348, 407, 605, 692, 726, 980
Alw26I GTCTC 3 cut(s) 88, 371, 478
AlwI GGATC 2 cut(s) 100, 896
Ama87I CYCGRG 1 cut(s) 91
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 169, 286, 519
ApaI GGGCCC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 536, 719
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 993
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
AsuC2I CCSGG 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 4 cut(s) 138, 217, 262, 589
BaeGI GKGCMC 2 cut(s) 87, 290
BaeI ACNNNNGTAYC 2 cut(s) 920, 953
BanII GRGCYC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 523, 731
BccI CCATC 2 cut(s) 142, 791
BciT130I CCWGG 1 cut(s) 920
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 3 cut(s) 88, 371, 478
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 3 cut(s) 377, 770, 777
BfmI CTRYAG 1 cut(s) 981
BfoI RGCGCY 1 cut(s) 580
BisI GCNGC 2 cut(s) 537, 720
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 2 cut(s) 538, 721
BmcAI AGTACT 2 cut(s) 200, 654
Bme1390I CCNGG 2 cut(s) 156, 920
Bme18I GGWCC 4 cut(s) 138, 217, 262, 589
BmeT110I CYCGRG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 503
BmgT120I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
BmiI GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
BmrFI CCNGG 2 cut(s) 156, 920
BmrI ACTGGG 3 cut(s) 153, 211, 671
BmuI ACTGGG 3 cut(s) 153, 211, 671
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 800, 984
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 954
BsaJI CCNNGG 4 cut(s) 321, 742, 789, 836
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 198, 228, 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 905
Bse1I ACTGG 4 cut(s) 148, 206, 547, 666
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 920
BseDI CCNNGG 4 cut(s) 321, 742, 789, 836
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 135, 905
BseMII CTCAG 3 cut(s) 39, 414, 597
BseNI ACTGG 4 cut(s) 148, 206, 547, 666
BseSI GKGCMC 2 cut(s) 87, 290
BseXI GCAGC 2 cut(s) 523, 731
BseYI CCCAGC 1 cut(s) 417
BshFI GGCC 3 cut(s) 171, 288, 521
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 2 cut(s) 56, 156
BslFI GGGAC 1 cut(s) 787
BslI CCNNNNNNNGG 2 cut(s) 135, 905
BsmAI GTCTC 3 cut(s) 88, 371, 478
BsmFI GGGAC 1 cut(s) 787
BsnI GGCC 3 cut(s) 171, 288, 521
BsoBI CYCGRG 1 cut(s) 91
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 87, 290
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 105, 888
Bsp1720I GCTNAGC 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 3 cut(s) 193, 265, 452
BspANI GGCC 3 cut(s) 171, 288, 521
BspCNI CTCAG 3 cut(s) 38, 415, 598
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 3 cut(s) 360, 864, 1025
BspLI GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
BspPI GGATC 2 cut(s) 100, 896
BsrI ACTGG 4 cut(s) 148, 206, 547, 666
BssECI CCNNGG 4 cut(s) 321, 742, 789, 836
BssMI GATC 2 cut(s) 105, 888
BssT1I CCWWGG 4 cut(s) 321, 742, 789, 836
Bst2UI CCWGG 1 cut(s) 920
Bst4CI ACNGT 2 cut(s) 167, 374
Bst6I CTCTTC 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 954
BstC8I GCNNGC 2 cut(s) 73, 724
BstDEI CTNAG 5 cut(s) 25, 344, 423, 531, 606
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 2 cut(s) 108, 891
BstMAI GTCTC 3 cut(s) 88, 371, 478
BstMBI GATC 2 cut(s) 105, 888
BstMWI GCNNNNNNNGC 3 cut(s) 413, 533, 800
BstNI CCWGG 1 cut(s) 920
BstNSI RCATGY 3 cut(s) 440, 491, 763
BstSCI CCNGG 2 cut(s) 154, 918
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 2 cut(s) 87, 290
BstV1I GCAGC 2 cut(s) 523, 731
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 3 cut(s) 171, 288, 521
BtgI CCRYGG 1 cut(s) 789
BtgZI GCGATG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 503
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 2 cut(s) 468, 556
BtsIMutI CAGTG 5 cut(s) 33, 141, 468, 556, 659
Cac8I GCNNGC 2 cut(s) 73, 724
CciI TCATGA 3 cut(s) 360, 864, 1025
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
Csp6I GTAC 3 cut(s) 163, 199, 653
CspCI CAANNNNNGTGG 4 cut(s) 292, 327, 921, 956
CviQI GTAC 3 cut(s) 163, 199, 653
DdeI CTNAG 5 cut(s) 25, 344, 423, 531, 606
DpnI GATC 2 cut(s) 107, 890
DpnII GATC 2 cut(s) 105, 888
DraIII CACNNNGTG 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 635
EarI CTCTTC 1 cut(s) 635
Eco130I CCWWGG 4 cut(s) 321, 742, 789, 836
Eco24I GRGCYC 1 cut(s) 290
Eco47I GGWCC 4 cut(s) 138, 217, 262, 589
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 3 cut(s) 286, 287, 589
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 918
EcoT14I CCWWGG 4 cut(s) 321, 742, 789, 836
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 4 cut(s) 321, 742, 789, 836
FaqI GGGAC 1 cut(s) 787
Fnu4HI GCNGC 2 cut(s) 537, 720
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 537, 720
FspBI CTAG 3 cut(s) 377, 770, 777
GlaI GCGC 1 cut(s) 578
GluI GCNGC 2 cut(s) 537, 720
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 3 cut(s) 171, 288, 521
HapII CCGG 2 cut(s) 56, 156
HhaI GCGC 1 cut(s) 579
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 833
HindII GTYRAC 1 cut(s) 833
HinfI GANTC 6 cut(s) 59, 227, 364, 785, 909, 945
HpaII CCGG 2 cut(s) 56, 156
Hpy166II GTNNAC 4 cut(s) 141, 217, 262, 833
Hpy188I TCNGA 2 cut(s) 12, 232
Hpy188III TCNNGA 8 cut(s) 56, 224, 361, 368, 377, 566, 865, 1026
Hpy8I GTNNAC 4 cut(s) 141, 217, 262, 833
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 2 cut(s) 167, 374
HpyCH4IV ACGT 2 cut(s) 502, 953
HpyCH4V TGCA 5 cut(s) 491, 539, 649, 719, 916
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 533, 800
HpyF3I CTNAG 5 cut(s) 25, 344, 423, 531, 606
HpySE526I ACGT 2 cut(s) 502, 953
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 105, 888
LmnI GCTCC 5 cut(s) 157, 195, 319, 800, 821
Lsp1109I GCAGC 2 cut(s) 523, 731
MaeI CTAG 3 cut(s) 377, 770, 777
MaeII ACGT 2 cut(s) 502, 953
MaeIII GTNAC 2 cut(s) 28, 426
MalI GATC 2 cut(s) 107, 890
MboI GATC 2 cut(s) 105, 888
MboII GAAGA 4 cut(s) 133, 283, 652, 940
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 87, 290
MluCI AATT 7 cut(s) 6, 254, 714, 825, 923, 960, 993
MlyI GAGTC 2 cut(s) 53, 373
MmeI TCCRAC 1 cut(s) 658
MroI TCCGGA 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 993
MseI TTAA 3 cut(s) 477, 635, 873
MslI CAYNNNNRTG 2 cut(s) 146, 764
MspI CCGG 2 cut(s) 56, 156
MspR9I CCNGG 2 cut(s) 156, 920
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 1 cut(s) 920
MwoI GCNNNNNNNGC 3 cut(s) 413, 533, 800
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 789
NdeII GATC 2 cut(s) 105, 888
NlaIV GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 3 cut(s) 440, 491, 763
PagI TCATGA 3 cut(s) 360, 864, 1025
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 4 cut(s) 227, 785, 909, 945
PflMI CCANNNNNTGG 1 cut(s) 905
PkrI GCNGC 2 cut(s) 538, 721
PleI GAGTC 2 cut(s) 53, 372
PpsI GAGTC 2 cut(s) 53, 372
Ppu21I YACGTR 1 cut(s) 954
PpuMI RGGWCCY 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 918
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 1 cut(s) 918
PspN4I GGNNCC 6 cut(s) 153, 219, 288, 591, 740, 849
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
PspPPI RGGWCCY 1 cut(s) 589
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 3 cut(s) 164, 200, 654
RsaNI GTAC 3 cut(s) 163, 199, 653
RseI CAYNNNNRTG 2 cut(s) 146, 764
SaqAI TTAA 3 cut(s) 477, 635, 873
SatI GCNGC 2 cut(s) 537, 720
Sau3AI GATC 2 cut(s) 105, 888
Sau96I GGNCC 8 cut(s) 138, 170, 217, 262, 286, 287, 519, 589
ScaI AGTACT 2 cut(s) 200, 654
SchI GAGTC 2 cut(s) 53, 373
ScrFI CCNGG 2 cut(s) 156, 920
SduI GDGCHC 2 cut(s) 87, 290
SfcI CTRYAG 1 cut(s) 981
SinI GGWCC 4 cut(s) 138, 217, 262, 589
SmiMI CAYNNNNRTG 2 cut(s) 146, 764
SmlI CTYRAG 2 cut(s) 815, 999
SmoI CTYRAG 2 cut(s) 815, 999
SpeI ACTAGT 1 cut(s) 776
Sse9I AATT 7 cut(s) 6, 254, 714, 825, 923, 960, 993
SsiI CCGC 3 cut(s) 193, 265, 452
SspMI CTAG 3 cut(s) 377, 770, 777
StyD4I CCNGG 2 cut(s) 154, 918
StyI CCWWGG 4 cut(s) 321, 742, 789, 836
TaaI ACNGT 2 cut(s) 167, 374
TaiI ACGT 2 cut(s) 505, 956
TaqI TCGA 1 cut(s) 369
TasI AATT 7 cut(s) 6, 254, 714, 825, 923, 960, 993
TatI WGTACW 2 cut(s) 198, 652
TfiI GAWTC 4 cut(s) 227, 785, 909, 945
Tru1I TTAA 3 cut(s) 477, 635, 873
Tru9I TTAA 3 cut(s) 477, 635, 873
TscAI CASTG 5 cut(s) 33, 148, 475, 556, 666
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 536, 719
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 229, 284, 690, 901, 1014
TspRI CASTG 5 cut(s) 33, 148, 475, 556, 666
Van91I CCANNNNNTGG 1 cut(s) 905
VpaK11BI GGWCC 4 cut(s) 138, 217, 262, 589
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 3 cut(s) 440, 491, 763
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 3 cut(s) 377, 770, 777
ZrmI AGTACT 2 cut(s) 200, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.