Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000042.1

Orthogroup ID

OG0007951

Physical Location & Seq

Genomic Coordinates Forward (+)

5214 .. 6979

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000042.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgtcacagagcgttcatctcatctgttctggaccatcagatagcaaatgtctaccttgttctgggatttcggggagagtagcccctgtatatccttgctcttctcgtttcaaccatagattcaagtcgcaggtaagggttggatcactaagaggtgcttatactggggtgtcttttacgtgcagagcaggttctagtggtcgtaatagaaatccagacttcccaaggcaaaacaggcaagggtactctcgggggaggaacaggagaaatgaagagagagacagctttgaaaaccttgaagaatctgatttgctttctgctaaaaatggtccattgctctccctccctagtaacacaaagtttggggctactgcagcccctggtcccagagaaaaagagattgttgagctgttcaggaaagtccaggctcagcttcgggagagaactgctgttaaagaagaaaagaaggttgaacccgtgcaagggcaaggtaaagataatggaactgtggattctcttcttaaactactaaggaaacattcggctgaacaggcaaagagaaacagtaatggggttggaaacaaagactttatgttggaccaaccagaaaagactggccgatatagtgaaagaaaaaacacggcttctttggattcaattaacagtgtgaaggattatgctgaagagcctactgcctctttgagcaggcctgcatcaaattttcgacgcaagtcgcctatcaatcgattgacatatcaacctatttattcagaggatgatgagatagtcaattcggtgcagcatgtgaattcaactgacaaaagaaaaaagaattatgctgagagagtttctgaaccagaacctgagccagagccagagcttgagattgatgtggagtcggtacttgagcctgagcctgttcatgatactgagtttggatttgaacctgaacccgagcctgttcatgatactgagtttggatttgaacctgaacccgagcctgagcaagagattgttcagttgttagaggatgagacttcaggtactgaagaaaatgtggatgatgatgatgcggacgaagacaaagagcaacttattgaacagacggatttgagtgcatgtaagctgccagaattgagggcacttgccaagtctcgaggcgtgaaagggttctcaaagatgaagaaggccgagcttctggagttgctaactggtgggagcttagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

409

Amino Acids

45.72

Weight (kDa)

5.17

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT2G31150
fragaria_vesca	FvH4_2g21350
malus_domestica	MD05G1196200.v1.1 MD10G1183500.v1.1
prunus_persica	Prupe.8G222600_v2.0.a1
pyrus_communis	pycom05g18320 pycom10g15850
rosa_chinensis	RchiOBHm_Chr6g0287941
rosa_laevigata	RLG00000012454
rosa_multiflora	Rmu_sc0000042.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180650 Rroxscaffold_7G00180890
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302800 Rh6BG309000 Rh6CG300700 Rh6CG316700 Rh6DG301500
rosa_wichuraiana	Rw6G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	121, 179
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	1 cut(s)	1073
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	718, 808
AcuI	CTGAAG	3 cut(s)	702, 1023, 1068
AfaI	GTAC	3 cut(s)	245, 903, 1045
AfiI	CCNNNNNNNGG	3 cut(s)	62, 482, 483
AjnI	CCWGG	2 cut(s)	379, 423
AluBI	AGCT	7 cut(s)	285, 409, 433, 880, 1126, 1195, 1221
AluI	AGCT	7 cut(s)	285, 409, 433, 880, 1126, 1195, 1221
Alw26I	GTCTC	3 cut(s)	273, 1028, 1158
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	3 cut(s)	380, 863, 1046
Ama87I	CYCGRG	4 cut(s)	249, 953, 995, 1155
AoxI	GGCC	3 cut(s)	616, 707, 1188
ApeKI	GCWGC	3 cut(s)	374, 799, 1126
ApoI	RAATTY	2 cut(s)	718, 808
Asp700I	GAANNNNTTC	1 cut(s)	1169
AspS9I	GGNCC	4 cut(s)	32, 329, 383, 598
AvaI	CYCGRG	4 cut(s)	249, 953, 995, 1155
AvaII	GGWCC	4 cut(s)	32, 329, 383, 598
BaeGI	GKGCMC	1 cut(s)	1144
BbsI	GAAGAC	1 cut(s)	1086
BbvI	GCAGC	3 cut(s)	386, 811, 1113
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	657
BciT130I	CCWGG	2 cut(s)	381, 425
BcoDI	GTCTC	3 cut(s)	273, 1028, 1158
BfaI	CTAG	2 cut(s)	195, 348
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	2 cut(s)	121, 179
BisI	GCNGC	3 cut(s)	375, 800, 1127
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	3 cut(s)	376, 801, 1128
Bme1390I	CCNGG	2 cut(s)	381, 425
Bme18I	GGWCC	4 cut(s)	32, 329, 383, 598
BmeT110I	CYCGRG	4 cut(s)	249, 953, 995, 1155
BmgT120I	GGNCC	4 cut(s)	32, 329, 383, 598
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	381, 425
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	722, 1060
BmuI	ACTGGG	1 cut(s)	174
BoxI	GACNNNNGTC	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	1086
BpmI	CTGGAG	1 cut(s)	1220
Bpu10I	CCTNAGC	3 cut(s)	864, 912, 1002
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	902, 926
Bsa29I	ATCGAT	1 cut(s)	745
BsaAI	YACGTR	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	224, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 482, 483
Bse1I	ACTGG	3 cut(s)	169, 619, 1216
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	381, 425
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	2 cut(s)	224, 379
BseGI	GGATG	3 cut(s)	781, 1036, 1066
BseLI	CCNNNNNNNGG	3 cut(s)	62, 482, 483
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	7 cut(s)	443, 831, 855, 903, 921, 963, 993
BseNI	ACTGG	3 cut(s)	169, 619, 1216
BseSI	GKGCMC	1 cut(s)	1144
BseXI	GCAGC	3 cut(s)	386, 811, 1113
BsgI	GTGCAG	2 cut(s)	202, 818
BshFI	GGCC	3 cut(s)	618, 709, 1190
BshVI	ATCGAT	1 cut(s)	745
BsiHKCI	CYCGRG	4 cut(s)	249, 953, 995, 1155
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	62, 482, 483
BsmAI	GTCTC	3 cut(s)	273, 1028, 1158
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	618, 709, 1190
BsoBI	CYCGRG	4 cut(s)	249, 953, 995, 1155
Bsp1286I	GDGCHC	1 cut(s)	1144
Bsp143I	GATC	1 cut(s)	143
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	1073
BspANI	GGCC	3 cut(s)	618, 709, 1190
BspCNI	CTCAG	7 cut(s)	442, 832, 856, 904, 922, 964, 994
BspDI	ATCGAT	1 cut(s)	745
BspHI	TCATGA	2 cut(s)	922, 964
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	2 cut(s)	121, 179
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	2 cut(s)	106, 678
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	169, 619, 1216
BssECI	CCNNGG	2 cut(s)	224, 379
BssMI	GATC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	381, 425
Bst4CI	ACNGT	3 cut(s)	508, 566, 665
Bst6I	CTCTTC	4 cut(s)	106, 267, 522, 678
BstBAI	YACGTR	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	707, 711
BstF5I	GGATG	3 cut(s)	781, 1036, 1066
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	3 cut(s)	273, 1028, 1158
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 374, 551
BstNI	CCWGG	2 cut(s)	381, 425
BstNSI	RCATGY	2 cut(s)	806, 1122
BstPAI	GACNNNNGTC	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	379, 423
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	1144
BstV1I	GCAGC	3 cut(s)	386, 811, 1113
BstV2I	GAAGAC	1 cut(s)	1086
Bsu15I	ATCGAT	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	618, 709, 1190
BsuTUI	ATCGAT	1 cut(s)	745
BtsCI	GGATG	3 cut(s)	781, 1036, 1066
BtsIMutI	CAGTG	1 cut(s)	670
BveI	ACCTGC	2 cut(s)	121, 179
Cac8I	GCNNGC	2 cut(s)	707, 711
CaiI	CAGNNNCTG	3 cut(s)	380, 863, 1046
CciI	TCATGA	2 cut(s)	922, 964
Cfr13I	GGNCC	4 cut(s)	32, 329, 383, 598
ClaI	ATCGAT	1 cut(s)	745
CseI	GACGC	1 cut(s)	735
Csp6I	GTAC	3 cut(s)	244, 902, 1044
CviAII	CATG	4 cut(s)	803, 923, 965, 1119
CviQI	GTAC	3 cut(s)	244, 902, 1044
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	106, 267, 522, 678
EarI	CTCTTC	4 cut(s)	106, 267, 522, 678
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	709
Eco47I	GGWCC	4 cut(s)	32, 329, 383, 598
Eco57I	CTGAAG	3 cut(s)	702, 1023, 1068
Eco88I	CYCGRG	4 cut(s)	249, 953, 995, 1155
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	2 cut(s)	379, 423
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	806, 926, 968, 1122
FalI	AAGNNNNNCTT	4 cut(s)	142, 174, 1077, 1109
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	4 cut(s)	802, 922, 964, 1118
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	375, 800, 1127
FokI	GGATG	3 cut(s)	788, 1043, 1073
Fsp4HI	GCNGC	3 cut(s)	375, 800, 1127
FspBI	CTAG	2 cut(s)	195, 348
GluI	GCNGC	3 cut(s)	375, 800, 1127
GsuI	CTGGAG	1 cut(s)	1220
HaeIII	GGCC	3 cut(s)	618, 709, 1190
HgaI	GACGC	1 cut(s)	735
Hin1II	CATG	4 cut(s)	806, 926, 968, 1122
HinfI	GANTC	5 cut(s)	120, 302, 512, 653, 896
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	4 cut(s)	40, 307, 772, 853
Hpy188III	TCNNGA	8 cut(s)	30, 215, 415, 437, 923, 965, 1155, 1199
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	3 cut(s)	460, 664, 1180
HpyCH4III	ACNGT	3 cut(s)	508, 566, 665
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	6 cut(s)	183, 374, 481, 713, 799, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 374, 551
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	806, 926, 968, 1122
Kzo9I	GATC	1 cut(s)	143
LguI	GCTCTTC	2 cut(s)	106, 678
LmnI	GCTCC	1 cut(s)	1218
Lsp1109I	GCAGC	3 cut(s)	386, 811, 1113
LweI	GCATC	2 cut(s)	722, 1060
MaeI	CTAG	2 cut(s)	195, 348
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	3, 350
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	9 cut(s)	93, 284, 311, 470, 509, 695, 1061, 1091, 1195
MhlI	GDGCHC	1 cut(s)	1144
MluCI	AATT	6 cut(s)	657, 718, 790, 808, 832, 1133
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	3 cut(s)	121, 556, 576
MnlI	CCTC	8 cut(s)	146, 249, 353, 706, 766, 1021, 1131, 1151
MroXI	GAANNNNTTC	1 cut(s)	1169
MseI	TTAA	3 cut(s)	453, 522, 660
MspR9I	CCNGG	2 cut(s)	381, 425
MvaI	CCWGG	2 cut(s)	381, 425
MwoI	GCNNNNNNNGC	3 cut(s)	235, 374, 551
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	806, 926, 968, 1122
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	1216
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	2 cut(s)	806, 1122
PaeR7I	CTCGAG	1 cut(s)	1155
PagI	TCATGA	2 cut(s)	922, 964
PceI	AGGCCT	1 cut(s)	709
PciSI	GCTCTTC	2 cut(s)	106, 678
PdmI	GAANNNNTTC	1 cut(s)	1169
PfeI	GAWTC	4 cut(s)	120, 302, 512, 653
PkrI	GCNGC	3 cut(s)	376, 801, 1128
PleI	GAGTC	1 cut(s)	904
PpsI	GAGTC	1 cut(s)	904
Ppu21I	YACGTR	1 cut(s)	180
PshAI	GACNNNNGTC	1 cut(s)	730
Psp6I	CCWGG	2 cut(s)	379, 423
PspGI	CCWGG	2 cut(s)	379, 423
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	4 cut(s)	32, 329, 383, 598
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	3 cut(s)	380, 863, 1046
RsaI	GTAC	3 cut(s)	245, 903, 1045
RsaNI	GTAC	3 cut(s)	244, 902, 1044
SapI	GCTCTTC	2 cut(s)	106, 678
SaqAI	TTAA	3 cut(s)	453, 522, 660
SatI	GCNGC	3 cut(s)	375, 800, 1127
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	4 cut(s)	32, 329, 383, 598
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	2 cut(s)	381, 425
SduI	GDGCHC	1 cut(s)	1144
SfaNI	GCATC	2 cut(s)	722, 1060
SfcI	CTRYAG	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	1155
SinI	GGWCC	4 cut(s)	32, 329, 383, 598
SlaI	CTCGAG	1 cut(s)	1155
SmlI	CTYRAG	3 cut(s)	881, 905, 1155
SmoI	CTYRAG	3 cut(s)	881, 905, 1155
Sse9I	AATT	6 cut(s)	657, 718, 790, 808, 832, 1133
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	1 cut(s)	1073
SspMI	CTAG	2 cut(s)	195, 348
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	2 cut(s)	379, 423
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	508, 566, 665
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	724, 745, 1156
TasI	AATT	6 cut(s)	657, 718, 790, 808, 832, 1133
TfiI	GAWTC	4 cut(s)	120, 302, 512, 653
Tru1I	TTAA	3 cut(s)	453, 522, 660
Tru9I	TTAA	3 cut(s)	453, 522, 660
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	374, 799, 1126
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	5 cut(s)	5, 285, 911, 953, 1196
TspGWI	ACGGA	1 cut(s)	1121
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	4 cut(s)	32, 329, 383, 598
XapI	RAATTY	2 cut(s)	718, 808
XceI	RCATGY	2 cut(s)	806, 1122
XhoI	CTCGAG	1 cut(s)	1155
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	1169
XspI	CTAG	2 cut(s)	195, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.