Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007951

Physical Location & Seq

Genomic Coordinates Forward (+)

13272375 .. 13274578

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGCTTCAGATAGCAGGAGCGTCTCTAAATCTGCTGTGTCAAAAAGAACCCTCGCCGTATTGCCTTGCTCGCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAAACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGTCTTCCAAAAACGAGAAAGAGATAGTGGAGCTTTTCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCTGCTAAGAAAGAAGAAAAGAAGACTGAAGAAGCTTCTAAAGGACAGGGAGGAAAAGAGAGTGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAAACAAGTTAGCAATTTCAATTCTGAGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAGACAAAATCACAGTTCCAGTCGTTTCGATTCGCGAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCAAACGTAATTCTCCTGTACCGAGACATAAATCTCAAGCCAGTTATTCTAGTGAGGCCATTTTTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGCAGCTGAGTATGATGAACCTGAACCTGAGGCTGAGTATGAACCTGAATCTGAACCAGAACTTGCTATTCTCGAATCAGTGTCAGAGCTGAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGAGGAGGATCATAACTTCGTTATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAGGAAGAGACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

309

Amino Acids

35.59

Weight (kDa)

4.89

Isoelectric Point (pI)

70.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT2G31150
fragaria_vesca	FvH4_2g21350
malus_domestica	MD05G1196200.v1.1 MD10G1183500.v1.1
prunus_persica	Prupe.8G222600_v2.0.a1
pyrus_communis	pycom05g18320 pycom10g15850
rosa_chinensis	RchiOBHm_Chr6g0287941
rosa_laevigata	RLG00000012454
rosa_multiflora	Rmu_sc0000042.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180650 Rroxscaffold_7G00180890
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302800 Rh6BG309000 Rh6CG300700 Rh6CG316700 Rh6DG301500
rosa_wichuraiana	Rw6G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	475, 646
AclWI	GGATC	2 cut(s)	639, 822
AcuI	CTGAAG	2 cut(s)	309, 420
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	507, 628
AflII	CTTAAG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	5 cut(s)	179, 229, 400, 526, 600
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	911
Alw26I	GTCTC	5 cut(s)	30, 320, 541, 861, 876
Alw44I	GTGCAC	1 cut(s)	907
AlwI	GGATC	2 cut(s)	639, 822
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	509, 579
ApaLI	GTGCAC	1 cut(s)	907
ApeKI	GCWGC	4 cut(s)	260, 263, 412, 683
AspS9I	GGNCC	1 cut(s)	618
AsuC2I	CCSGG	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	618
AxyI	CCTNAGG	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	911
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	3 cut(s)	186, 186, 290
Bbv12I	GWGCWC	1 cut(s)	911
BbvI	GCAGC	4 cut(s)	247, 250, 424, 695
BccI	CCATC	2 cut(s)	149, 161
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	5 cut(s)	30, 320, 541, 861, 876
BfaI	CTAG	2 cut(s)	573, 776
BfmI	CTRYAG	1 cut(s)	681
BfrI	CTTAAG	1 cut(s)	344
BisI	GCNGC	4 cut(s)	261, 264, 413, 684
BlsI	GCNGC	4 cut(s)	262, 265, 414, 685
Bme1390I	CCNGG	2 cut(s)	251, 508
Bme18I	GGWCC	1 cut(s)	618
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	2 cut(s)	251, 508
BmsI	GCATC	2 cut(s)	421, 524
BpiI	GAAGAC	3 cut(s)	186, 186, 290
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	85, 543
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	124, 874
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 628
Bse1I	ACTGG	2 cut(s)	459, 564
Bse21I	CCTNAGG	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	124, 874
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	507, 628
BseMII	CTCAG	8 cut(s)	344, 378, 396, 660, 666, 678, 699, 705
BseNI	ACTGG	2 cut(s)	459, 564
BseRI	GAGGAG	1 cut(s)	824
BseSI	GKGCMC	1 cut(s)	911
BseXI	GCAGC	4 cut(s)	247, 250, 424, 695
Bsh1236I	CGCG	2 cut(s)	475, 646
BshFI	GGCC	2 cut(s)	511, 581
BsiHKAI	GWGCWC	1 cut(s)	911
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	507, 628
BsmAI	GTCTC	5 cut(s)	30, 320, 541, 861, 876
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	511, 581
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	256, 911
Bsp143I	GATC	3 cut(s)	484, 631, 814
Bsp68I	TCGCGA	1 cut(s)	475
BspANI	GGCC	2 cut(s)	511, 581
BspCNI	CTCAG	8 cut(s)	345, 377, 397, 661, 667, 679, 700, 706
BspFNI	CGCG	2 cut(s)	475, 646
BspLI	GGNNCC	1 cut(s)	620
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	2 cut(s)	639, 822
BspTI	CTTAAG	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	459, 564
BssECI	CCNNGG	2 cut(s)	124, 874
BssMI	GATC	3 cut(s)	484, 631, 814
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	3 cut(s)	331, 455, 608
Bst6I	CTCTTC	1 cut(s)	874
BstAFI	CTTAAG	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	73, 513
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	475, 646
BstKTI	GATC	3 cut(s)	487, 634, 817
BstMAI	GTCTC	5 cut(s)	30, 320, 541, 861, 876
BstMBI	GATC	3 cut(s)	484, 631, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 260
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	249, 506
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	911
BstUI	CGCG	2 cut(s)	475, 646
BstV1I	GCAGC	4 cut(s)	247, 250, 424, 695
BstV2I	GAAGAC	3 cut(s)	186, 186, 290
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	511, 581
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	4 cut(s)	336, 613, 765, 909
BtuMI	TCGCGA	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	73, 513
Cfr13I	GGNCC	1 cut(s)	618
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	2 cut(s)	116, 187
CviQI	GTAC	1 cut(s)	542
DpnI	GATC	3 cut(s)	486, 633, 816
DpnII	GATC	3 cut(s)	484, 631, 814
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	874
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	309, 420
Eco81I	CCTNAGG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	2 cut(s)	119, 190
FaiI	YATR	9 cut(s)	78, 117, 188, 489, 552, 693, 720, 819, 830
FatI	CATG	2 cut(s)	115, 186
Fnu4HI	GCNGC	4 cut(s)	261, 264, 413, 684
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	261, 264, 413, 684
FspBI	CTAG	2 cut(s)	573, 776
GluI	GCNGC	4 cut(s)	261, 264, 413, 684
HaeIII	GGCC	2 cut(s)	511, 581
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	119, 190
HindIII	AAGCTT	3 cut(s)	294, 520, 594
HinfI	GANTC	8 cut(s)	335, 470, 641, 677, 728, 755, 779, 854
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	334, 909
Hpy188I	TCNGA	7 cut(s)	12, 125, 406, 439, 733, 766, 844
Hpy188III	TCNNGA	7 cut(s)	92, 102, 176, 229, 366, 474, 752
Hpy8I	GTNNAC	2 cut(s)	334, 909
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	331, 455, 608
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	3 cut(s)	494, 683, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 260
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	2 cut(s)	119, 190
Kzo9I	GATC	3 cut(s)	484, 631, 814
LmnI	GCTCC	5 cut(s)	4, 20, 220, 252, 420
Lsp1109I	GCAGC	4 cut(s)	247, 250, 424, 695
LweI	GCATC	2 cut(s)	421, 524
MaeI	CTAG	2 cut(s)	573, 776
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	3 cut(s)	348, 602, 610
MalI	GATC	3 cut(s)	486, 633, 816
MboI	GATC	3 cut(s)	484, 631, 814
MhlI	GDGCHC	2 cut(s)	256, 911
MluCI	AATT	3 cut(s)	394, 400, 532
MlyI	GAGTC	5 cut(s)	329, 650, 686, 788, 863
MseI	TTAA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	686
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	251, 508
MvaI	CCWGG	1 cut(s)	508
MvnI	CGCG	2 cut(s)	475, 646
MwoI	GCNNNNNNNGC	2 cut(s)	72, 260
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	3 cut(s)	484, 631, 814
NlaIII	CATG	2 cut(s)	119, 190
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	1 cut(s)	610
NruI	TCGCGA	1 cut(s)	475
NspI	RCATGY	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	255
PciI	ACATGT	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	470, 728, 755
PkrI	GCNGC	4 cut(s)	262, 265, 414, 685
PleI	GAGTC	5 cut(s)	329, 649, 685, 787, 862
PpsI	GAGTC	5 cut(s)	329, 649, 685, 787, 862
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	1 cut(s)	618
PspXI	VCTCGAGB	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	686
RruI	TCGCGA	1 cut(s)	475
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	261, 264, 413, 684
Sau3AI	GATC	3 cut(s)	484, 631, 814
Sau96I	GGNCC	1 cut(s)	618
SchI	GAGTC	5 cut(s)	329, 650, 686, 788, 863
ScrFI	CCNGG	2 cut(s)	251, 508
SduI	GDGCHC	2 cut(s)	256, 911
SfaNI	GCATC	2 cut(s)	421, 524
SfcI	CTRYAG	1 cut(s)	681
Sfr274I	CTCGAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	618
SlaI	CTCGAG	1 cut(s)	255
SmlI	CTYRAG	4 cut(s)	100, 255, 344, 558
SmoI	CTYRAG	4 cut(s)	100, 255, 344, 558
Sse9I	AATT	3 cut(s)	394, 400, 532
SspMI	CTAG	2 cut(s)	573, 776
StyD4I	CCNGG	2 cut(s)	249, 506
TaaI	ACNGT	3 cut(s)	331, 455, 608
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	3 cut(s)	256, 468, 753
TasI	AATT	3 cut(s)	394, 400, 532
TfiI	GAWTC	3 cut(s)	470, 728, 755
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	4 cut(s)	336, 613, 765, 916
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	4 cut(s)	260, 263, 412, 683
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	5 cut(s)	606, 666, 711, 735, 816
TspRI	CASTG	4 cut(s)	336, 613, 765, 916
Vha464I	CTTAAG	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	505
XceI	RCATGY	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	255
XspI	CTAG	2 cut(s)	573, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.