RLG00000019093

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010298
Physical Location & Seq
Forward (+)
46222127 .. 46226768
4642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019093

Sequence Viewer

Length: 1035 bp
ATGGCAATTCTGAACTACTATCTCTCAGTGACCTCCACAGCAACACCCATTTCTCCGGACTCATCATCATCATCAGCAAGCCAACCCGTGCCCGACCCGAGACAGAGCAAGATCCTACTGCCCAAGAAGAAGCCCCAGAAATGGTCCACTGGGATGGCTCCCGGCGAGTACGGTGGCCCACCAACCACCACGAAGCTCCGCAAGTACTGGGGAGGCGATGTGGACCCACTTGAATCCAATGACTTCATGTGGAACAAAGAATTCATGGACCGCATGAAGAAACTGATTCAGGACTCTGATGACACTTCCACCCAAGTTGCTCCTGCGAAGGAAGTGCCTTCTGGGTTTCTTAGCTTGAATAGGGTCATGAGTCTCGACAGTCTAGAAGTTGATTTGAGCAAACAACTCACAGCTTCTCCTGCCCAGCCTGAGTTACAACAGCATGTTAAGGCCACACCGCAAAGTTTGAAAAGCACTGCTATTAAATGGAGACACGCACCAACACGACGTGAACAAGATAAATGGGCCAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAAGCAAGGCGCTCAAAGGAGGACCCAAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTCAAGTTAAAGAAGAGATTGCAAGTACTTACACTGGGTATAGGAGGTGTTGGATTAGTTTCAGCTTATGTTTCATATTCCCCTGAAATTGCAGCTAGCTATGGTGTTGGGTTCCTTGGTTCTCTGGCTTACATGCGTATGCTAGGGACTAGTGTGGATTCCATGGCAGATGGAGCAAGAGGACTTCTCAAGGGAGCCATTGGTCAACCAAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACAGGTGGAATGGGATCGTTGTTCCACAATATGGATTCATGCACCTGGAATTGATACCAATGTTGGTGGGATTCTTCACATATAAAATTGCTACTTTTATCCAAGCTATAGAGGAAGCAATTCCTCAAGTTGAGAAAATAGATACAAGTTCATGA

Protein Analysis

345

Amino Acids

38.03

Weight (kDa)

9.55

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 199 - 331 3.5e-73 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 911
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 199, 271, 458
AclWI GGATC 2 cut(s) 106, 902
AcsI RAATTY 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 3 cut(s) 170, 206, 660
AfiI CCNNNNNNNGG 2 cut(s) 141, 911
AgsI TTSAA 4 cut(s) 233, 358, 469, 637
AhlI ACTAGT 1 cut(s) 782
AjiI CACGTC 1 cut(s) 509
AjnI CCWGG 1 cut(s) 924
AluBI AGCT 8 cut(s) 196, 354, 413, 611, 698, 728, 732, 986
AluI AGCT 8 cut(s) 196, 354, 413, 611, 698, 728, 732, 986
Alw26I GTCTC 3 cut(s) 94, 377, 484
AlwI GGATC 2 cut(s) 106, 902
Ama87I CYCGRG 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 175, 450, 525
ApeKI GCWGC 2 cut(s) 542, 725
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 999
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 6 cut(s) 144, 176, 223, 268, 525, 595
AsuC2I CCSGG 1 cut(s) 162
AsuNHI GCTAGC 1 cut(s) 728
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 4 cut(s) 144, 223, 268, 595
BaeGI GKGCMC 1 cut(s) 93
BaeI ACNNNNGTAYC 2 cut(s) 926, 959
BbvI GCAGC 2 cut(s) 529, 737
BccI CCATC 2 cut(s) 148, 797
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BciT130I CCWGG 1 cut(s) 926
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 94, 377, 484
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 4 cut(s) 383, 729, 776, 783
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 586
BisI GCNGC 2 cut(s) 543, 726
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 2 cut(s) 544, 727
BmcAI AGTACT 2 cut(s) 206, 660
Bme1390I CCNGG 2 cut(s) 162, 926
Bme18I GGWCC 4 cut(s) 144, 223, 268, 595
BmeT110I CYCGRG 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 509
BmgT120I GGNCC 6 cut(s) 144, 176, 223, 268, 525, 595
BmiI GGNNCC 6 cut(s) 159, 225, 597, 746, 829, 855
BmrFI CCNGG 2 cut(s) 162, 926
BmrI ACTGGG 3 cut(s) 159, 217, 677
BmtI GCTAGC 1 cut(s) 732
BmuI ACTGGG 3 cut(s) 159, 217, 677
BplI GAGNNNNNCTC 2 cut(s) 804, 836
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 806, 990
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 748, 795, 842
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 204, 234, 400, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 911
Bse1I ACTGG 4 cut(s) 154, 212, 553, 672
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 926
BseDI CCNNGG 3 cut(s) 748, 795, 842
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 141, 911
BseMII CTCAG 3 cut(s) 39, 420, 603
BseNI ACTGG 4 cut(s) 154, 212, 553, 672
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 529, 737
BseYI CCCAGC 1 cut(s) 423
BshFI GGCC 3 cut(s) 177, 452, 527
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 56, 162
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 2 cut(s) 141, 911
BsmAI GTCTC 3 cut(s) 94, 377, 484
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 3 cut(s) 177, 452, 527
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 111, 894
Bsp1720I GCTNAGC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 795
BspACI CCGC 3 cut(s) 199, 271, 458
BspANI GGCC 3 cut(s) 177, 452, 527
BspCNI CTCAG 3 cut(s) 38, 421, 604
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 3 cut(s) 366, 870, 1031
BspLI GGNNCC 6 cut(s) 159, 225, 597, 746, 829, 855
BspOI GCTAGC 1 cut(s) 732
BspPI GGATC 2 cut(s) 106, 902
BsrI ACTGG 4 cut(s) 154, 212, 553, 672
BssECI CCNNGG 3 cut(s) 748, 795, 842
BssMI GATC 2 cut(s) 111, 894
BssT1I CCWWGG 3 cut(s) 748, 795, 842
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 2 cut(s) 173, 380
Bst6I CTCTTC 1 cut(s) 641
BstC8I GCNNGC 2 cut(s) 79, 730
BstDEI CTNAG 5 cut(s) 25, 350, 429, 537, 612
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 2 cut(s) 114, 897
BstMAI GTCTC 3 cut(s) 94, 377, 484
BstMBI GATC 2 cut(s) 111, 894
BstMWI GCNNNNNNNGC 3 cut(s) 419, 539, 806
BstNI CCWGG 1 cut(s) 926
BstNSI RCATGY 2 cut(s) 446, 769
BstSCI CCNGG 2 cut(s) 160, 924
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 529, 737
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 3 cut(s) 177, 452, 527
BtgI CCRYGG 1 cut(s) 795
BtgZI GCGATG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 509
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 2 cut(s) 474, 562
BtsIMutI CAGTG 5 cut(s) 33, 147, 474, 562, 665
Cac8I GCNNGC 2 cut(s) 79, 730
CciI TCATGA 3 cut(s) 366, 870, 1031
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 6 cut(s) 144, 176, 223, 268, 525, 595
Csp6I GTAC 3 cut(s) 169, 205, 659
CspCI CAANNNNNGTGG 4 cut(s) 298, 333, 927, 962
CviQI GTAC 3 cut(s) 169, 205, 659
DdeI CTNAG 5 cut(s) 25, 350, 429, 537, 612
DpnI GATC 2 cut(s) 113, 896
DpnII GATC 2 cut(s) 111, 894
DraIII CACNNNGTG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 3 cut(s) 748, 795, 842
Eco47I GGWCC 4 cut(s) 144, 223, 268, 595
Eco88I CYCGRG 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 3 cut(s) 748, 795, 842
ErhI CCWWGG 3 cut(s) 748, 795, 842
FaqI GGGAC 1 cut(s) 793
Fnu4HI GCNGC 2 cut(s) 543, 726
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 543, 726
FspBI CTAG 4 cut(s) 383, 729, 776, 783
GlaI GCGC 1 cut(s) 584
GluI GCNGC 2 cut(s) 543, 726
GsaI CCCAGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 586
HaeIII GGCC 3 cut(s) 177, 452, 527
HapII CCGG 2 cut(s) 56, 162
HhaI GCGC 1 cut(s) 585
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HincII GTYRAC 1 cut(s) 839
HindII GTYRAC 1 cut(s) 839
HinfI GANTC 8 cut(s) 59, 233, 286, 293, 370, 791, 915, 951
HpaII CCGG 2 cut(s) 56, 162
Hpy166II GTNNAC 4 cut(s) 147, 223, 512, 839
Hpy188I TCNGA 2 cut(s) 12, 298
Hpy188III TCNNGA 8 cut(s) 56, 290, 367, 374, 383, 572, 871, 1032
Hpy8I GTNNAC 4 cut(s) 147, 223, 512, 839
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 2 cut(s) 322, 348
HpyCH4III ACNGT 2 cut(s) 173, 380
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 4 cut(s) 545, 655, 725, 922
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 539, 806
HpyF3I CTNAG 5 cut(s) 25, 350, 429, 537, 612
HpySE526I ACGT 1 cut(s) 508
HspAI GCGC 1 cut(s) 583
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 111, 894
LmnI GCTCC 5 cut(s) 163, 201, 325, 806, 827
Lsp1109I GCAGC 2 cut(s) 529, 737
MaeI CTAG 4 cut(s) 383, 729, 776, 783
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 28, 432
MalI GATC 2 cut(s) 113, 896
MboI GATC 2 cut(s) 111, 894
MboII GAAGA 4 cut(s) 139, 289, 658, 946
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 6 cut(s) 6, 260, 720, 929, 966, 999
MlyI GAGTC 3 cut(s) 53, 287, 379
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 8 cut(s) 43, 206, 545, 586, 671, 806, 985, 1014
MroI TCCGGA 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 4 cut(s) 447, 483, 641, 879
MslI CAYNNNNRTG 2 cut(s) 152, 770
MspI CCGG 2 cut(s) 56, 162
MspR9I CCNGG 2 cut(s) 162, 926
MvaI CCWGG 1 cut(s) 926
MwoI GCNNNNNNNGC 3 cut(s) 419, 539, 806
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 795
NdeII GATC 2 cut(s) 111, 894
NheI GCTAGC 1 cut(s) 728
NlaIV GGNNCC 6 cut(s) 159, 225, 597, 746, 829, 855
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 2 cut(s) 446, 769
PagI TCATGA 3 cut(s) 366, 870, 1031
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 5 cut(s) 233, 286, 791, 915, 951
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 2 cut(s) 544, 727
PleI GAGTC 3 cut(s) 53, 287, 378
PpsI GAGTC 3 cut(s) 53, 287, 378
PpuMI RGGWCCY 1 cut(s) 595
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 924
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 6 cut(s) 159, 225, 597, 746, 829, 855
PspPI GGNCC 6 cut(s) 144, 176, 223, 268, 525, 595
PspPPI RGGWCCY 1 cut(s) 595
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 3 cut(s) 170, 206, 660
RsaNI GTAC 3 cut(s) 169, 205, 659
RseI CAYNNNNRTG 2 cut(s) 152, 770
SaqAI TTAA 4 cut(s) 447, 483, 641, 879
SatI GCNGC 2 cut(s) 543, 726
Sau3AI GATC 2 cut(s) 111, 894
Sau96I GGNCC 6 cut(s) 144, 176, 223, 268, 525, 595
ScaI AGTACT 2 cut(s) 206, 660
SchI GAGTC 3 cut(s) 53, 287, 379
ScrFI CCNGG 2 cut(s) 162, 926
SduI GDGCHC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 4 cut(s) 144, 223, 268, 595
SmiMI CAYNNNNRTG 2 cut(s) 152, 770
SmlI CTYRAG 2 cut(s) 821, 1005
SmoI CTYRAG 2 cut(s) 821, 1005
SpeI ACTAGT 1 cut(s) 782
Sse9I AATT 6 cut(s) 6, 260, 720, 929, 966, 999
SsiI CCGC 3 cut(s) 199, 271, 458
SspMI CTAG 4 cut(s) 383, 729, 776, 783
StyD4I CCNGG 2 cut(s) 160, 924
StyI CCWWGG 3 cut(s) 748, 795, 842
TaaI ACNGT 2 cut(s) 173, 380
TaiI ACGT 1 cut(s) 511
TaqI TCGA 1 cut(s) 375
TasI AATT 6 cut(s) 6, 260, 720, 929, 966, 999
TatI WGTACW 2 cut(s) 204, 658
TfiI GAWTC 5 cut(s) 233, 286, 791, 915, 951
Tru1I TTAA 4 cut(s) 447, 483, 641, 879
Tru9I TTAA 4 cut(s) 447, 483, 641, 879
TscAI CASTG 5 cut(s) 33, 154, 481, 562, 672
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 542, 725
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 6 cut(s) 235, 253, 290, 696, 907, 1020
TspRI CASTG 5 cut(s) 33, 154, 481, 562, 672
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 4 cut(s) 144, 223, 268, 595
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 2 cut(s) 446, 769
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 4 cut(s) 383, 729, 776, 783
ZrmI AGTACT 2 cut(s) 206, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.