Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020548.1

Orthogroup ID

OG0010298

Physical Location & Seq

Genomic Coordinates Forward (+)

2776 .. 7850

Gene Structure 5075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020548.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggcaattctgaactactatctctcagtgacctccacagcaacacccatttctccggactcatcatcagcaagccaacccgtgcccgacccgagacagagcaagatcctactgcccaagaagaagccccagaaatggtccactgggatggctcccggcgagtacggtggcccaccaaccaccacgaagctccgcaagtactggggaggcgatgtggacccacttgaatccgatgacttcatgtggaacaaagaattcgtggaccgcatgaagaaactcattcagggccctgatgacacttccacccaagttgctcctgccaaggaagtgccttctgggtttcttagcttgaatagggtcatgagtcttgacagtctagaagttgatttgagcaaacaactcacagcttctcctgcccagcctgagttacaacagcatgttgaggctacaccgcaaagtttgaaaagcactgctattaaatggagacacgcaccaacacgacgtgagcaagataaatgggccagagcaactaaggctgcaactggaggcagtgaagtgatgtttcgggaagcaaggcgctcaaaggaggacccgaaagtagtagctgagcagtataggaagcagtatttcaagttaaagaagagattgcaagtacttacactgggtataggaggtgttggattagtttcagcttatgtttcatattcccctgaaattgcagcgagctatggtgttgggttccttggttctctggcctacatgcgtatgctagggactagtgtggattccatggcagatggagcaagaggacttctcaagggagcaattggtcaaccaaggctattggttcctgttgtattagtcatgatatttaacaggtggaatgggatcgttgttccacaatatggattcatgcacctggaattgataccaatgttgaatattccagtaatggttatgatgcagcttgcaaagattacagataatggttgcagttgtgacatgctgcttggaaaggaagaggtgtatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0033614 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

38.01

Weight (kDa)

9.34

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31040
fragaria_vesca	FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica	MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica	Prupe.3G118500_v2.0.a1
pyrus_communis	pycom09g15650 pycom17g23410
rosa_chinensis	RchiOBHm_Chr2g0129651
rosa_laevigata	RLG00000019093
rosa_multiflora	Rmu_sc0020548.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114480
rosa_rugosa	Rorug02G0288100 Rorug02G0288100
rosa_samantha	Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana	Rw2G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	193, 265, 452
AclWI	GGATC	2 cut(s)	100, 896
AcsI	RAATTY	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	164, 200, 654
AfiI	CCNNNNNNNGG	2 cut(s)	135, 905
AgsI	TTSAA	5 cut(s)	227, 352, 463, 631, 940
AhlI	ACTAGT	1 cut(s)	776
AjiI	CACGTC	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	918
AluBI	AGCT	7 cut(s)	190, 348, 407, 605, 692, 726, 967
AluI	AGCT	7 cut(s)	190, 348, 407, 605, 692, 726, 967
Alw26I	GTCTC	2 cut(s)	88, 478
AlwI	GGATC	2 cut(s)	100, 896
Ama87I	CYCGRG	1 cut(s)	91
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	4 cut(s)	169, 286, 519, 753
ApaI	GGGCCC	1 cut(s)	290
ApeKI	GCWGC	4 cut(s)	536, 719, 964, 1006
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	8 cut(s)	138, 170, 217, 262, 286, 287, 519, 589
AsuC2I	CCSGG	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	4 cut(s)	138, 217, 262, 589
BaeGI	GKGCMC	2 cut(s)	87, 290
BaeI	ACNNNNGTAYC	2 cut(s)	920, 953
BanII	GRGCYC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	523, 731, 976, 993
BccI	CCATC	2 cut(s)	142, 791
BciT130I	CCWGG	1 cut(s)	920
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	88, 478
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	3 cut(s)	377, 770, 777
BfoI	RGCGCY	1 cut(s)	580
BisI	GCNGC	4 cut(s)	537, 720, 965, 1007
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	4 cut(s)	538, 721, 966, 1008
BmcAI	AGTACT	2 cut(s)	200, 654
Bme1390I	CCNGG	2 cut(s)	156, 920
Bme18I	GGWCC	4 cut(s)	138, 217, 262, 589
BmeT110I	CYCGRG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	503
BmgT120I	GGNCC	8 cut(s)	138, 170, 217, 262, 286, 287, 519, 589
BmiI	GGNNCC	6 cut(s)	153, 219, 288, 591, 740, 849
BmrFI	CCNGG	2 cut(s)	156, 920
BmrI	ACTGGG	3 cut(s)	153, 211, 671
BmsI	GCATC	1 cut(s)	951
BmuI	ACTGGG	3 cut(s)	153, 211, 671
BplI	GAGNNNNNCTC	2 cut(s)	798, 830
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	321, 742, 789, 836
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 905
Bse1I	ACTGG	5 cut(s)	148, 206, 547, 666, 947
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	4 cut(s)	321, 742, 789, 836
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	135, 905
BseMII	CTCAG	3 cut(s)	39, 414, 597
BseNI	ACTGG	5 cut(s)	148, 206, 547, 666, 947
BseSI	GKGCMC	2 cut(s)	87, 290
BseXI	GCAGC	4 cut(s)	523, 731, 976, 993
BseYI	CCCAGC	1 cut(s)	417
BshFI	GGCC	4 cut(s)	171, 288, 521, 755
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	56, 156
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	2 cut(s)	135, 905
BsmAI	GTCTC	2 cut(s)	88, 478
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	4 cut(s)	171, 288, 521, 755
BsoBI	CYCGRG	1 cut(s)	91
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	87, 290
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	105, 888
Bsp1720I	GCTNAGC	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	3 cut(s)	193, 265, 452
BspANI	GGCC	4 cut(s)	171, 288, 521, 755
BspCNI	CTCAG	3 cut(s)	38, 415, 598
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	360, 864
BspLI	GGNNCC	6 cut(s)	153, 219, 288, 591, 740, 849
BspPI	GGATC	2 cut(s)	100, 896
BsrI	ACTGG	5 cut(s)	148, 206, 547, 666, 947
BssECI	CCNNGG	4 cut(s)	321, 742, 789, 836
BssMI	GATC	2 cut(s)	105, 888
BssT1I	CCWWGG	4 cut(s)	321, 742, 789, 836
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	2 cut(s)	167, 374
Bst6I	CTCTTC	2 cut(s)	635, 1014
BstC8I	GCNNGC	3 cut(s)	73, 724, 969
BstDEI	CTNAG	5 cut(s)	25, 344, 423, 531, 606
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	2 cut(s)	108, 891
BstMAI	GTCTC	2 cut(s)	88, 478
BstMBI	GATC	2 cut(s)	105, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 533, 800
BstNI	CCWGG	1 cut(s)	920
BstNSI	RCATGY	3 cut(s)	440, 763, 1006
BstSCI	CCNGG	2 cut(s)	154, 918
BstSLI	GKGCMC	2 cut(s)	87, 290
BstV1I	GCAGC	4 cut(s)	523, 731, 976, 993
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	171, 288, 521, 755
BtgI	CCRYGG	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	2 cut(s)	468, 556
BtsIMutI	CAGTG	5 cut(s)	33, 141, 468, 556, 659
Cac8I	GCNNGC	3 cut(s)	73, 724, 969
CciI	TCATGA	2 cut(s)	360, 864
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	8 cut(s)	138, 170, 217, 262, 286, 287, 519, 589
Csp6I	GTAC	3 cut(s)	163, 199, 653
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	9 cut(s)	241, 268, 361, 437, 760, 790, 865, 913, 1003
CviQI	GTAC	3 cut(s)	163, 199, 653
DdeI	CTNAG	5 cut(s)	25, 344, 423, 531, 606
DpnI	GATC	2 cut(s)	107, 890
DpnII	GATC	2 cut(s)	105, 888
DraIII	CACNNNGTG	1 cut(s)	503
Eam1104I	CTCTTC	2 cut(s)	635, 1014
EarI	CTCTTC	2 cut(s)	635, 1014
Eco130I	CCWWGG	4 cut(s)	321, 742, 789, 836
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	4 cut(s)	138, 217, 262, 589
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	3 cut(s)	286, 287, 589
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	918
EcoT14I	CCWWGG	4 cut(s)	321, 742, 789, 836
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	4 cut(s)	321, 742, 789, 836
FaeI	CATG	9 cut(s)	244, 271, 364, 440, 763, 793, 868, 916, 1006
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	9 cut(s)	240, 267, 360, 436, 759, 789, 864, 912, 1002
Fnu4HI	GCNGC	4 cut(s)	537, 720, 965, 1007
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	537, 720, 965, 1007
FspBI	CTAG	3 cut(s)	377, 770, 777
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	4 cut(s)	537, 720, 965, 1007
GsaI	CCCAGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	4 cut(s)	171, 288, 521, 755
HapII	CCGG	2 cut(s)	56, 156
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	9 cut(s)	244, 271, 364, 440, 763, 793, 868, 916, 1006
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	833
HindII	GTYRAC	1 cut(s)	833
HinfI	GANTC	5 cut(s)	59, 227, 364, 785, 909
HpaII	CCGG	2 cut(s)	56, 156
Hpy166II	GTNNAC	4 cut(s)	141, 217, 262, 833
Hpy188I	TCNGA	2 cut(s)	12, 232
Hpy188III	TCNNGA	6 cut(s)	56, 361, 368, 377, 566, 865
Hpy8I	GTNNAC	4 cut(s)	141, 217, 262, 833
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	2 cut(s)	167, 374
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	7 cut(s)	539, 649, 719, 916, 964, 971, 993
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 533, 800
HpyF3I	CTNAG	5 cut(s)	25, 344, 423, 531, 606
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	9 cut(s)	244, 271, 364, 440, 763, 793, 868, 916, 1006
HspAI	GCGC	1 cut(s)	577
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	105, 888
LmnI	GCTCC	5 cut(s)	157, 195, 319, 800, 821
Lsp1109I	GCAGC	4 cut(s)	523, 731, 976, 993
LweI	GCATC	1 cut(s)	951
MaeI	CTAG	3 cut(s)	377, 770, 777
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	28, 426, 998
MalI	GATC	2 cut(s)	107, 890
MboI	GATC	2 cut(s)	105, 888
MboII	GAAGA	4 cut(s)	133, 283, 652, 1031
MfeI	CAATTG	1 cut(s)	825
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	87, 290
MluCI	AATT	5 cut(s)	6, 254, 714, 825, 923
MlyI	GAGTC	2 cut(s)	53, 373
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	8 cut(s)	43, 200, 436, 539, 580, 665, 800, 1015
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	3 cut(s)	477, 635, 873
MslI	CAYNNNNRTG	2 cut(s)	146, 764
MspI	CCGG	2 cut(s)	56, 156
MspR9I	CCNGG	2 cut(s)	156, 920
MunI	CAATTG	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	920
MwoI	GCNNNNNNNGC	3 cut(s)	413, 533, 800
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	2 cut(s)	105, 888
NlaIII	CATG	9 cut(s)	244, 271, 364, 440, 763, 793, 868, 916, 1006
NlaIV	GGNNCC	6 cut(s)	153, 219, 288, 591, 740, 849
NmuCI	GTSAC	2 cut(s)	28, 998
NspI	RCATGY	3 cut(s)	440, 763, 1006
PagI	TCATGA	2 cut(s)	360, 864
PfeI	GAWTC	3 cut(s)	227, 785, 909
PflMI	CCANNNNNTGG	1 cut(s)	905
PkrI	GCNGC	4 cut(s)	538, 721, 966, 1008
PleI	GAGTC	2 cut(s)	53, 372
PpsI	GAGTC	2 cut(s)	53, 372
PpuMI	RGGWCCY	1 cut(s)	589
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	918
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	918
PspN4I	GGNNCC	6 cut(s)	153, 219, 288, 591, 740, 849
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	8 cut(s)	138, 170, 217, 262, 286, 287, 519, 589
PspPPI	RGGWCCY	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	3 cut(s)	164, 200, 654
RsaNI	GTAC	3 cut(s)	163, 199, 653
RseI	CAYNNNNRTG	2 cut(s)	146, 764
SaqAI	TTAA	3 cut(s)	477, 635, 873
SatI	GCNGC	4 cut(s)	537, 720, 965, 1007
Sau3AI	GATC	2 cut(s)	105, 888
Sau96I	GGNCC	8 cut(s)	138, 170, 217, 262, 286, 287, 519, 589
ScaI	AGTACT	2 cut(s)	200, 654
SchI	GAGTC	2 cut(s)	53, 373
ScrFI	CCNGG	2 cut(s)	156, 920
SduI	GDGCHC	2 cut(s)	87, 290
SfaNI	GCATC	1 cut(s)	951
SinI	GGWCC	4 cut(s)	138, 217, 262, 589
SmiMI	CAYNNNNRTG	2 cut(s)	146, 764
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	776
Sse9I	AATT	5 cut(s)	6, 254, 714, 825, 923
SsiI	CCGC	3 cut(s)	193, 265, 452
SspI	AATATT	1 cut(s)	943
SspMI	CTAG	3 cut(s)	377, 770, 777
StyD4I	CCNGG	2 cut(s)	154, 918
StyI	CCWWGG	4 cut(s)	321, 742, 789, 836
TaaI	ACNGT	2 cut(s)	167, 374
TaiI	ACGT	1 cut(s)	505
TasI	AATT	5 cut(s)	6, 254, 714, 825, 923
TatI	WGTACW	2 cut(s)	198, 652
TfiI	GAWTC	3 cut(s)	227, 785, 909
Tru1I	TTAA	3 cut(s)	477, 635, 873
Tru9I	TTAA	3 cut(s)	477, 635, 873
TscAI	CASTG	5 cut(s)	33, 148, 475, 556, 666
TseFI	GTSAC	2 cut(s)	28, 998
TseI	GCWGC	4 cut(s)	536, 719, 964, 1006
Tsp45I	GTSAC	2 cut(s)	28, 998
TspDTI	ATGAA	4 cut(s)	229, 284, 690, 901
TspRI	CASTG	5 cut(s)	33, 148, 475, 556, 666
Van91I	CCANNNNNTGG	1 cut(s)	905
VpaK11BI	GGWCC	4 cut(s)	138, 217, 262, 589
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	3 cut(s)	440, 763, 1006
XspI	CTAG	3 cut(s)	377, 770, 777
ZrmI	AGTACT	2 cut(s)	200, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.