MD09G1238000.v1.1

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010298
Physical Location & Seq
Forward (+)
30185822 .. 30190618
4797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1238000.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGCGATTCTCAACTCTTATCTCTCAGTGACGTCCACAGCCACACCCATCTCCCCAGACTCAGCAACTCCACCCGTACCCGACCCGAGGCAGACCAAGATCCTATTGCCCAAGAAGAAGCCTATGAAATGGTCCACCGGGGTCGCTCCCGGCGATTACGGCGGACCTCCGACCACCACCAAGCTCCGGAAGTACTGGGGCGGCGAGGATGACCCTCTCACCTCTGACGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGAACCCAATTCTTCCATTCAATCCACTCCTGTCAAGGAGAAGCCTTCCGGGTTTCTCAGCATAAATAGAGTCATGAGCCTTGACAGTTTAGATGTTGATTTGAGCAAACAACTCACTGCTGCTCCTGCCCAGCCCAAGTTGGAACCGCAAGTTGAGGCTCCGGCTAAAAGTGCCAGCGGTACTGCTATCAAATGGAAATTGGCACCAACACGGCGTGAACAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGTTCTCGGGAGGACCCAAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTTAAGTTAAAGAAGAGGTTGCAATTCCTTACACTGGGTATAGGCGGTGTTGGATTAGTCTCAGCCTATGTTTCATATTCCCCTGAAATTACAGCTAGCTACAGTGTTGGGTTGCTTGGTTCTATAGTTTACATGCGTATGCTGGGGAGTAGCGTGGATTCCATGGCAGATGGAGCAAGGGGACTTCTCAAGGGAGCGATTGGGCAACCCAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACCGATGGAATGGGATCGTCGTTCCACAATATGGGTTTATGCACCTGGAATTGATACCAATGCTGGTGGGATTCTTCACATACAAGGTTGCTACTTTTATCCAAGCTATTGAGGAAGCACTTCCTGCAGTTGAGAAAGAGACATAA

Protein Analysis

337

Amino Acids

37.14

Weight (kDa)

9.56

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 194 - 326 4.6e-72 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 896
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 6 cut(s) 162, 201, 259, 425, 456, 663
AclWI GGATC 2 cut(s) 94, 887
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 32
AdeI CACNNNGTG 1 cut(s) 494
AfaI GTAC 3 cut(s) 78, 194, 460
AfiI CCNNNNNNNGG 4 cut(s) 87, 186, 652, 896
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 2 cut(s) 827, 909
AluBI AGCT 5 cut(s) 184, 596, 713, 717, 971
AluI AGCT 5 cut(s) 184, 596, 713, 717, 971
Alw26I GTCTC 2 cut(s) 682, 998
AlwI GGATC 2 cut(s) 94, 887
Ama87I CYCGRG 2 cut(s) 85, 573
Aor13HI TCCGGA 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 398, 527
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 984
AspS9I GGNCC 4 cut(s) 132, 164, 256, 580
AsuC2I CCSGG 3 cut(s) 139, 150, 328
AsuHPI GGTGA 1 cut(s) 211
AsuNHI GCTAGC 1 cut(s) 713
AvaI CYCGRG 2 cut(s) 85, 573
AvaII GGWCC 4 cut(s) 132, 164, 256, 580
BanI GGYRCC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 385, 514
BccI CCATC 3 cut(s) 56, 782, 864
BceAI ACGGC 2 cut(s) 175, 506
BciT130I CCWGG 2 cut(s) 829, 911
BcnI CCSGG 3 cut(s) 139, 150, 328
BcoDI GTCTC 2 cut(s) 682, 998
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 3 cut(s) 718, 741, 990
BisI GCNGC 3 cut(s) 202, 399, 528
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 3 cut(s) 203, 400, 529
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 5 cut(s) 139, 150, 328, 829, 911
Bme18I GGWCC 4 cut(s) 132, 164, 256, 580
BmeT110I CYCGRG 2 cut(s) 85, 573
BmgT120I GGNCC 4 cut(s) 132, 164, 256, 580
BmiI GGNNCC 6 cut(s) 282, 423, 438, 483, 582, 840
BmrFI CCNGG 5 cut(s) 139, 150, 328, 829, 911
BmrI ACTGGG 2 cut(s) 205, 662
BmtI GCTAGC 1 cut(s) 717
BmuI ACTGGG 2 cut(s) 205, 662
BpmI CTGGAG 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 791
BpuMI CCSGG 3 cut(s) 139, 150, 328
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 86, 138, 780, 827
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 186, 652, 896
Bse1I ACTGG 3 cut(s) 200, 538, 657
BseAI TCCGGA 1 cut(s) 186
BseBI CCWGG 2 cut(s) 829, 911
BseDI CCNNGG 4 cut(s) 86, 138, 780, 827
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 4 cut(s) 87, 186, 652, 896
BseMII CTCAG 5 cut(s) 39, 75, 349, 588, 693
BseNI ACTGG 3 cut(s) 200, 538, 657
BseXI GCAGC 2 cut(s) 385, 514
BseYI CCCAGC 2 cut(s) 408, 760
BshNI GGYRCC 1 cut(s) 481
BsiHKCI CYCGRG 2 cut(s) 85, 573
BsiSI CCGG 5 cut(s) 138, 150, 187, 327, 440
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 4 cut(s) 87, 186, 652, 896
BsmAI GTCTC 2 cut(s) 682, 998
BsmFI GGGAC 1 cut(s) 813
BsoBI CYCGRG 2 cut(s) 85, 573
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 99, 879
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 6 cut(s) 162, 201, 259, 425, 456, 663
BspCNI CTCAG 5 cut(s) 38, 74, 348, 589, 692
BspEI TCCGGA 1 cut(s) 186
BspHI TCATGA 2 cut(s) 351, 855
BspLI GGNNCC 6 cut(s) 282, 423, 438, 483, 582, 840
BspMAI CTGCAG 1 cut(s) 994
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 2 cut(s) 94, 887
BspT107I GGYRCC 1 cut(s) 481
BsrI ACTGG 3 cut(s) 200, 538, 657
BssECI CCNNGG 4 cut(s) 86, 138, 780, 827
BssMI GATC 2 cut(s) 99, 879
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 829, 911
Bst4CI ACNGT 2 cut(s) 365, 722
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 454, 715
BstDEI CTNAG 6 cut(s) 25, 61, 335, 522, 597, 679
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 102, 882
BstMAI GTCTC 2 cut(s) 682, 998
BstMBI GATC 2 cut(s) 99, 879
BstMWI GCNNNNNNNGC 7 cut(s) 159, 404, 449, 524, 791, 829, 989
BstNI CCWGG 2 cut(s) 829, 911
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 5 cut(s) 137, 148, 326, 827, 909
BstSFI CTRYAG 3 cut(s) 718, 741, 990
BstV1I GCAGC 2 cut(s) 385, 514
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 2 cut(s) 393, 547
BtsIMutI CAGTG 5 cut(s) 33, 393, 547, 650, 727
Cac8I GCNNGC 2 cut(s) 454, 715
CciI TCATGA 2 cut(s) 351, 855
Cfr13I GGNCC 4 cut(s) 132, 164, 256, 580
Csp6I GTAC 3 cut(s) 77, 193, 459
CspCI CAANNNNNGTGG 4 cut(s) 488, 523, 912, 947
CviAII CATG 6 cut(s) 253, 262, 352, 751, 781, 856
CviQI GTAC 3 cut(s) 77, 193, 459
DdeI CTNAG 6 cut(s) 25, 61, 335, 522, 597, 679
DpnI GATC 2 cut(s) 101, 881
DpnII GATC 2 cut(s) 99, 879
DraIII CACNNNGTG 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 780
Eco47I GGWCC 4 cut(s) 132, 164, 256, 580
Eco88I CYCGRG 2 cut(s) 85, 573
EcoO109I RGGNCCY 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 827, 909
EcoT14I CCWWGG 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 6 cut(s) 256, 265, 355, 754, 784, 859
FaqI GGGAC 1 cut(s) 813
FatI CATG 6 cut(s) 252, 261, 351, 750, 780, 855
Fnu4HI GCNGC 3 cut(s) 202, 399, 528
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 202, 399, 528
FspBI CTAG 1 cut(s) 714
GluI GCNGC 3 cut(s) 202, 399, 528
GsaI CCCAGC 2 cut(s) 412, 764
GsuI CTGGAG 1 cut(s) 555
HapII CCGG 5 cut(s) 138, 150, 187, 327, 440
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 6 cut(s) 256, 265, 355, 754, 784, 859
HinfI GANTC 5 cut(s) 7, 59, 348, 776, 936
HpaII CCGG 5 cut(s) 138, 150, 187, 327, 440
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 4 cut(s) 36, 135, 497, 748
Hpy188I TCNGA 2 cut(s) 171, 226
Hpy188III TCNNGA 6 cut(s) 187, 278, 352, 557, 575, 856
Hpy8I GTNNAC 4 cut(s) 36, 135, 497, 748
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 365, 722
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 530, 640, 907, 992
HpyF10VI GCNNNNNNNGC 7 cut(s) 159, 404, 449, 524, 791, 829, 989
HpyF3I CTNAG 6 cut(s) 25, 61, 335, 522, 597, 679
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 6 cut(s) 256, 265, 355, 754, 784, 859
Kpn2I TCCGGA 1 cut(s) 186
Kzo9I GATC 2 cut(s) 99, 879
LmnI GCTCC 6 cut(s) 151, 189, 406, 442, 791, 812
Lsp1109I GCAGC 2 cut(s) 385, 514
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 101, 881
MboI GATC 2 cut(s) 99, 879
MboII GAAGA 4 cut(s) 127, 282, 643, 931
MflI RGATCY 1 cut(s) 99
MluCI AATT 7 cut(s) 248, 286, 476, 560, 641, 705, 914
MlyI GAGTC 2 cut(s) 53, 357
MmeI TCCRAC 3 cut(s) 194, 399, 649
MroI TCCGGA 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 4 cut(s) 563, 621, 626, 864
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 5 cut(s) 138, 150, 187, 327, 440
MspR9I CCNGG 5 cut(s) 139, 150, 328, 829, 911
MvaI CCWGG 2 cut(s) 829, 911
MwoI GCNNNNNNNGC 7 cut(s) 159, 404, 449, 524, 791, 829, 989
NciI CCSGG 3 cut(s) 139, 150, 328
NcoI CCATGG 1 cut(s) 780
NdeII GATC 2 cut(s) 99, 879
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 6 cut(s) 256, 265, 355, 754, 784, 859
NlaIV GGNNCC 6 cut(s) 282, 423, 438, 483, 582, 840
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 754
PagI TCATGA 2 cut(s) 351, 855
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 3 cut(s) 7, 776, 936
PflMI CCANNNNNTGG 1 cut(s) 896
PkrI GCNGC 3 cut(s) 203, 400, 529
PleI GAGTC 2 cut(s) 53, 356
PpsI GAGTC 2 cut(s) 53, 356
PpuMI RGGWCCY 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 827, 909
PspFI CCCAGC 2 cut(s) 408, 760
PspGI CCWGG 2 cut(s) 827, 909
PspN4I GGNNCC 6 cut(s) 282, 423, 438, 483, 582, 840
PspPI GGNCC 4 cut(s) 132, 164, 256, 580
PspPPI RGGWCCY 1 cut(s) 580
PstI CTGCAG 1 cut(s) 994
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 3 cut(s) 78, 194, 460
RsaNI GTAC 3 cut(s) 77, 193, 459
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 4 cut(s) 563, 621, 626, 864
SatI GCNGC 3 cut(s) 202, 399, 528
Sau3AI GATC 2 cut(s) 99, 879
Sau96I GGNCC 4 cut(s) 132, 164, 256, 580
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 2 cut(s) 53, 357
ScrFI CCNGG 5 cut(s) 139, 150, 328, 829, 911
SfcI CTRYAG 3 cut(s) 718, 741, 990
SinI GGWCC 4 cut(s) 132, 164, 256, 580
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 7 cut(s) 248, 286, 476, 560, 641, 705, 914
SsiI CCGC 6 cut(s) 162, 201, 259, 425, 456, 663
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 5 cut(s) 137, 148, 326, 827, 909
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 365, 722
TaiI ACGT 1 cut(s) 35
TasI AATT 7 cut(s) 248, 286, 476, 560, 641, 705, 914
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 3 cut(s) 7, 776, 936
Tru1I TTAA 4 cut(s) 563, 621, 626, 864
Tru9I TTAA 4 cut(s) 563, 621, 626, 864
TscAI CASTG 5 cut(s) 33, 400, 547, 657, 727
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 398, 527
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 140, 223, 241, 278, 681
TspRI CASTG 5 cut(s) 33, 400, 547, 657, 727
Van91I CCANNNNNTGG 1 cut(s) 896
VpaK11BI GGWCC 4 cut(s) 132, 164, 256, 580
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 754
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.