Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010298

Physical Location & Seq

Genomic Coordinates Reverse (-)

10188093 .. 10192640

Gene Structure 4548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAATTCTGAACCACTGTCTCTCAGTGACCTCCACAGCAACACCCATCTCCCCAGACTCAGCAACTCCACCTGTACCAGACCCAAGACAGACCAAGATCCTATTGCCCAAGAAGAAGCCCATGAAATGGTCCACTGGGGTAGCTCCAGGGGAGTATGGTGGCCCACCAACCACAACCAAGCTCCGAAAGTACTGGGGAGGCGAAGATGACCCGCTTACCTCTGATGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGACCCTGACTCTTCCACTCAAGCCACTACTGTTCAGGAAAAGCCTTCTGGGTTTCTTAGCTTGAATAGAGTCATGACTCTTGACAGTTTAGAAGTTGATTTCAGCAAAGAACTCACTGCTTCTCCTGCCCAGCCCAAGATAGAACCTGTTGAGGCTCCAGCACAAAGTGCCAGCAGCACTAGTATCAAATGGAAATTGGCACCAACACGGCGTGAGCAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGCTCTCAGGAGGACCCAAAAGTATTGGCTGAACAGTATAGGAAACAGTATTTTAAGTTAAAGAAGAGGTTGCAATTCCTTACACTAGGTTTAGGCGGTGTTGGGTTAGTCTCAGCTTATGTTTCATATTCCCCTGAAATTGCAGCTAGCTATGGTGTTGGGTTGCTTGGTTCTGTGGCTTACATGCGTATGCTGGGGAGTAGCGTGGATTCCATGGCAGATGGAGCAAGGGGACTTCTCAAGGGAGCGATTGGGCAACCGAGGCTATTGGTTCCTGTTGTACTAGTCATGATCTTTAACAGGTGGAATGGGCTCGTCGTTCCACAATATGGATTTATGCAACTGGAATTGATACCAATGTTAGTGGGATTCTTCACATACAAGATTGCTACTTTTATCCAAGCTATAGAGGAAGCACTTCCTGTAGCTGAGAAAACAGACACAAGTTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0033614 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.34

Weight (kDa)

9.17

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31040
fragaria_vesca	FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica	MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica	Prupe.3G118500_v2.0.a1
pyrus_communis	pycom09g15650 pycom17g23410
rosa_chinensis	RchiOBHm_Chr2g0129651
rosa_laevigata	RLG00000019093
rosa_multiflora	Rmu_sc0020548.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114480
rosa_rugosa	Rorug02G0288100 Rorug02G0288100
rosa_samantha	Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana	Rw2G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	2 cut(s)	129, 893
AciI	CCGC	3 cut(s)	215, 259, 660
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	248
AdeI	CACNNNGTG	2 cut(s)	446, 491
AfaI	GTAC	3 cut(s)	78, 194, 846
AfiI	CCNNNNNNNGG	2 cut(s)	129, 893
AgsI	TTSAA	2 cut(s)	343, 1014
AhlI	ACTAGT	2 cut(s)	458, 847
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	9 cut(s)	146, 184, 339, 680, 710, 714, 968, 992, 1017
AluI	AGCT	9 cut(s)	146, 184, 339, 680, 710, 714, 968, 992, 1017
Alw26I	GTCTC	2 cut(s)	26, 679
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	453, 524, 707
ApoI	RAATTY	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	981
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	5 cut(s)	132, 164, 256, 280, 577
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	4 cut(s)	132, 256, 280, 577
BaeI	ACNNNNGTAYC	2 cut(s)	908, 941
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	879
BbvI	GCAGC	3 cut(s)	465, 511, 719
BccI	CCATC	2 cut(s)	56, 779
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	26, 679
BcuI	ACTAGT	2 cut(s)	458, 847
BfaI	CTAG	4 cut(s)	459, 650, 711, 848
BfmI	CTRYAG	2 cut(s)	969, 987
BfoI	RGCGCY	1 cut(s)	568
BisI	GCNGC	3 cut(s)	454, 525, 708
BlsI	GCNGC	3 cut(s)	455, 526, 709
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	4 cut(s)	132, 256, 280, 577
BmgT120I	GGNCC	5 cut(s)	132, 164, 256, 280, 577
BmiI	GGNNCC	5 cut(s)	282, 435, 480, 579, 837
BmrFI	CCNGG	1 cut(s)	150
BmrI	ACTGGG	2 cut(s)	147, 205
BmtI	GCTAGC	1 cut(s)	714
BmuI	ACTGGG	2 cut(s)	147, 205
BpmI	CTGGAG	3 cut(s)	132, 420, 552
BpuEI	CTTGAG	2 cut(s)	282, 788
BsaJI	CCNNGG	3 cut(s)	149, 777, 824
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 893
Bse1I	ACTGG	4 cut(s)	142, 200, 535, 912
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	149, 777, 824
BseLI	CCNNNNNNNGG	2 cut(s)	129, 893
BseMII	CTCAG	5 cut(s)	39, 75, 584, 690, 984
BseNI	ACTGG	4 cut(s)	142, 200, 535, 912
BseXI	GCAGC	3 cut(s)	465, 511, 719
BseYI	CCCAGC	2 cut(s)	408, 757
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	810
BslI	CCNNNNNNNGG	2 cut(s)	129, 893
BsmAI	GTCTC	2 cut(s)	26, 679
BsmFI	GGGAC	1 cut(s)	810
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	2 cut(s)	99, 855
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	3 cut(s)	215, 259, 660
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	5 cut(s)	38, 74, 583, 689, 985
BspHI	TCATGA	2 cut(s)	351, 852
BspLI	GGNNCC	5 cut(s)	282, 435, 480, 579, 837
BspOI	GCTAGC	1 cut(s)	714
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	478
BsrI	ACTGG	4 cut(s)	142, 200, 535, 912
BssECI	CCNNGG	3 cut(s)	149, 777, 824
BssMI	GATC	2 cut(s)	99, 855
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	5 cut(s)	20, 310, 365, 600, 612
Bst6I	CTCTTC	2 cut(s)	295, 623
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	451, 712
BstDEI	CTNAG	7 cut(s)	25, 61, 335, 519, 570, 676, 993
BstDSI	CCRYGG	1 cut(s)	777
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	102, 858
BstMAI	GTCTC	2 cut(s)	26, 679
BstMBI	GATC	2 cut(s)	99, 855
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 446, 521, 788, 826
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	969, 987
BstV1I	GCAGC	3 cut(s)	465, 511, 719
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	777
BtsI	GCAGTG	2 cut(s)	393, 544
BtsIMutI	CAGTG	5 cut(s)	16, 33, 135, 393, 544
Cac8I	GCNNGC	2 cut(s)	451, 712
CciI	TCATGA	2 cut(s)	351, 852
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	5 cut(s)	132, 164, 256, 280, 577
Csp6I	GTAC	3 cut(s)	77, 193, 845
CspCI	CAANNNNNGTGG	4 cut(s)	485, 520, 909, 944
CviAII	CATG	7 cut(s)	124, 253, 262, 352, 748, 778, 853
CviQI	GTAC	3 cut(s)	77, 193, 845
DdeI	CTNAG	7 cut(s)	25, 61, 335, 519, 570, 676, 993
DpnI	GATC	2 cut(s)	101, 857
DpnII	GATC	2 cut(s)	99, 855
DraIII	CACNNNGTG	2 cut(s)	446, 491
Eam1104I	CTCTTC	2 cut(s)	295, 623
EarI	CTCTTC	2 cut(s)	295, 623
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	879
Eco47I	GGWCC	4 cut(s)	132, 256, 280, 577
EcoO109I	RGGNCCY	2 cut(s)	280, 577
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	7 cut(s)	127, 256, 265, 355, 751, 781, 856
FaqI	GGGAC	1 cut(s)	810
FatI	CATG	7 cut(s)	123, 252, 261, 351, 747, 777, 852
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	454, 525, 708
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	3 cut(s)	454, 525, 708
FspBI	CTAG	4 cut(s)	459, 650, 711, 848
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	3 cut(s)	454, 525, 708
GsaI	CCCAGC	2 cut(s)	412, 761
GsuI	CTGGAG	3 cut(s)	132, 420, 552
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	7 cut(s)	127, 256, 265, 355, 751, 781, 856
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HinfI	GANTC	6 cut(s)	59, 287, 348, 355, 773, 933
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	12, 188, 226
Hpy188III	TCNNGA	7 cut(s)	278, 314, 352, 359, 554, 572, 853
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	5 cut(s)	20, 310, 365, 600, 612
HpyCH4V	TGCA	4 cut(s)	527, 637, 707, 904
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 446, 521, 788, 826
HpyF3I	CTNAG	7 cut(s)	25, 61, 335, 519, 570, 676, 993
Hsp92II	CATG	7 cut(s)	127, 256, 265, 355, 751, 781, 856
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	99, 855
LmnI	GCTCC	5 cut(s)	151, 189, 439, 788, 809
Lsp1109I	GCAGC	3 cut(s)	465, 511, 719
MaeI	CTAG	4 cut(s)	459, 650, 711, 848
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	101, 857
MboI	GATC	2 cut(s)	99, 855
MboII	GAAGA	5 cut(s)	127, 218, 282, 640, 928
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	7 cut(s)	6, 248, 473, 557, 638, 702, 911
MlyI	GAGTC	4 cut(s)	53, 281, 349, 357
MnlI	CCTC	9 cut(s)	43, 194, 232, 424, 527, 568, 624, 819, 967
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	4 cut(s)	560, 618, 623, 861
MslI	CAYNNNNRTG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	5 cut(s)	404, 446, 521, 788, 826
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	2 cut(s)	99, 855
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	7 cut(s)	127, 256, 265, 355, 751, 781, 856
NlaIV	GGNNCC	5 cut(s)	282, 435, 480, 579, 837
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	751
PagI	TCATGA	2 cut(s)	351, 852
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	2 cut(s)	773, 933
PflMI	CCANNNNNTGG	2 cut(s)	129, 893
PkrI	GCNGC	3 cut(s)	455, 526, 709
PleI	GAGTC	4 cut(s)	53, 281, 349, 356
PpsI	GAGTC	4 cut(s)	53, 281, 349, 356
PpuMI	RGGWCCY	2 cut(s)	280, 577
Psp5II	RGGWCCY	2 cut(s)	280, 577
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	2 cut(s)	408, 757
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	5 cut(s)	282, 435, 480, 579, 837
PspPI	GGNCC	5 cut(s)	132, 164, 256, 280, 577
PspPPI	RGGWCCY	2 cut(s)	280, 577
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	3 cut(s)	78, 194, 846
RsaNI	GTAC	3 cut(s)	77, 193, 845
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	560, 618, 623, 861
SatI	GCNGC	3 cut(s)	454, 525, 708
Sau3AI	GATC	2 cut(s)	99, 855
Sau96I	GGNCC	5 cut(s)	132, 164, 256, 280, 577
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	4 cut(s)	53, 281, 349, 357
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	879
SfcI	CTRYAG	2 cut(s)	969, 987
SinI	GGWCC	4 cut(s)	132, 256, 280, 577
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	297, 803
SmoI	CTYRAG	2 cut(s)	297, 803
SpeI	ACTAGT	2 cut(s)	458, 847
Sse9I	AATT	7 cut(s)	6, 248, 473, 557, 638, 702, 911
SsiI	CCGC	3 cut(s)	215, 259, 660
SspMI	CTAG	4 cut(s)	459, 650, 711, 848
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	5 cut(s)	20, 310, 365, 600, 612
TasI	AATT	7 cut(s)	6, 248, 473, 557, 638, 702, 911
TatI	WGTACW	2 cut(s)	192, 844
TfiI	GAWTC	2 cut(s)	773, 933
Tru1I	TTAA	4 cut(s)	560, 618, 623, 861
Tru9I	TTAA	4 cut(s)	560, 618, 623, 861
TscAI	CASTG	5 cut(s)	23, 33, 142, 400, 544
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	453, 524, 707
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	140, 223, 241, 278, 678
TspRI	CASTG	5 cut(s)	23, 33, 142, 400, 544
Van91I	CCANNNNNTGG	2 cut(s)	129, 893
VpaK11BI	GGWCC	4 cut(s)	132, 256, 280, 577
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	4 cut(s)	459, 650, 711, 848
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.