Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010298

Physical Location & Seq

Genomic Coordinates Forward (+)

15727103 .. 15729743

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGATTCTCAACTCTTATCTCTCAGTGACGTCCACAGCCACACCCATCTCCCCAGACTCAGCAACTCCACCCTTACCCGACCCGAGACAGACCAAGATCCTATTGCCCAAGAAGAAGCCCATGAAATGGTCCACCGGGGTCGCTCCCGGCGATTACGGCGGACCTCCGACCACCACCAAGCTCCGCAAGTACTGGGGCGGCGAGGATGACCCTCTCACCTCTGACGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGAACCCAATTCTTCCATTCAATCCACTCCTGTCAAGGAGAAGCCTTCCGGGTTTCTCAGCATAAATAGAGTCATGAGCCTTGACAGTTTAGATGTTGATTTGAGCAAACAACTCACTGCTGCTCCTGCCCAGCCCAAGTTAGAACCACAAGTTGAGGCTCCGGCTAAAAGTGCCAGCAGTACTACTACCAAATGGAAATTGGCACCAACACGGCGTGAACAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGGGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGTTCTCAGGAGGACCCAAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTTAGGTTAAAGAAGAGGCTGCAATTCCTTACACTGGGTATAGGCAGTGTTGGATTAGTCTCAGCTTATGTTTCATATTCCCCTGAAATTACAGCTAGGATAACTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0033614 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

9.72

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31040
fragaria_vesca	FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica	MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica	Prupe.3G118500_v2.0.a1
pyrus_communis	pycom09g15650 pycom17g23410
rosa_chinensis	RchiOBHm_Chr2g0129651
rosa_laevigata	RLG00000019093
rosa_multiflora	Rmu_sc0020548.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114480
rosa_rugosa	Rorug02G0288100 Rorug02G0288100
rosa_samantha	Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana	Rw2G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	481
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	4 cut(s)	162, 187, 201, 259
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	2 cut(s)	194, 460
AfiI	CCNNNNNNNGG	2 cut(s)	129, 652
AgsI	TTSAA	1 cut(s)	299
AluBI	AGCT	4 cut(s)	184, 596, 683, 713
AluI	AGCT	4 cut(s)	184, 596, 683, 713
Alw26I	GTCTC	2 cut(s)	82, 682
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	85
ApeKI	GCWGC	3 cut(s)	398, 527, 637
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	4 cut(s)	132, 164, 256, 580
AsuC2I	CCSGG	3 cut(s)	139, 150, 328
AsuHPI	GGTGA	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	4 cut(s)	132, 164, 256, 580
BanI	GGYRCC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	385, 514, 624
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	2 cut(s)	175, 506
BcnI	CCSGG	3 cut(s)	139, 150, 328
BcoDI	GTCTC	2 cut(s)	82, 682
BfaI	CTAG	1 cut(s)	714
BisI	GCNGC	4 cut(s)	202, 399, 528, 638
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	4 cut(s)	203, 400, 529, 639
BmcAI	AGTACT	2 cut(s)	194, 460
Bme1390I	CCNGG	3 cut(s)	139, 150, 328
Bme18I	GGWCC	4 cut(s)	132, 164, 256, 580
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	4 cut(s)	132, 164, 256, 580
BmiI	GGNNCC	4 cut(s)	282, 438, 483, 582
BmrFI	CCNGG	3 cut(s)	139, 150, 328
BmrI	ACTGGG	3 cut(s)	205, 543, 662
BmuI	ACTGGG	3 cut(s)	205, 543, 662
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuMI	CCSGG	3 cut(s)	139, 150, 328
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 652
Bse1I	ACTGG	4 cut(s)	200, 538, 657, 727
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	129, 652
BseMII	CTCAG	6 cut(s)	39, 75, 349, 587, 588, 693
BseNI	ACTGG	4 cut(s)	200, 538, 657, 727
BseXI	GCAGC	3 cut(s)	385, 514, 624
BseYI	CCCAGC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	4 cut(s)	138, 150, 327, 440
BslI	CCNNNNNNNGG	2 cut(s)	129, 652
BsmAI	GTCTC	2 cut(s)	82, 682
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	99
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	4 cut(s)	162, 187, 201, 259
BspCNI	CTCAG	6 cut(s)	38, 74, 348, 586, 589, 692
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	4 cut(s)	282, 438, 483, 582
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	481
BsrI	ACTGG	4 cut(s)	200, 538, 657, 727
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	99
BssNI	GRCGYC	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	7 cut(s)	25, 61, 335, 522, 573, 597, 679
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	82, 682
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 404, 449, 524
BstSCI	CCNGG	3 cut(s)	137, 148, 326
BstV1I	GCAGC	3 cut(s)	385, 514, 624
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	3 cut(s)	393, 547, 670
BtsIMutI	CAGTG	5 cut(s)	33, 393, 547, 650, 670
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	4 cut(s)	132, 164, 256, 580
Csp6I	GTAC	2 cut(s)	193, 459
CspCI	CAANNNNNGTGG	2 cut(s)	488, 523
CviAII	CATG	4 cut(s)	124, 253, 262, 352
CviQI	GTAC	2 cut(s)	193, 459
DdeI	CTNAG	7 cut(s)	25, 61, 335, 522, 573, 597, 679
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
DraIII	CACNNNGTG	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
EciI	GGCGGA	1 cut(s)	177
Eco47I	GGWCC	4 cut(s)	132, 164, 256, 580
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	248
FaeI	CATG	4 cut(s)	127, 256, 265, 355
FaiI	YATR	9 cut(s)	125, 254, 263, 341, 353, 606, 659, 687, 694
FatI	CATG	4 cut(s)	123, 252, 261, 351
Fnu4HI	GCNGC	4 cut(s)	202, 399, 528, 638
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	4 cut(s)	202, 399, 528, 638
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	4 cut(s)	202, 399, 528, 638
GsaI	CCCAGC	1 cut(s)	412
HapII	CCGG	4 cut(s)	138, 150, 327, 440
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	127, 256, 265, 355
HinfI	GANTC	3 cut(s)	7, 59, 348
HpaII	CCGG	4 cut(s)	138, 150, 327, 440
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	3 cut(s)	36, 135, 497
Hpy188I	TCNGA	2 cut(s)	171, 226
Hpy188III	TCNNGA	4 cut(s)	278, 352, 557, 575
Hpy8I	GTNNAC	3 cut(s)	36, 135, 497
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	530, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 404, 449, 524
HpyF3I	CTNAG	7 cut(s)	25, 61, 335, 522, 573, 597, 679
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	127, 256, 265, 355
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	4 cut(s)	151, 189, 406, 442
Lsp1109I	GCAGC	3 cut(s)	385, 514, 624
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	127, 282, 643
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	6 cut(s)	248, 286, 476, 560, 641, 705
MlyI	GAGTC	2 cut(s)	53, 357
MmeI	TCCRAC	2 cut(s)	194, 649
MnlI	CCTC	7 cut(s)	177, 199, 225, 232, 427, 571, 627
MseI	TTAA	2 cut(s)	563, 626
MspI	CCGG	4 cut(s)	138, 150, 327, 440
MspR9I	CCNGG	3 cut(s)	139, 150, 328
MwoI	GCNNNNNNNGC	4 cut(s)	159, 404, 449, 524
NciI	CCSGG	3 cut(s)	139, 150, 328
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	127, 256, 265, 355
NlaIV	GGNNCC	4 cut(s)	282, 438, 483, 582
NmuCI	GTSAC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	203, 400, 529, 639
PleI	GAGTC	2 cut(s)	53, 356
PpsI	GAGTC	2 cut(s)	53, 356
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	282, 438, 483, 582
PspPI	GGNCC	4 cut(s)	132, 164, 256, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	2 cut(s)	194, 460
RsaNI	GTAC	2 cut(s)	193, 459
SaqAI	TTAA	2 cut(s)	563, 626
SatI	GCNGC	4 cut(s)	202, 399, 528, 638
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	4 cut(s)	132, 164, 256, 580
ScaI	AGTACT	2 cut(s)	194, 460
SchI	GAGTC	2 cut(s)	53, 357
ScrFI	CCNGG	3 cut(s)	139, 150, 328
SetI	ASST	8 cut(s)	35, 169, 186, 224, 598, 626, 685, 715
SinI	GGWCC	4 cut(s)	132, 164, 256, 580
Sse9I	AATT	6 cut(s)	248, 286, 476, 560, 641, 705
SsiI	CCGC	4 cut(s)	162, 187, 201, 259
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	137, 148, 326
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	35
TasI	AATT	6 cut(s)	248, 286, 476, 560, 641, 705
TatI	WGTACW	2 cut(s)	192, 458
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	563, 626
Tru9I	TTAA	2 cut(s)	563, 626
TscAI	CASTG	5 cut(s)	33, 400, 547, 657, 670
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	398, 527, 637
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	140, 223, 241, 278, 681
TspRI	CASTG	5 cut(s)	33, 400, 547, 657, 670
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	4 cut(s)	132, 164, 256, 580
XapI	RAATTY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XspI	CTAG	1 cut(s)	714
ZraI	GACGTC	1 cut(s)	33
ZrmI	AGTACT	2 cut(s)	194, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.