FvH4_6g27380

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010298
Physical Location & Seq
Forward (+)
20957114 .. 20962433
5320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27380.t4

Sequence Viewer

Length: 1035 bp
ATGGCAATTCTGAACTACTATCTCTCAGTGACCTCCACAGCAACACCCATTTCTCCTGACTCCTCATCATCATCATCCGCAGGCCAGCCCGTACCCGACCCGAGACTCAGCAAGATCCTACTTCCCAAGAAGAAGCCCCAGAAATGGTCCACTGGGATGGCTCCCGGCGACTACGGTGGCCCACCAACCACCACCAAGCTCCGCAAGTACTGGGGTGGTGACGTCGACCCTCTTGAGTCTGACGACTTCATGTGGAACAAAGAATTCATGGACCGCATGCAGAAACTCATTCGGGACCCTGACACCTCCACCCAAGTCGCTCCTCCCAAGGAAGTGCCTTCTGGATTTCTTAGCTTGAATAGGGTCATGAGCCTTGACAGTTTAGAGGTTGATTTGAGCAAACAACTCACAGCTTCTCCTGCCCAGCCTGAGTTACAACAGCAAGTAGAGGCTACAACGCAAAGTTTAAAAAGCAATGCTATTAAATGGAGACATGCACCAACACGGCGTGAGCAAGATAAATGGGCCAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGCTCAAAGGAGGACCCAAAAGTAGTAGCTGAGAAGTATAGAAAGCAGTATTTCAGGTTAAAGAAGAGATTGCAAGTACTTACACTGGGTATAGGAGGTGTTGGTTTGGTTTCAGCCTATGTTTCATATTCCCCTGAAATTGCAGCTAGCTATGGTGTTGGGTTCCTTGGTTCTCTGGCTTACATGCGTATGCTAGGGAGTAGCGTGGATTCCATGGCGGATGGAGCAAGAGGACTTCTCAAGGGAGCAATTGGTCAACCAAGGCTATTGGTTCCTGTTGTATTAGTCATGATCTTTAACAGGTGGAATGGGATTGTTGTTCCACAATATGGATTCATGCACCTGGAATTGATACCAATGTTGGTGGGATTCTTCACGTACAAAATTGCCACCTTTATCCAAGCTATAGAGGAAGCAATTCCTCAAGTTGAGAAAATAGATACAAGCTCATGA

Protein Analysis

345

Amino Acids

38.07

Weight (kDa)

9.52

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 199 - 298 7.5e-50 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB7I CCANNNNNTGG 1 cut(s) 911
AccI GTMKAC 1 cut(s) 225
AciI CCGC 4 cut(s) 78, 202, 274, 800
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 4 cut(s) 93, 209, 660, 962
AfiI CCNNNNNNNGG 2 cut(s) 144, 911
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 1 cut(s) 924
AluBI AGCT 8 cut(s) 199, 354, 413, 611, 728, 732, 986, 1029
AluI AGCT 8 cut(s) 199, 354, 413, 611, 728, 732, 986, 1029
Alw26I GTCTC 2 cut(s) 97, 484
AlwI GGATC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 3 cut(s) 82, 178, 525
ApeKI GCWGC 2 cut(s) 542, 725
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 999
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 6 cut(s) 147, 179, 271, 295, 525, 595
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 230
AsuNHI GCTAGC 1 cut(s) 728
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 4 cut(s) 147, 271, 295, 595
BaeI ACNNNNGTAYC 2 cut(s) 926, 959
BbvI GCAGC 2 cut(s) 529, 737
BccI CCATC 2 cut(s) 151, 797
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 926
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 97, 484
BfaI CTAG 2 cut(s) 729, 776
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 586
BisI GCNGC 2 cut(s) 543, 726
BlsI GCNGC 2 cut(s) 544, 727
BmcAI AGTACT 2 cut(s) 209, 660
Bme1390I CCNGG 2 cut(s) 165, 926
Bme18I GGWCC 4 cut(s) 147, 271, 295, 595
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 6 cut(s) 147, 179, 271, 295, 525, 595
BmiI GGNNCC 6 cut(s) 162, 296, 297, 597, 746, 855
BmrFI CCNGG 2 cut(s) 165, 926
BmrI ACTGGG 3 cut(s) 162, 220, 677
BmtI GCTAGC 1 cut(s) 732
BmuI ACTGGG 3 cut(s) 162, 220, 677
BplI GAGNNNNNCTC 2 cut(s) 804, 836
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 3 cut(s) 254, 806, 990
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 327, 748, 795, 842
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 911
Bse1I ACTGG 4 cut(s) 157, 215, 553, 672
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 926
BseDI CCNNGG 4 cut(s) 327, 748, 795, 842
BseGI GGATG 3 cut(s) 74, 162, 808
BseLI CCNNNNNNNGG 2 cut(s) 144, 911
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 4 cut(s) 39, 121, 420, 603
BseNI ACTGG 4 cut(s) 157, 215, 553, 672
BseRI GAGGAG 2 cut(s) 52, 312
BseXI GCAGC 2 cut(s) 529, 737
BseYI CCCAGC 1 cut(s) 423
BshFI GGCC 3 cut(s) 84, 180, 527
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 144, 911
BsmAI GTCTC 2 cut(s) 97, 484
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 3 cut(s) 84, 180, 527
BsoBI CYCGRG 1 cut(s) 100
Bsp143I GATC 2 cut(s) 114, 873
Bsp19I CCATGG 1 cut(s) 795
BspACI CCGC 4 cut(s) 78, 202, 274, 800
BspANI GGCC 3 cut(s) 84, 180, 527
BspCNI CTCAG 4 cut(s) 38, 120, 421, 604
BspHI TCATGA 3 cut(s) 366, 870, 1031
BspLI GGNNCC 6 cut(s) 162, 296, 297, 597, 746, 855
BspOI GCTAGC 1 cut(s) 732
BspPI GGATC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 4 cut(s) 157, 215, 553, 672
BssECI CCNNGG 4 cut(s) 327, 748, 795, 842
BssMI GATC 2 cut(s) 114, 873
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 4 cut(s) 327, 748, 795, 842
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 2 cut(s) 176, 380
Bst6I CTCTTC 1 cut(s) 641
BstACI GRCGYC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 960
BstC8I GCNNGC 4 cut(s) 82, 86, 278, 730
BstDEI CTNAG 6 cut(s) 25, 107, 350, 429, 537, 612
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 3 cut(s) 74, 162, 808
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 2 cut(s) 117, 876
BstMAI GTCTC 2 cut(s) 97, 484
BstMBI GATC 2 cut(s) 114, 873
BstMWI GCNNNNNNNGC 3 cut(s) 419, 539, 806
BstNI CCWGG 1 cut(s) 926
BstNSI RCATGY 3 cut(s) 280, 497, 769
BstSCI CCNGG 2 cut(s) 163, 924
BstSFI CTRYAG 1 cut(s) 987
BstV1I GCAGC 2 cut(s) 529, 737
BstX2I RGATCY 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 1 cut(s) 114
BsuRI GGCC 3 cut(s) 84, 180, 527
BtgI CCRYGG 1 cut(s) 795
BtsCI GGATG 3 cut(s) 74, 162, 808
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 4 cut(s) 33, 150, 562, 665
Cac8I GCNNGC 4 cut(s) 82, 86, 278, 730
CciI TCATGA 3 cut(s) 366, 870, 1031
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 6 cut(s) 147, 179, 271, 295, 525, 595
Csp6I GTAC 4 cut(s) 92, 208, 659, 961
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviQI GTAC 4 cut(s) 92, 208, 659, 961
DdeI CTNAG 6 cut(s) 25, 107, 350, 429, 537, 612
DpnI GATC 2 cut(s) 116, 875
DpnII GATC 2 cut(s) 114, 873
DraI TTTAAA 1 cut(s) 468
DraIII CACNNNGTG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 1 cut(s) 815
Eco130I CCWWGG 4 cut(s) 327, 748, 795, 842
Eco47I GGWCC 4 cut(s) 147, 271, 295, 595
Eco88I CYCGRG 1 cut(s) 100
EcoO109I RGGNCCY 2 cut(s) 295, 595
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 4 cut(s) 327, 748, 795, 842
ErhI CCWWGG 4 cut(s) 327, 748, 795, 842
FaqI GGGAC 1 cut(s) 308
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 543, 726
FokI GGATG 3 cut(s) 61, 169, 815
Fsp4HI GCNGC 2 cut(s) 543, 726
FspBI CTAG 2 cut(s) 729, 776
GlaI GCGC 1 cut(s) 584
GluI GCNGC 2 cut(s) 543, 726
GsaI CCCAGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 586
HaeIII GGCC 3 cut(s) 84, 180, 527
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HincII GTYRAC 2 cut(s) 226, 839
HindII GTYRAC 2 cut(s) 226, 839
HinfI GANTC 6 cut(s) 59, 105, 236, 791, 915, 951
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 3 cut(s) 150, 226, 839
Hpy188I TCNGA 2 cut(s) 12, 241
Hpy188III TCNNGA 8 cut(s) 56, 233, 293, 342, 367, 572, 871, 1032
Hpy8I GTNNAC 3 cut(s) 150, 226, 839
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 2 cut(s) 176, 380
HpyCH4IV ACGT 2 cut(s) 222, 959
HpyCH4V TGCA 6 cut(s) 280, 497, 545, 655, 725, 922
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 539, 806
HpyF3I CTNAG 6 cut(s) 25, 107, 350, 429, 537, 612
HpySE526I ACGT 2 cut(s) 222, 959
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 1 cut(s) 583
KflI GGGWCCC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 114, 873
LmnI GCTCC 5 cut(s) 166, 204, 325, 806, 827
Lsp1109I GCAGC 2 cut(s) 529, 737
MaeI CTAG 2 cut(s) 729, 776
MaeII ACGT 2 cut(s) 222, 959
MaeIII GTNAC 3 cut(s) 28, 218, 432
MalI GATC 2 cut(s) 116, 875
MboI GATC 2 cut(s) 114, 873
MboII GAAGA 3 cut(s) 142, 658, 946
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 114
MluCI AATT 8 cut(s) 6, 263, 575, 720, 831, 929, 966, 999
MlyI GAGTC 3 cut(s) 53, 99, 245
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 5 cut(s) 467, 483, 578, 641, 879
MslI CAYNNNNRTG 2 cut(s) 155, 770
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 165, 926
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 926
MwoI GCNNNNNNNGC 3 cut(s) 419, 539, 806
NciI CCSGG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 795
NdeII GATC 2 cut(s) 114, 873
NheI GCTAGC 1 cut(s) 728
NlaIV GGNNCC 6 cut(s) 162, 296, 297, 597, 746, 855
NmuCI GTSAC 2 cut(s) 28, 218
NspI RCATGY 3 cut(s) 280, 497, 769
PaeI GCATGC 1 cut(s) 280
PagI TCATGA 3 cut(s) 366, 870, 1031
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 3 cut(s) 791, 915, 951
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 2 cut(s) 544, 727
PleI GAGTC 3 cut(s) 53, 99, 244
PpsI GAGTC 3 cut(s) 53, 99, 244
Ppu21I YACGTR 1 cut(s) 960
PpuMI RGGWCCY 2 cut(s) 295, 595
Psp5II RGGWCCY 2 cut(s) 295, 595
Psp6I CCWGG 1 cut(s) 924
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 6 cut(s) 162, 296, 297, 597, 746, 855
PspPI GGNCC 6 cut(s) 147, 179, 271, 295, 525, 595
PspPPI RGGWCCY 2 cut(s) 295, 595
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 4 cut(s) 93, 209, 660, 962
RsaNI GTAC 4 cut(s) 92, 208, 659, 961
RseI CAYNNNNRTG 2 cut(s) 155, 770
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 5 cut(s) 467, 483, 578, 641, 879
SatI GCNGC 2 cut(s) 543, 726
Sau3AI GATC 2 cut(s) 114, 873
Sau96I GGNCC 6 cut(s) 147, 179, 271, 295, 525, 595
ScaI AGTACT 2 cut(s) 209, 660
SchI GAGTC 3 cut(s) 53, 99, 245
ScrFI CCNGG 2 cut(s) 165, 926
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 4 cut(s) 147, 271, 295, 595
SmiMI CAYNNNNRTG 2 cut(s) 155, 770
SmlI CTYRAG 3 cut(s) 233, 821, 1005
SmoI CTYRAG 3 cut(s) 233, 821, 1005
SphI GCATGC 1 cut(s) 280
Sse9I AATT 8 cut(s) 6, 263, 575, 720, 831, 929, 966, 999
SsiI CCGC 4 cut(s) 78, 202, 274, 800
SspMI CTAG 2 cut(s) 729, 776
StyD4I CCNGG 2 cut(s) 163, 924
StyI CCWWGG 4 cut(s) 327, 748, 795, 842
TaaI ACNGT 2 cut(s) 176, 380
TaiI ACGT 2 cut(s) 225, 962
TaqI TCGA 1 cut(s) 225
TasI AATT 8 cut(s) 6, 263, 575, 720, 831, 929, 966, 999
TatI WGTACW 2 cut(s) 207, 658
TfiI GAWTC 3 cut(s) 791, 915, 951
Tru1I TTAA 5 cut(s) 467, 483, 578, 641, 879
Tru9I TTAA 5 cut(s) 467, 483, 578, 641, 879
TscAI CASTG 4 cut(s) 33, 157, 562, 672
TseFI GTSAC 2 cut(s) 28, 218
TseI GCWGC 2 cut(s) 542, 725
Tsp45I GTSAC 2 cut(s) 28, 218
TspDTI ATGAA 4 cut(s) 238, 256, 696, 907
TspRI CASTG 4 cut(s) 33, 157, 562, 672
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 4 cut(s) 147, 271, 295, 595
XapI RAATTY 1 cut(s) 263
XceI RCATGY 3 cut(s) 280, 497, 769
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 2 cut(s) 729, 776
ZraI GACGTC 1 cut(s) 223
ZrmI AGTACT 2 cut(s) 209, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.