Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010298

Physical Location & Seq

Genomic Coordinates Forward (+)

21802149 .. 21805817

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGATTCTCAACTCTTATCTCTCAGTGACGTCCACAGCCACACCCATCTCCCCAGACTCAGCAACTCCACCGGTACCCGACCCGAGACAGACCAAGATCCTATTGCCCAAGAAGAAGCCCATGAAATGGTCCACCGGAGTTGCTCCCGGCGATTACGGCGGACCTCCCACCACCACCAAGCTCCGCAAGTACTGGGGCGGCGAGGATGACCCTCTAACCTCTGACGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGAGCCCAACTCTTCCACTCAATCCACTCCTGTCAAGGAAAAGCCTTCCGGGTTTCTCAGCTTGAATAGAGTCATGGGCCTTGACAGTTTAGAAGTTGATTTGAGCAAACAGCTCACAGCTGCTCCTGCCCAACCCAAGTTAGAAGCGCAAGTTGAGGCGCCAGTGAAAAGTGCCAGCAGTACTGCTATCAAATGGAAACTGGCACCAACACGGCGTGAGCAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGTTCTCAGGAGGACCCAAAAGTAGTGGCTGAGCAGTATAGGAAGCAGTATTTTAGGTTAAAGAAGAGGTTGCAATTCCTTACACTGGGTATAGGCGGTGTTGGATTAGTCTCGGCTTATGTTTCATACTCCCCTGAAATTACGGCTAGCTACGGTGTTGGGTTGCTTGGTTCCGTAGCTTATATGCGTATGCTGGGGAGTAGCGTGGATTCCATGGCAGATGGAGCAAGGGGACTTCTCAAGGGAGCGATTGGGCAACCCAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACAGATGGAATGGGATCGATCATTCCACAATACGGGTTTATGCACCTGGAATTGATACCAATGCTGGTGGGATTCTTCACATACAAGATTGCTACTTTCATCCAAGCTATAGAGGAAGCACTTCCCGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0033614 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.47

Weight (kDa)

9.67

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31040
fragaria_vesca	FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica	MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica	Prupe.3G118500_v2.0.a1
pyrus_communis	pycom09g15650 pycom17g23410
rosa_chinensis	RchiOBHm_Chr2g0129651
rosa_laevigata	RLG00000019093
rosa_multiflora	Rmu_sc0020548.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114480
rosa_rugosa	Rorug02G0288100 Rorug02G0288100
rosa_samantha	Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana	Rw2G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	3 cut(s)	76, 436, 481
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	5 cut(s)	162, 187, 201, 259, 663
AclWI	GGATC	2 cut(s)	94, 887
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	2 cut(s)	32, 437
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	78, 194, 460
AfiI	CCNNNNNNNGG	3 cut(s)	129, 652, 897
AgeI	ACCGGT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	827, 910
AluBI	AGCT	7 cut(s)	184, 339, 391, 398, 717, 746, 972
AluI	AGCT	7 cut(s)	184, 339, 391, 398, 717, 746, 972
Alw26I	GTCTC	2 cut(s)	82, 682
AlwI	GGATC	2 cut(s)	94, 887
Ama87I	CYCGRG	2 cut(s)	85, 990
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	398, 527
ApoI	RAATTY	1 cut(s)	248
AsiGI	ACCGGT	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	985
Asp718I	GGTACC	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	427, 439
AspS9I	GGNCC	5 cut(s)	132, 164, 256, 355, 580
AsuC2I	CCSGG	4 cut(s)	150, 328, 991, 992
AsuNHI	GCTAGC	1 cut(s)	713
AvaI	CYCGRG	2 cut(s)	85, 990
AvaII	GGWCC	4 cut(s)	132, 164, 256, 580
BanI	GGYRCC	3 cut(s)	76, 436, 481
BanII	GRGCYC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	385, 514
BccI	CCATC	3 cut(s)	56, 782, 864
BceAI	ACGGC	3 cut(s)	175, 506, 726
BciT130I	CCWGG	2 cut(s)	829, 912
BcnI	CCSGG	4 cut(s)	150, 328, 991, 992
BcoDI	GTCTC	2 cut(s)	82, 682
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	973
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	3 cut(s)	202, 399, 528
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	3 cut(s)	203, 400, 529
BmcAI	AGTACT	2 cut(s)	194, 460
Bme1390I	CCNGG	6 cut(s)	150, 328, 829, 912, 991, 992
Bme18I	GGWCC	4 cut(s)	132, 164, 256, 580
BmeT110I	CYCGRG	2 cut(s)	85, 990
BmgT120I	GGNCC	5 cut(s)	132, 164, 256, 355, 580
BmiI	GGNNCC	7 cut(s)	78, 282, 438, 483, 582, 739, 840
BmrFI	CCNGG	6 cut(s)	150, 328, 829, 912, 991, 992
BmrI	ACTGGG	2 cut(s)	205, 662
BmtI	GCTAGC	1 cut(s)	717
BmuI	ACTGGG	2 cut(s)	205, 662
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	4 cut(s)	150, 328, 991, 992
Bsa29I	ATCGAT	1 cut(s)	882
BsaHI	GRCGYC	2 cut(s)	32, 437
BsaJI	CCNNGG	4 cut(s)	780, 827, 990, 991
BsaWI	WCCGGW	2 cut(s)	73, 137
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 652, 897
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	5 cut(s)	200, 440, 483, 538, 657
BseBI	CCWGG	2 cut(s)	829, 912
BseCI	ATCGAT	1 cut(s)	882
BseDI	CCNNGG	4 cut(s)	780, 827, 990, 991
BseGI	GGATG	2 cut(s)	214, 964
BseLI	CCNNNNNNNGG	3 cut(s)	129, 652, 897
BseMII	CTCAG	5 cut(s)	39, 75, 349, 587, 588
BseNI	ACTGG	5 cut(s)	200, 440, 483, 538, 657
BseXI	GCAGC	2 cut(s)	385, 514
BseYI	CCCAGC	1 cut(s)	760
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	3 cut(s)	76, 436, 481
BshTI	ACCGGT	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	882
BsiHKCI	CYCGRG	2 cut(s)	85, 990
BsiSI	CCGG	5 cut(s)	74, 138, 150, 327, 991
BslFI	GGGAC	1 cut(s)	813
BslI	CCNNNNNNNGG	3 cut(s)	129, 652, 897
BsmAI	GTCTC	2 cut(s)	82, 682
BsmFI	GGGAC	1 cut(s)	813
BsnI	GGCC	1 cut(s)	357
BsoBI	CYCGRG	2 cut(s)	85, 990
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	99, 879, 883
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	5 cut(s)	162, 187, 201, 259, 663
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	5 cut(s)	38, 74, 348, 586, 589
BspDI	ATCGAT	1 cut(s)	882
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	7 cut(s)	78, 282, 438, 483, 582, 739, 840
BspOI	GCTAGC	1 cut(s)	717
BspPI	GGATC	2 cut(s)	94, 887
BspT107I	GGYRCC	3 cut(s)	76, 436, 481
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	5 cut(s)	200, 440, 483, 538, 657
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	4 cut(s)	780, 827, 990, 991
BssMI	GATC	3 cut(s)	99, 879, 883
BssNI	GRCGYC	2 cut(s)	32, 437
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	2 cut(s)	829, 912
Bst4CI	ACNGT	2 cut(s)	365, 722
Bst6I	CTCTTC	2 cut(s)	295, 626
BstACI	GRCGYC	2 cut(s)	32, 437
BstC8I	GCNNGC	2 cut(s)	454, 715
BstDEI	CTNAG	6 cut(s)	25, 61, 335, 522, 573, 597
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	214, 964
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	427, 439
BstKTI	GATC	3 cut(s)	102, 882, 886
BstMAI	GTCTC	2 cut(s)	82, 682
BstMBI	GATC	3 cut(s)	99, 879, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	159, 404, 524, 791, 829
BstNI	CCWGG	2 cut(s)	829, 912
BstSCI	CCNGG	6 cut(s)	148, 326, 827, 910, 989, 990
BstSFI	CTRYAG	1 cut(s)	973
BstV1I	GCAGC	2 cut(s)	385, 514
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	882
BsuRI	GGCC	1 cut(s)	357
BsuTUI	ATCGAT	1 cut(s)	882
BtgI	CCRYGG	1 cut(s)	780
BtsCI	GGATG	2 cut(s)	214, 964
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	4 cut(s)	33, 447, 547, 650
Cac8I	GCNNGC	2 cut(s)	454, 715
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	2 cut(s)	427, 439
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	5 cut(s)	132, 164, 256, 355, 580
Cfr9I	CCCGGG	1 cut(s)	990
ClaI	ATCGAT	1 cut(s)	882
Csp6I	GTAC	3 cut(s)	77, 193, 459
CspAI	ACCGGT	1 cut(s)	73
CspCI	CAANNNNNGTGG	8 cut(s)	124, 159, 488, 523, 573, 608, 913, 948
CviAII	CATG	6 cut(s)	124, 253, 262, 352, 781, 856
CviQI	GTAC	3 cut(s)	77, 193, 459
DdeI	CTNAG	6 cut(s)	25, 61, 335, 522, 573, 597
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	3 cut(s)	101, 881, 885
DpnII	GATC	3 cut(s)	99, 879, 883
DraIII	CACNNNGTG	1 cut(s)	494
Eam1104I	CTCTTC	2 cut(s)	295, 626
EarI	CTCTTC	2 cut(s)	295, 626
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	4 cut(s)	132, 164, 256, 580
Eco88I	CYCGRG	2 cut(s)	85, 990
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	827, 910
EcoT14I	CCWWGG	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	6 cut(s)	127, 256, 265, 355, 784, 859
FaqI	GGGAC	1 cut(s)	813
FatI	CATG	6 cut(s)	123, 252, 261, 351, 780, 855
Fnu4HI	GCNGC	3 cut(s)	202, 399, 528
FokI	GGATG	2 cut(s)	221, 951
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	202, 399, 528
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	2 cut(s)	426, 438
GluI	GCNGC	3 cut(s)	202, 399, 528
GsaI	CCCAGC	1 cut(s)	764
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	5 cut(s)	74, 138, 150, 327, 991
HhaI	GCGC	2 cut(s)	427, 439
Hin1I	GRCGYC	2 cut(s)	32, 437
Hin1II	CATG	6 cut(s)	127, 256, 265, 355, 784, 859
Hin6I	GCGC	2 cut(s)	425, 437
HinP1I	GCGC	2 cut(s)	425, 437
HinfI	GANTC	5 cut(s)	7, 59, 348, 776, 937
HpaII	CCGG	5 cut(s)	74, 138, 150, 327, 991
Hpy166II	GTNNAC	2 cut(s)	36, 135
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	278, 557, 575, 856
Hpy8I	GTNNAC	2 cut(s)	36, 135
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	365, 722
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	530, 640, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	159, 404, 524, 791, 829
HpyF3I	CTNAG	6 cut(s)	25, 61, 335, 522, 573, 597
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	2 cut(s)	32, 437
Hsp92II	CATG	6 cut(s)	127, 256, 265, 355, 784, 859
HspAI	GCGC	2 cut(s)	425, 437
KasI	GGCGCC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	80
Kzo9I	GATC	3 cut(s)	99, 879, 883
LmnI	GCTCC	6 cut(s)	151, 189, 280, 406, 791, 812
Lsp1109I	GCAGC	2 cut(s)	385, 514
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	101, 881, 885
MboI	GATC	3 cut(s)	99, 879, 883
MboII	GAAGA	4 cut(s)	127, 282, 643, 932
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	5 cut(s)	248, 560, 641, 705, 915
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	53, 357
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	9 cut(s)	177, 199, 225, 232, 427, 530, 571, 627, 971
MroXI	GAANNNNTTC	1 cut(s)	985
MseI	TTAA	3 cut(s)	563, 626, 864
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	5 cut(s)	74, 138, 150, 327, 991
MspR9I	CCNGG	6 cut(s)	150, 328, 829, 912, 991, 992
MvaI	CCWGG	2 cut(s)	829, 912
MwoI	GCNNNNNNNGC	5 cut(s)	159, 404, 524, 791, 829
NarI	GGCGCC	1 cut(s)	437
NciI	CCSGG	4 cut(s)	150, 328, 991, 992
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	99, 879, 883
NheI	GCTAGC	1 cut(s)	713
NlaIII	CATG	6 cut(s)	127, 256, 265, 355, 784, 859
NlaIV	GGNNCC	7 cut(s)	78, 282, 438, 483, 582, 739, 840
NmeAIII	GCCGAG	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	985
PfeI	GAWTC	3 cut(s)	7, 776, 937
PflMI	CCANNNNNTGG	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	203, 400, 529
PleI	GAGTC	2 cut(s)	53, 356
PluTI	GGCGCC	1 cut(s)	440
PpsI	GAGTC	2 cut(s)	53, 356
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	827, 910
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	2 cut(s)	827, 910
PspN4I	GGNNCC	7 cut(s)	78, 282, 438, 483, 582, 739, 840
PspPI	GGNCC	5 cut(s)	132, 164, 256, 355, 580
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	78, 194, 460
RsaNI	GTAC	3 cut(s)	77, 193, 459
SaqAI	TTAA	3 cut(s)	563, 626, 864
SatI	GCNGC	3 cut(s)	202, 399, 528
Sau3AI	GATC	3 cut(s)	99, 879, 883
Sau96I	GGNCC	5 cut(s)	132, 164, 256, 355, 580
ScaI	AGTACT	2 cut(s)	194, 460
SchI	GAGTC	2 cut(s)	53, 357
ScrFI	CCNGG	6 cut(s)	150, 328, 829, 912, 991, 992
SduI	GDGCHC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	973
SfoI	GGCGCC	1 cut(s)	438
SinI	GGWCC	4 cut(s)	132, 164, 256, 580
SmaI	CCCGGG	1 cut(s)	992
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	5 cut(s)	248, 560, 641, 705, 915
SsiI	CCGC	5 cut(s)	162, 187, 201, 259, 663
SspDI	GGCGCC	1 cut(s)	436
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	6 cut(s)	148, 326, 827, 910, 989, 990
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	2 cut(s)	365, 722
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	882
TasI	AATT	5 cut(s)	248, 560, 641, 705, 915
TatI	WGTACW	2 cut(s)	192, 458
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	7, 776, 937
Tru1I	TTAA	3 cut(s)	563, 626, 864
Tru9I	TTAA	3 cut(s)	563, 626, 864
TscAI	CASTG	4 cut(s)	33, 447, 547, 657
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	398, 527
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	6 cut(s)	140, 223, 241, 278, 681, 953
TspGWI	ACGGA	1 cut(s)	730
TspMI	CCCGGG	1 cut(s)	990
TspRI	CASTG	4 cut(s)	33, 447, 547, 657
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	4 cut(s)	132, 164, 256, 580
XapI	RAATTY	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	990
XmnI	GAANNNNTTC	1 cut(s)	985
XspI	CTAG	1 cut(s)	714
ZraI	GACGTC	1 cut(s)	33
ZrmI	AGTACT	2 cut(s)	194, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.