Rh6CG316700

rho-N domain-containing protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007951
Physical Location & Seq
Reverse (-)
50193794 .. 50196168
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG316700.1

Sequence Viewer

Length: 1236 bp
ATGTCACAGAGCGTTCATCTCATCTGTTCTGGACCATCAGATAGCAAATGTCTACCTTGTTCTGGGATTTCGGGGAGAGTAGCCCCTGTATATCCTTGCTCTTCTCGTTTCAACCATAGATTCAAGTCGCAGGTGAGGGTTGGATCACTAAGAGGTGCTTATACTGGGGTGTCTTTTACGTGCAGAGCAGGTTCTAGTGGTCGTAATAGAAATCCAGACTTCCCAAGGCAAAACAGGCAAGGTTACTCTCGGGGGAGGAACAGGAGAAATGAAGAGAGAGACAGCTTTGAAAACCTTGAAGAATCTGATTTGCTTTCTGCTAAAAATGGTCCATTGCTCTCCCTCCCTAGTAACACAAAGTTTGGGGCTACTGCAGCCCCTGGTCCCAGAGAAAAAGAGATTGTTGAGCTGTTCAGGAAAGTCCAGGCTCAGCTTCGGGAGAGAACTGCTGTTAAAGAAGAAAAGAAGGTTGAACCCGTGCAAGGGCAAGGTAAAGATAATGGAACTGTGGATTCTCTTCTTAAACTACTAAGGAAACATTCGGCTGAACAGGCAAAGAGAAACAGTAATGGGGTTGGAAACAAAGACTTTATGTTGGACCAACCAGAAAAGACTGGCCGATATAGTGAAAGAAAAAACACGGCTTCTTTGGATTCAATTAACAGTGTGAAGGATTATGCTGAAGAGCCGACTGCCTCTTTGAGCAGGCCCGCATCAAATTTTCGACGCAAGTCGCCTATCAATCGATTGACATATCAACCTATTTATTCAGAGGATGATGAGATAGTCAATTCGGTGCAGCATGTGAATTCAACTGACAAAAGAAAAAAGAATTATGCTGAAAGAGTTTCTGAACCAGAACCTGAGCCAGAGCCAGAGCTTGAGATTGATGTGGAGTCGGTACTTGAGCCTGAGCCTGTTCATCATACTGAGTTTGGATTTGAACCTGAAGCCGAGCCTGTTCATGATACTGAGTTTGGATTTGAACCTGAGCCTGAGCCTGAGCCTGAGCAAGAGATTGTTCAGTTGTTAGAGGATGAGACTTCAGGTACTGAAGTAAATGTGGATGATGATGATGTGGACGAAGACAAAGAGCAACTTATTGAACAGACGGATTTGAGTGCATGTAAGCTGCCAGAATTGAGGGCACTTGCCAAGTCTCGAGGCGTGAAAGGGTTCTCAAAGATGAAGAAGGCCGAGCTTCTGGAGTTGCTAACTGGTGGGAGCTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

411

Amino Acids

45.95

Weight (kDa)

5.26

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 372 - 403 1.8e-06 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 2 cut(s) 121, 179
AccI GTMKAC 1 cut(s) 52
AciI CCGC 1 cut(s) 711
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 2 cut(s) 718, 808
AcuI CTGAAG 4 cut(s) 702, 969, 1029, 1074
AfaI GTAC 2 cut(s) 903, 1051
AfiI CCNNNNNNNGG 3 cut(s) 62, 482, 483
AjnI CCWGG 2 cut(s) 379, 423
AluBI AGCT 7 cut(s) 285, 409, 433, 880, 1132, 1201, 1227
AluI AGCT 7 cut(s) 285, 409, 433, 880, 1132, 1201, 1227
Alw26I GTCTC 3 cut(s) 273, 1034, 1164
AlwI GGATC 1 cut(s) 151
AlwNI CAGNNNCTG 3 cut(s) 380, 863, 1052
Ama87I CYCGRG 2 cut(s) 249, 1161
AoxI GGCC 3 cut(s) 616, 707, 1194
ApeKI GCWGC 3 cut(s) 374, 799, 1132
ApoI RAATTY 2 cut(s) 718, 808
ArsI GACNNNNNNTTYG 2 cut(s) 682, 714
Asp700I GAANNNNTTC 1 cut(s) 1175
AspS9I GGNCC 5 cut(s) 32, 329, 383, 598, 708
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 2 cut(s) 249, 1161
AvaII GGWCC 4 cut(s) 32, 329, 383, 598
BaeGI GKGCMC 1 cut(s) 1150
BaeI ACNNNNGTAYC 2 cut(s) 1041, 1074
BbsI GAAGAC 1 cut(s) 1092
BbvI GCAGC 3 cut(s) 386, 811, 1119
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 657
BciT130I CCWGG 2 cut(s) 381, 425
BcoDI GTCTC 3 cut(s) 273, 1034, 1164
BfaI CTAG 2 cut(s) 195, 348
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 2 cut(s) 121, 179
BisI GCNGC 3 cut(s) 375, 800, 1133
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 3 cut(s) 376, 801, 1134
Bme1390I CCNGG 2 cut(s) 381, 425
Bme18I GGWCC 4 cut(s) 32, 329, 383, 598
BmeT110I CYCGRG 2 cut(s) 249, 1161
BmgT120I GGNCC 5 cut(s) 32, 329, 383, 598, 708
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 2 cut(s) 381, 425
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 722
BmuI ACTGGG 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 1092
BpmI CTGGAG 1 cut(s) 1226
Bpu10I CCTNAGC 6 cut(s) 864, 912, 990, 996, 1002, 1008
Bpu1102I GCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 902, 926
Bsa29I ATCGAT 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 224, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 482, 483
Bse1I ACTGG 3 cut(s) 169, 619, 1222
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 2 cut(s) 381, 425
BseCI ATCGAT 1 cut(s) 745
BseDI CCNNGG 2 cut(s) 224, 379
BseGI GGATG 3 cut(s) 781, 1042, 1072
BseLI CCNNNNNNNGG 3 cut(s) 62, 482, 483
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 9 cut(s) 443, 855, 903, 921, 963, 981, 987, 993, 999
BseNI ACTGG 3 cut(s) 169, 619, 1222
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 3 cut(s) 386, 811, 1119
BsgI GTGCAG 2 cut(s) 202, 818
BshFI GGCC 3 cut(s) 618, 709, 1196
BshVI ATCGAT 1 cut(s) 745
BsiHKCI CYCGRG 2 cut(s) 249, 1161
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 62, 482, 483
BsmAI GTCTC 3 cut(s) 273, 1034, 1164
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 3 cut(s) 618, 709, 1196
BsoBI CYCGRG 2 cut(s) 249, 1161
Bsp1286I GDGCHC 1 cut(s) 1150
Bsp143I GATC 1 cut(s) 143
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 1 cut(s) 711
BspANI GGCC 3 cut(s) 618, 709, 1196
BspCNI CTCAG 9 cut(s) 442, 856, 904, 922, 964, 982, 988, 994, 1000
BspDI ATCGAT 1 cut(s) 745
BspHI TCATGA 1 cut(s) 964
BspLI GGNNCC 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 2 cut(s) 121, 179
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 2 cut(s) 106, 678
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 3 cut(s) 169, 619, 1222
BssECI CCNNGG 2 cut(s) 224, 379
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 381, 425
Bst4CI ACNGT 3 cut(s) 508, 566, 665
Bst6I CTCTTC 4 cut(s) 106, 267, 522, 678
BstBAI YACGTR 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 707, 711
BstF5I GGATG 3 cut(s) 781, 1042, 1072
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 3 cut(s) 273, 1034, 1164
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 235, 374, 551
BstNI CCWGG 2 cut(s) 381, 425
BstNSI RCATGY 2 cut(s) 806, 1128
BstPAI GACNNNNGTC 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 379, 423
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 1150
BstV1I GCAGC 3 cut(s) 386, 811, 1119
BstV2I GAAGAC 1 cut(s) 1092
Bsu15I ATCGAT 1 cut(s) 745
BsuRI GGCC 3 cut(s) 618, 709, 1196
BsuTUI ATCGAT 1 cut(s) 745
BtsCI GGATG 3 cut(s) 781, 1042, 1072
BtsIMutI CAGTG 1 cut(s) 670
BveI ACCTGC 2 cut(s) 121, 179
Cac8I GCNNGC 2 cut(s) 707, 711
CaiI CAGNNNCTG 3 cut(s) 380, 863, 1052
CciI TCATGA 1 cut(s) 964
Cfr13I GGNCC 5 cut(s) 32, 329, 383, 598, 708
ClaI ATCGAT 1 cut(s) 745
CseI GACGC 1 cut(s) 735
Csp6I GTAC 2 cut(s) 902, 1050
CviAII CATG 3 cut(s) 803, 965, 1125
CviQI GTAC 2 cut(s) 902, 1050
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 4 cut(s) 106, 267, 522, 678
EarI CTCTTC 4 cut(s) 106, 267, 522, 678
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 4 cut(s) 32, 329, 383, 598
Eco57I CTGAAG 4 cut(s) 702, 969, 1029, 1074
Eco88I CYCGRG 2 cut(s) 249, 1161
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 379, 423
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 806, 968, 1128
FalI AAGNNNNNCTT 4 cut(s) 142, 174, 1083, 1115
FaqI GGGAC 1 cut(s) 369
FatI CATG 3 cut(s) 802, 964, 1124
FauI CCCGC 1 cut(s) 718
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 375, 800, 1133
FokI GGATG 3 cut(s) 788, 1049, 1079
Fsp4HI GCNGC 3 cut(s) 375, 800, 1133
FspBI CTAG 2 cut(s) 195, 348
GluI GCNGC 3 cut(s) 375, 800, 1133
GsuI CTGGAG 1 cut(s) 1226
HaeIII GGCC 3 cut(s) 618, 709, 1196
HgaI GACGC 1 cut(s) 735
Hin1II CATG 3 cut(s) 806, 968, 1128
HinfI GANTC 5 cut(s) 120, 302, 512, 653, 896
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 53, 1081
Hpy188I TCNGA 4 cut(s) 40, 307, 772, 853
Hpy188III TCNNGA 7 cut(s) 30, 215, 415, 437, 965, 1161, 1205
Hpy8I GTNNAC 2 cut(s) 53, 1081
Hpy99I CGWCG 1 cut(s) 729
HpyAV CCTTC 3 cut(s) 460, 664, 1186
HpyCH4III ACNGT 3 cut(s) 508, 566, 665
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 5 cut(s) 183, 374, 481, 799, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 374, 551
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 3 cut(s) 806, 968, 1128
Kzo9I GATC 1 cut(s) 143
LguI GCTCTTC 2 cut(s) 106, 678
LmnI GCTCC 1 cut(s) 1224
Lsp1109I GCAGC 3 cut(s) 386, 811, 1119
LweI GCATC 1 cut(s) 722
MaeI CTAG 2 cut(s) 195, 348
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 3 cut(s) 3, 242, 350
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 8 cut(s) 93, 284, 311, 470, 509, 695, 1097, 1201
MhlI GDGCHC 1 cut(s) 1150
MluCI AATT 6 cut(s) 657, 718, 790, 808, 832, 1139
MlyI GAGTC 1 cut(s) 905
MmeI TCCRAC 3 cut(s) 121, 556, 576
MnlI CCTC 9 cut(s) 129, 146, 249, 353, 706, 766, 1027, 1137, 1157
MroXI GAANNNNTTC 1 cut(s) 1175
MseI TTAA 3 cut(s) 453, 522, 660
MspR9I CCNGG 2 cut(s) 381, 425
MvaI CCWGG 2 cut(s) 381, 425
MwoI GCNNNNNNNGC 3 cut(s) 235, 374, 551
NdeII GATC 1 cut(s) 143
NlaIII CATG 3 cut(s) 806, 968, 1128
NlaIV GGNNCC 1 cut(s) 385
NmeAIII GCCGAG 2 cut(s) 979, 1222
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 2 cut(s) 806, 1128
PaeR7I CTCGAG 1 cut(s) 1161
PagI TCATGA 1 cut(s) 964
PaqCI CACCTGC 1 cut(s) 121
PciSI GCTCTTC 2 cut(s) 106, 678
PdmI GAANNNNTTC 1 cut(s) 1175
PfeI GAWTC 4 cut(s) 120, 302, 512, 653
PkrI GCNGC 3 cut(s) 376, 801, 1134
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
Ppu21I YACGTR 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 379, 423
PspGI CCWGG 2 cut(s) 379, 423
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 5 cut(s) 32, 329, 383, 598, 708
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 3 cut(s) 380, 863, 1052
RsaI GTAC 2 cut(s) 903, 1051
RsaNI GTAC 2 cut(s) 902, 1050
SapI GCTCTTC 2 cut(s) 106, 678
SaqAI TTAA 3 cut(s) 453, 522, 660
SatI GCNGC 3 cut(s) 375, 800, 1133
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 5 cut(s) 32, 329, 383, 598, 708
SchI GAGTC 1 cut(s) 905
ScrFI CCNGG 2 cut(s) 381, 425
SduI GDGCHC 1 cut(s) 1150
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 1161
SinI GGWCC 4 cut(s) 32, 329, 383, 598
SlaI CTCGAG 1 cut(s) 1161
SmlI CTYRAG 3 cut(s) 881, 905, 1161
SmoI CTYRAG 3 cut(s) 881, 905, 1161
Sse9I AATT 6 cut(s) 657, 718, 790, 808, 832, 1139
SsiI CCGC 1 cut(s) 711
SspMI CTAG 2 cut(s) 195, 348
StyD4I CCNGG 2 cut(s) 379, 423
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 508, 566, 665
TaiI ACGT 1 cut(s) 182
TaqI TCGA 3 cut(s) 724, 745, 1162
TasI AATT 6 cut(s) 657, 718, 790, 808, 832, 1139
TfiI GAWTC 4 cut(s) 120, 302, 512, 653
Tru1I TTAA 3 cut(s) 453, 522, 660
Tru9I TTAA 3 cut(s) 453, 522, 660
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 374, 799, 1132
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 5 cut(s) 5, 285, 911, 953, 1202
TspGWI ACGGA 1 cut(s) 1127
TspRI CASTG 1 cut(s) 670
VpaK11BI GGWCC 4 cut(s) 32, 329, 383, 598
XapI RAATTY 2 cut(s) 718, 808
XceI RCATGY 2 cut(s) 806, 1128
XhoI CTCGAG 1 cut(s) 1161
XmiI GTMKAC 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 1175
XspI CTAG 2 cut(s) 195, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.