Rorug02G0288100

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010298
Physical Location & Seq
Forward (+)
31519523 .. 31527227
7705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0288100.1

Sequence Viewer

Length: 1023 bp
ATGGCCACAAAATCGCAGATATTTACAGGATTGACAATGGCGTCAACAACGCCCGCGTCTTCATTCCAAGCCTCTTCTTCTTCATCATCATCATCCTCCACCAGTCTCTCTATGGTCAGGAGACCTCTCGCGGCCTCCTTCTTTAATGGTGGAGCGGGAGCTCTGAGAGTTGAAGTGATTAGGGTCGCTCCTTCCTATAAGAGACATAAGTTTAGACAACGTGGAGGTGCTCTTGGTGCCCGTATGAACCTTTTTGATCGGTTTGCTAGAGTTTTGAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTCCTTGAAATGAATGATGACTTGACGAAGATGCGTCAGGCCACAGCACAAGTATTGGCATCTCAAAAACGGTTGGAAAATAAGTATAAAGCTGCGCAACAAGCTTCTGAGGAATGGTACCGAAAAGCACAATTAGCTCTTAAAAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAATTCTTTGAAGACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGCTTTTAGAGAACAAGATACAAGAAGCAAGGTCGAAAAAAGATACCCTCAAAGCACGTGCTCAGTCTGCAAAGACTGCTAATAAAGTGAGTGAGATGGTGGGGAATGTTAATACAAGTAGTGCCCTTTCCGCTTTTGAAAAGATGGAAGAGAAAGTCTTAACACTGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGATGATCTAGAAGGAAAGTTTGCAATGCTAGAGAGCTCTTCTGTTGATGATGATCTTGCAAACTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGAGCTTCCGGCTGGAAGAACTGTTGCTCCATCGAACAAGGCATATCCATTTAAGGATTCTGAGATTGAGATGGAGCTTAATGAATTAAGACGGAAAGCCAAGGACTTCTAG

Protein Analysis

340

Amino Acids

37.41

Weight (kDa)

9.59

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PspA_IM30 PF04012 83 - 296 2.4e-53 PspA/IM30 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
Acc16I TGCGCA 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 236, 456
AccBSI CCGCTC 1 cut(s) 155
AccII CGCG 2 cut(s) 56, 131
AciI CCGC 5 cut(s) 54, 131, 155, 536, 741
AclWI GGATC 2 cut(s) 308, 504
AcoI YGGCCR 2 cut(s) 3, 799
AcuI CTGAAG 1 cut(s) 536
AcvI CACGTG 2 cut(s) 506, 668
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 458
AgsI TTSAA 8 cut(s) 173, 277, 311, 347, 556, 749, 880, 903
AloI GAACNNNNNNTCC 2 cut(s) 922, 954
Alw21I GWGCWC 4 cut(s) 163, 232, 673, 851
Alw26I GTCTC 4 cut(s) 110, 115, 196, 604
AlwI GGATC 2 cut(s) 308, 504
AoxI GGCC 4 cut(s) 3, 132, 378, 799
ApeKI GCWGC 1 cut(s) 431
Asp718I GGTACC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 436
BaeGI GKGCMC 2 cut(s) 241, 736
BalI TGGCCA 2 cut(s) 5, 801
BanI GGYRCC 2 cut(s) 236, 456
BanII GRGCYC 2 cut(s) 163, 851
BbrPI CACGTG 2 cut(s) 506, 668
BbsI GAAGAC 2 cut(s) 51, 563
Bbv12I GWGCWC 4 cut(s) 163, 232, 673, 851
BbvI GCAGC 1 cut(s) 418
BccI CCATC 4 cut(s) 700, 748, 949, 976
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 4 cut(s) 110, 115, 196, 604
BfaI CTAG 4 cut(s) 267, 821, 842, 1021
BfmI CTRYAG 1 cut(s) 810
BisI GCNGC 2 cut(s) 132, 432
BlsI GCNGC 2 cut(s) 133, 433
BmiI GGNNCC 2 cut(s) 238, 458
BmsI GCATC 2 cut(s) 360, 407
BpiI GAAGAC 2 cut(s) 51, 563
BsaAI YACGTR 2 cut(s) 506, 668
BsaBI GATNNNNATC 1 cut(s) 864
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 1011
BsaXI ACNNNNNCTCC 2 cut(s) 922, 952
Bse1I ACTGG 3 cut(s) 102, 780, 802
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 1 cut(s) 864
BseDI CCNNGG 1 cut(s) 1011
BseGI GGATG 1 cut(s) 92
BseJI GATNNNNATC 1 cut(s) 864
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 5 cut(s) 155, 309, 438, 686, 963
BseNI ACTGG 3 cut(s) 102, 780, 802
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 2 cut(s) 241, 736
BseXI GCAGC 1 cut(s) 418
Bsh1236I CGCG 2 cut(s) 56, 131
BshFI GGCC 4 cut(s) 5, 134, 380, 801
BshNI GGYRCC 2 cut(s) 236, 456
BsiHKAI GWGCWC 4 cut(s) 163, 232, 673, 851
BsiSI CCGG 1 cut(s) 920
BsmAI GTCTC 4 cut(s) 110, 115, 196, 604
BsnI GGCC 4 cut(s) 5, 134, 380, 801
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 6 cut(s) 163, 232, 241, 673, 736, 851
Bsp143I GATC 6 cut(s) 256, 313, 496, 568, 817, 865
BspACI CCGC 5 cut(s) 54, 131, 155, 536, 741
BspANI GGCC 4 cut(s) 5, 134, 380, 801
BspCNI CTCAG 5 cut(s) 156, 310, 439, 685, 964
BspFNI CGCG 2 cut(s) 56, 131
BspLI GGNNCC 2 cut(s) 238, 458
BspPI GGATC 2 cut(s) 308, 504
BspQI GCTCTTC 1 cut(s) 856
BspT107I GGYRCC 2 cut(s) 236, 456
BspTNI GGTCTC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 3 cut(s) 102, 780, 802
BssECI CCNNGG 1 cut(s) 1011
BssMI GATC 6 cut(s) 256, 313, 496, 568, 817, 865
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 1011
Bst4CI ACNGT 3 cut(s) 411, 891, 934
Bst6I CTCTTC 4 cut(s) 79, 512, 753, 856
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 686
BstBAI YACGTR 2 cut(s) 506, 668
BstC8I GCNNGC 2 cut(s) 54, 336
BstDEI CTNAG 5 cut(s) 164, 318, 447, 672, 972
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 2 cut(s) 56, 131
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 6 cut(s) 259, 316, 499, 571, 820, 868
BstMAI GTCTC 4 cut(s) 110, 115, 196, 604
BstMBI GATC 6 cut(s) 256, 313, 496, 568, 817, 865
BstMWI GCNNNNNNNGC 8 cut(s) 236, 440, 473, 509, 542, 677, 686, 740
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 2 cut(s) 241, 736
BstUI CGCG 2 cut(s) 56, 131
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 2 cut(s) 51, 563
BstX2I RGATCY 2 cut(s) 313, 496
BstYI RGATCY 2 cut(s) 313, 496
BsuRI GGCC 4 cut(s) 5, 134, 380, 801
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 773
Cac8I GCNNGC 2 cut(s) 54, 336
CfoI GCGC 1 cut(s) 436
CseI GACGC 3 cut(s) 30, 45, 362
Csp6I GTAC 1 cut(s) 457
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 5 cut(s) 164, 318, 447, 672, 972
DpnI GATC 6 cut(s) 258, 315, 498, 570, 819, 867
DpnII GATC 6 cut(s) 256, 313, 496, 568, 817, 865
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 3, 799
Eam1104I CTCTTC 4 cut(s) 79, 512, 753, 856
EarI CTCTTC 4 cut(s) 79, 512, 753, 856
Ecl136II GAGCTC 2 cut(s) 161, 849
Eco130I CCWWGG 1 cut(s) 1011
Eco24I GRGCYC 2 cut(s) 163, 851
Eco31I GGTCTC 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 161, 849
Eco57I CTGAAG 1 cut(s) 536
Eco72I CACGTG 2 cut(s) 506, 668
EcoICRI GAGCTC 2 cut(s) 161, 849
EcoT14I CCWWGG 1 cut(s) 1011
EcoT38I GRGCYC 2 cut(s) 163, 851
ErhI CCWWGG 1 cut(s) 1011
FaiI YATR 9 cut(s) 113, 198, 207, 245, 283, 285, 299, 426, 955
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 900, 932
FauI CCCGC 2 cut(s) 61, 148
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 2 cut(s) 132, 432
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 163, 851
Fsp4HI GCNGC 2 cut(s) 132, 432
FspBI CTAG 4 cut(s) 267, 821, 842, 1021
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 132, 432
HaeIII GGCC 4 cut(s) 5, 134, 380, 801
HapII CCGG 1 cut(s) 920
HgaI GACGC 3 cut(s) 30, 45, 362
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 41
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 2 cut(s) 45, 807
HindII GTYRAC 2 cut(s) 45, 807
HindIII AAGCTT 2 cut(s) 441, 611
HinfI GANTC 3 cut(s) 559, 779, 968
HpaI GTTAAC 1 cut(s) 807
HpaII CCGG 1 cut(s) 920
Hpy166II GTNNAC 2 cut(s) 45, 807
Hpy188I TCNGA 4 cut(s) 165, 448, 516, 973
Hpy188III TCNNGA 3 cut(s) 118, 317, 821
Hpy8I GTNNAC 2 cut(s) 45, 807
HpyAV CCTTC 3 cut(s) 148, 201, 818
HpyCH4III ACNGT 3 cut(s) 411, 891, 934
HpyCH4IV ACGT 3 cut(s) 220, 505, 667
HpyCH4V TGCA 6 cut(s) 287, 293, 503, 680, 836, 872
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 440, 473, 509, 542, 677, 686, 740
HpyF3I CTNAG 5 cut(s) 164, 318, 447, 672, 972
HpySE526I ACGT 3 cut(s) 220, 505, 667
Hsp92I GRCGYC 1 cut(s) 41
HspAI GCGC 1 cut(s) 434
KpnI GGTACC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 568
KspAI GTTAAC 1 cut(s) 807
Kzo9I GATC 6 cut(s) 256, 313, 496, 568, 817, 865
LguI GCTCTTC 1 cut(s) 856
LmnI GCTCC 6 cut(s) 152, 158, 193, 331, 943, 985
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 2 cut(s) 360, 407
MaeI CTAG 4 cut(s) 267, 821, 842, 1021
MaeII ACGT 3 cut(s) 220, 505, 667
MalI GATC 6 cut(s) 258, 315, 498, 570, 819, 867
MbiI CCGCTC 1 cut(s) 155
MboI GATC 6 cut(s) 256, 313, 496, 568, 817, 865
MflI RGATCY 2 cut(s) 313, 496
MhlI GDGCHC 6 cut(s) 163, 232, 241, 673, 736, 851
MlsI TGGCCA 2 cut(s) 5, 801
MluCI AATT 3 cut(s) 470, 547, 995
MluNI TGGCCA 2 cut(s) 5, 801
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 2 cut(s) 5, 801
MscI TGGCCA 2 cut(s) 5, 801
MseI TTAA 8 cut(s) 144, 480, 720, 770, 806, 963, 990, 998
Msp20I TGGCCA 2 cut(s) 5, 801
MspI CCGG 1 cut(s) 920
MvnI CGCG 2 cut(s) 56, 131
MwoI GCNNNNNNNGC 8 cut(s) 236, 440, 473, 509, 542, 677, 686, 740
NdeI CATATG 1 cut(s) 283
NdeII GATC 6 cut(s) 256, 313, 496, 568, 817, 865
NlaIV GGNNCC 2 cut(s) 238, 458
NsbI TGCGCA 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 856
PfeI GAWTC 2 cut(s) 779, 968
PkrI GCNGC 2 cut(s) 133, 433
PleI GAGTC 1 cut(s) 553
PmaCI CACGTG 2 cut(s) 506, 668
PmlI CACGTG 2 cut(s) 506, 668
PpsI GAGTC 1 cut(s) 553
Ppu21I YACGTR 2 cut(s) 506, 668
Psp124BI GAGCTC 2 cut(s) 163, 851
PspCI CACGTG 2 cut(s) 506, 668
PspN4I GGNNCC 2 cut(s) 238, 458
PsuI RGATCY 2 cut(s) 313, 496
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 2 cut(s) 163, 851
SapI GCTCTTC 1 cut(s) 856
SaqAI TTAA 8 cut(s) 144, 480, 720, 770, 806, 963, 990, 998
SatI GCNGC 2 cut(s) 132, 432
Sau3AI GATC 6 cut(s) 256, 313, 496, 568, 817, 865
SchI GAGTC 1 cut(s) 553
SduI GDGCHC 6 cut(s) 163, 232, 241, 673, 736, 851
SfaNI GCATC 2 cut(s) 360, 407
SfcI CTRYAG 1 cut(s) 810
Sse9I AATT 3 cut(s) 470, 547, 995
SsiI CCGC 5 cut(s) 54, 131, 155, 536, 741
SspMI CTAG 4 cut(s) 267, 821, 842, 1021
SstI GAGCTC 2 cut(s) 163, 851
StyI CCWWGG 1 cut(s) 1011
TaaI ACNGT 3 cut(s) 411, 891, 934
TaiI ACGT 3 cut(s) 223, 508, 670
TaqI TCGA 2 cut(s) 644, 944
TasI AATT 3 cut(s) 470, 547, 995
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 779, 968
Tru1I TTAA 8 cut(s) 144, 480, 720, 770, 806, 963, 990, 998
Tru9I TTAA 8 cut(s) 144, 480, 720, 770, 806, 963, 990, 998
TscAI CASTG 1 cut(s) 780
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 5 cut(s) 51, 72, 260, 365, 1008
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 1 cut(s) 780
XbaI TCTAGA 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 4 cut(s) 267, 821, 842, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.