Rroxscaffold_2G00114480

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010298
Physical Location & Seq
Reverse (-)
40537163 .. 40542652
5490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114480.1

Sequence Viewer

Length: 1044 bp
ATGGCAATTCTGAACTACTATCTCTCAGTGACCTCCACAGCAACACCCATTTCTCCGGACTCATCATCATCATCAGCAAGCCAACCCGTGCCCGACCCGAGACAGAGCAAGATCCTACTGCCCAAGAAGAAGCCCCAGAAATGGTCCACTGGGATGGCTCCCGGCGAGTACGGTGGCCCACCAACCACCACGAAGCTCCGCAAGTACTGGGGAGGCGATGTGGACCCTCTTGAATCCGATGACTTCATGTGGAACAAAGAATTCGTGGACCGCATGAAGAAACTCATTCAGGGCCCTGATGACACTTCCACCCAAGTTGCTCCTGCCAAGGAAGTGCCTTCTGGGTTTCTTAGCTTGAATAGGGTCATGAGTCTCGACAGGACGTACAGTCTAGAAGTTGATTTGAGCAAACAACTCACAGCTTCTCCTGCCCAGCCTGAGTTACAACAGCATGTTGAGGCTACGCCGCAAAGTTTGAAAAGCACTGCTATTAAATGGAGACACGCACCAACACGACGTGAGCAAGATAAATGGGCCAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAAGCAAGGCGCTCAAAGGAGGACCCAAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTCAAGTTAAAGAAGAGATTGCAAGTACTTACACTGGGTATAGGAGGTGTTGGATTAGTTTCAGCTTATGTTTCATATTCCCCTGAAATTGCAGCTAGCTATGGTGTTGGGTTCCTTGGTTCTCTGGCTTACATGCGTATGCTAGGGACTAGTGTGGATTCCATGGCAGATGGAGCAAGAGGACTTCTCAAGGGAGCAATTGGTCAACCAAGGCTATTGGTTCCTGTTGTGTTAGTCATGATATTTAACAGGTGGAATGGGATCGTTGTTCCACAATATGGATTCATGCACCTGGAATTGATACCAATGTTGGTGGGATTCTTCACGTATAAAATTGCTACTTTTATCCAAGCTATAGAGGAAGCAATTCCTCAAGTTGAGAAAATAGATACAAGTTCATGA

Protein Analysis

347

Amino Acids

38.37

Weight (kDa)

9.49

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 202 - 334 3.5e-73 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 920
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 199, 271, 467
AclWI GGATC 2 cut(s) 106, 911
AcsI RAATTY 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 4 cut(s) 170, 206, 386, 669
AfiI CCNNNNNNNGG 2 cut(s) 141, 920
AgsI TTSAA 4 cut(s) 233, 358, 478, 646
AhdI GACNNNNNGTC 1 cut(s) 387
AhlI ACTAGT 1 cut(s) 791
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 1 cut(s) 933
AluBI AGCT 8 cut(s) 196, 354, 422, 620, 707, 737, 741, 995
AluI AGCT 8 cut(s) 196, 354, 422, 620, 707, 737, 741, 995
Alw26I GTCTC 3 cut(s) 94, 377, 493
AlwI GGATC 2 cut(s) 106, 911
Ama87I CYCGRG 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 175, 292, 534
ApaI GGGCCC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 551, 734
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 534, 604
AsuC2I CCSGG 1 cut(s) 162
AsuNHI GCTAGC 1 cut(s) 737
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 4 cut(s) 144, 223, 268, 604
BaeGI GKGCMC 2 cut(s) 93, 296
BaeI ACNNNNGTAYC 2 cut(s) 935, 968
BanII GRGCYC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 538, 746
BccI CCATC 2 cut(s) 148, 806
BciT130I CCWGG 1 cut(s) 935
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 94, 377, 493
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 4 cut(s) 392, 738, 785, 792
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 595
BisI GCNGC 3 cut(s) 467, 552, 735
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 3 cut(s) 468, 553, 736
BmcAI AGTACT 2 cut(s) 206, 669
Bme1390I CCNGG 2 cut(s) 162, 935
Bme18I GGWCC 4 cut(s) 144, 223, 268, 604
BmeRI GACNNNNNGTC 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 534, 604
BmiI GGNNCC 6 cut(s) 159, 225, 294, 606, 755, 864
BmrFI CCNGG 2 cut(s) 162, 935
BmrI ACTGGG 3 cut(s) 159, 217, 686
BmtI GCTAGC 1 cut(s) 741
BmuI ACTGGG 3 cut(s) 159, 217, 686
BplI GAGNNNNNCTC 2 cut(s) 813, 845
BpmI CTGGAG 1 cut(s) 579
Bpu1102I GCTNAGC 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 815, 999
BpuMI CCSGG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 969
BsaJI CCNNGG 4 cut(s) 327, 757, 804, 851
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 204, 234, 409, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 920
Bse1I ACTGG 4 cut(s) 154, 212, 562, 681
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 4 cut(s) 327, 757, 804, 851
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 141, 920
BseMII CTCAG 3 cut(s) 39, 429, 612
BseNI ACTGG 4 cut(s) 154, 212, 562, 681
BseSI GKGCMC 2 cut(s) 93, 296
BseXI GCAGC 2 cut(s) 538, 746
BseYI CCCAGC 1 cut(s) 432
BshFI GGCC 3 cut(s) 177, 294, 536
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 56, 162
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 2 cut(s) 141, 920
BsmAI GTCTC 3 cut(s) 94, 377, 493
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 3 cut(s) 177, 294, 536
BsoBI CYCGRG 1 cut(s) 97
Bsp120I GGGCCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 93, 296
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 111, 903
Bsp1720I GCTNAGC 1 cut(s) 621
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 3 cut(s) 199, 271, 467
BspANI GGCC 3 cut(s) 177, 294, 536
BspCNI CTCAG 3 cut(s) 38, 430, 613
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 3 cut(s) 366, 879, 1040
BspLI GGNNCC 6 cut(s) 159, 225, 294, 606, 755, 864
BspOI GCTAGC 1 cut(s) 741
BspPI GGATC 2 cut(s) 106, 911
BsrI ACTGG 4 cut(s) 154, 212, 562, 681
BssECI CCNNGG 4 cut(s) 327, 757, 804, 851
BssMI GATC 2 cut(s) 111, 903
BssT1I CCWWGG 4 cut(s) 327, 757, 804, 851
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 2 cut(s) 173, 389
Bst6I CTCTTC 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 969
BstC8I GCNNGC 2 cut(s) 79, 739
BstDEI CTNAG 5 cut(s) 25, 350, 438, 546, 621
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 2 cut(s) 114, 906
BstMAI GTCTC 3 cut(s) 94, 377, 493
BstMBI GATC 2 cut(s) 111, 903
BstMWI GCNNNNNNNGC 3 cut(s) 428, 548, 815
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 2 cut(s) 455, 778
BstSCI CCNGG 2 cut(s) 160, 933
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 2 cut(s) 93, 296
BstV1I GCAGC 2 cut(s) 538, 746
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 3 cut(s) 177, 294, 536
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 2 cut(s) 483, 571
BtsIMutI CAGTG 5 cut(s) 33, 147, 483, 571, 674
Cac8I GCNNGC 2 cut(s) 79, 739
CciI TCATGA 3 cut(s) 366, 879, 1040
CfoI GCGC 1 cut(s) 594
Cfr13I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 534, 604
Csp6I GTAC 4 cut(s) 169, 205, 385, 668
CspCI CAANNNNNGTGG 4 cut(s) 298, 333, 936, 971
CviAII CATG 9 cut(s) 247, 274, 367, 452, 775, 805, 880, 928, 1041
CviQI GTAC 4 cut(s) 169, 205, 385, 668
DdeI CTNAG 5 cut(s) 25, 350, 438, 546, 621
DpnI GATC 2 cut(s) 113, 905
DpnII GATC 2 cut(s) 111, 903
DraIII CACNNNGTG 1 cut(s) 518
DriI GACNNNNNGTC 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 650
Eam1105I GACNNNNNGTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 650
Eco130I CCWWGG 4 cut(s) 327, 757, 804, 851
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 4 cut(s) 144, 223, 268, 604
Eco88I CYCGRG 1 cut(s) 97
EcoO109I RGGNCCY 3 cut(s) 292, 293, 604
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 933
EcoT14I CCWWGG 4 cut(s) 327, 757, 804, 851
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 4 cut(s) 327, 757, 804, 851
FaeI CATG 9 cut(s) 250, 277, 370, 455, 778, 808, 883, 931, 1044
FaqI GGGAC 1 cut(s) 802
FatI CATG 9 cut(s) 246, 273, 366, 451, 774, 804, 879, 927, 1040
Fnu4HI GCNGC 3 cut(s) 467, 552, 735
FokI GGATG 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 467, 552, 735
FspBI CTAG 4 cut(s) 392, 738, 785, 792
GlaI GCGC 1 cut(s) 593
GluI GCNGC 3 cut(s) 467, 552, 735
GsaI CCCAGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 579
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 3 cut(s) 177, 294, 536
HapII CCGG 2 cut(s) 56, 162
HhaI GCGC 1 cut(s) 594
Hin1II CATG 9 cut(s) 250, 277, 370, 455, 778, 808, 883, 931, 1044
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 1 cut(s) 848
HindII GTYRAC 1 cut(s) 848
HinfI GANTC 6 cut(s) 59, 233, 370, 800, 924, 960
HpaII CCGG 2 cut(s) 56, 162
Hpy166II GTNNAC 4 cut(s) 147, 223, 268, 848
Hpy188I TCNGA 2 cut(s) 12, 238
Hpy188III TCNNGA 8 cut(s) 56, 230, 367, 374, 392, 581, 880, 1041
Hpy8I GTNNAC 4 cut(s) 147, 223, 268, 848
Hpy99I CGWCG 1 cut(s) 519
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 2 cut(s) 173, 389
HpyCH4IV ACGT 3 cut(s) 383, 517, 968
HpyCH4V TGCA 4 cut(s) 554, 664, 734, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 548, 815
HpyF3I CTNAG 5 cut(s) 25, 350, 438, 546, 621
HpySE526I ACGT 3 cut(s) 383, 517, 968
Hsp92II CATG 9 cut(s) 250, 277, 370, 455, 778, 808, 883, 931, 1044
HspAI GCGC 1 cut(s) 592
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 111, 903
LmnI GCTCC 5 cut(s) 163, 201, 325, 815, 836
Lsp1109I GCAGC 2 cut(s) 538, 746
MaeI CTAG 4 cut(s) 392, 738, 785, 792
MaeII ACGT 3 cut(s) 383, 517, 968
MaeIII GTNAC 2 cut(s) 28, 441
MalI GATC 2 cut(s) 113, 905
MboI GATC 2 cut(s) 111, 903
MboII GAAGA 4 cut(s) 139, 289, 667, 955
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 2 cut(s) 93, 296
MluCI AATT 7 cut(s) 6, 260, 729, 840, 938, 975, 1008
MlyI GAGTC 2 cut(s) 53, 379
MmeI TCCRAC 1 cut(s) 673
MroI TCCGGA 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 3 cut(s) 492, 650, 888
MslI CAYNNNNRTG 2 cut(s) 152, 779
MspI CCGG 2 cut(s) 56, 162
MspR9I CCNGG 2 cut(s) 162, 935
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 1 cut(s) 935
MwoI GCNNNNNNNGC 3 cut(s) 428, 548, 815
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 804
NdeII GATC 2 cut(s) 111, 903
NheI GCTAGC 1 cut(s) 737
NlaIII CATG 9 cut(s) 250, 277, 370, 455, 778, 808, 883, 931, 1044
NlaIV GGNNCC 6 cut(s) 159, 225, 294, 606, 755, 864
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 2 cut(s) 455, 778
PagI TCATGA 3 cut(s) 366, 879, 1040
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 4 cut(s) 233, 800, 924, 960
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 3 cut(s) 468, 553, 736
PleI GAGTC 2 cut(s) 53, 378
PpsI GAGTC 2 cut(s) 53, 378
Ppu21I YACGTR 1 cut(s) 969
PpuMI RGGWCCY 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 933
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 6 cut(s) 159, 225, 294, 606, 755, 864
PspOMI GGGCCC 1 cut(s) 292
PspPI GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 534, 604
PspPPI RGGWCCY 1 cut(s) 604
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 4 cut(s) 170, 206, 386, 669
RsaNI GTAC 4 cut(s) 169, 205, 385, 668
RseI CAYNNNNRTG 2 cut(s) 152, 779
SaqAI TTAA 3 cut(s) 492, 650, 888
SatI GCNGC 3 cut(s) 467, 552, 735
Sau3AI GATC 2 cut(s) 111, 903
Sau96I GGNCC 8 cut(s) 144, 176, 223, 268, 292, 293, 534, 604
ScaI AGTACT 2 cut(s) 206, 669
SchI GAGTC 2 cut(s) 53, 379
ScrFI CCNGG 2 cut(s) 162, 935
SduI GDGCHC 2 cut(s) 93, 296
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 4 cut(s) 144, 223, 268, 604
SmiMI CAYNNNNRTG 2 cut(s) 152, 779
SmlI CTYRAG 2 cut(s) 830, 1014
SmoI CTYRAG 2 cut(s) 830, 1014
SpeI ACTAGT 1 cut(s) 791
Sse9I AATT 7 cut(s) 6, 260, 729, 840, 938, 975, 1008
SsiI CCGC 3 cut(s) 199, 271, 467
SspMI CTAG 4 cut(s) 392, 738, 785, 792
StyD4I CCNGG 2 cut(s) 160, 933
StyI CCWWGG 4 cut(s) 327, 757, 804, 851
TaaI ACNGT 2 cut(s) 173, 389
TaiI ACGT 3 cut(s) 386, 520, 971
TaqI TCGA 1 cut(s) 375
TasI AATT 7 cut(s) 6, 260, 729, 840, 938, 975, 1008
TatI WGTACW 2 cut(s) 204, 667
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 4 cut(s) 233, 800, 924, 960
Tru1I TTAA 3 cut(s) 492, 650, 888
Tru9I TTAA 3 cut(s) 492, 650, 888
TscAI CASTG 5 cut(s) 33, 154, 490, 571, 681
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 551, 734
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 235, 290, 705, 916, 1029
TspRI CASTG 5 cut(s) 33, 154, 490, 571, 681
Van91I CCANNNNNTGG 1 cut(s) 920
VpaK11BI GGWCC 4 cut(s) 144, 223, 268, 604
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 391
XceI RCATGY 2 cut(s) 455, 778
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 4 cut(s) 392, 738, 785, 792
ZrmI AGTACT 2 cut(s) 206, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.