Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007951

Physical Location & Seq

Genomic Coordinates Reverse (-)

19054212 .. 19055509

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTACAGGGCGTTCATATCATCGGTCATGGACCATCAGATGCCAAATGTCTTCCGTGTTCTGGAATTTCCGGAAGGGTAGCCCCTTTATATCCCTGCTCTTCTCGTTTCAACCATAAGTCCAAGTCACAGGTCAGTTATGGATCACCAAAAGGTGCTTACAAGGGGGTATCCTTTACGTGCAGAGCGAGTTCTGGTGGTCGTAATAGAAATCCAGAGTTTCCAAGGCAAAACAGACATGGGTACTCCCGGAGCAGGAATAGGAAAAGTGAAGAAAGAGATGGCTTTGATAACTTTGATGAATCTGATATGCTGTCTTCTAAAAATGGGCCATCGGTCTCCCTTTCAAGTAACACAAAGTTTGGGGCCACTGCATCCCCTGGACCTAGAGAAAAAGAGATTGTTGAGCTGTTCCGGAAGGTCCAGGCTCAACTTCGGGAGAGAAGTGCAGTTAAAGAAGAAAGGAAGGTTGAAGCTTCACAAGGGCATGGTAAAGAGAATGCGACTGTGGATTCCCTCCTCAACCTGTTAAGAAAGCACTCGGTTGAGCAATCAAAGAGAAACAGCAACAGTGGCAGCAGCAACAAGGACTTCACGTTGGACCAACCAGAAAAGAATCTCCTTTTGATTCAAATAACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

215

Amino Acids

23.63

Weight (kDa)

9.82

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT1G06190 AT2G31150
fragaria_vesca	FvH4_2g21350
malus_domestica	MD05G1196200.v1.1 MD10G1183500.v1.1
prunus_persica	Prupe.8G222600_v2.0.a1
pyrus_communis	pycom05g18320 pycom10g15850
rosa_chinensis	RchiOBHm_Chr6g0287941
rosa_laevigata	RLG00000012454
rosa_multiflora	Rmu_sc0000042.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180650 Rroxscaffold_7G00180890
rosa_rugosa	Rorug06G0193600
rosa_samantha	Rh6AG302800 Rh6BG309000 Rh6CG300700 Rh6CG316700 Rh6DG301500
rosa_wichuraiana	Rw6G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	71, 414
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	62, 255
AgsI	TTSAA	4 cut(s)	112, 348, 473, 632
AjnI	CCWGG	2 cut(s)	379, 423
AluBI	AGCT	2 cut(s)	409, 476
AluI	AGCT	2 cut(s)	409, 476
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	151
Aor13HI	TCCGGA	2 cut(s)	71, 414
AoxI	GGCC	2 cut(s)	329, 366
ApeKI	GCWGC	2 cut(s)	576, 579
ApoI	RAATTY	1 cut(s)	66
AspS9I	GGNCC	6 cut(s)	32, 329, 366, 383, 421, 601
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	138
AvaII	GGWCC	4 cut(s)	32, 383, 421, 601
BbsI	GAAGAC	2 cut(s)	44, 309
BbvI	GCAGC	2 cut(s)	588, 591
BccI	CCATC	3 cut(s)	43, 275, 340
BciT130I	CCWGG	2 cut(s)	381, 425
BciVI	GTATCC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	577, 580
BlsI	GCNGC	2 cut(s)	578, 581
Bme1390I	CCNGG	3 cut(s)	250, 381, 425
Bme18I	GGWCC	4 cut(s)	32, 383, 421, 601
BmgT120I	GGNCC	6 cut(s)	32, 329, 366, 383, 421, 601
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	3 cut(s)	250, 381, 425
BmsI	GCATC	2 cut(s)	31, 383
BpiI	GAAGAC	2 cut(s)	44, 309
BpuMI	CCSGG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	224, 379
BsaWI	WCCGGW	2 cut(s)	71, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 255
BseAI	TCCGGA	2 cut(s)	71, 414
BseBI	CCWGG	2 cut(s)	381, 425
BseDI	CCNNGG	2 cut(s)	224, 379
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	62, 255
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	588, 591
BsgI	GTGCAG	2 cut(s)	202, 468
BshFI	GGCC	2 cut(s)	331, 368
BsiSI	CCGG	3 cut(s)	72, 250, 415
BslI	CCNNNNNNNGG	2 cut(s)	62, 255
BsmAI	GTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	331, 368
Bso31I	GGTCTC	1 cut(s)	343
Bsp13I	TCCGGA	2 cut(s)	71, 414
Bsp143I	GATC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	331, 368
BspEI	TCCGGA	2 cut(s)	71, 414
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	224, 379
BssMI	GATC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	381, 425
Bst4CI	ACNGT	2 cut(s)	508, 572
Bst6I	CTCTTC	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	374
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	573
BstNI	CCWGG	2 cut(s)	381, 425
BstSCI	CCNGG	3 cut(s)	248, 379, 423
BstV1I	GCAGC	2 cut(s)	588, 591
BstV2I	GAAGAC	2 cut(s)	44, 309
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	331, 368
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 577
Cfr13I	GGNCC	6 cut(s)	32, 329, 366, 383, 421, 601
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	3 cut(s)	29, 239, 488
CviJI	RGCY	7 cut(s)	83, 285, 331, 368, 409, 428, 476
CviKI_1	RGCY	7 cut(s)	83, 285, 331, 368, 409, 428, 476
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	4 cut(s)	32, 383, 421, 601
EcoRII	CCWGG	2 cut(s)	379, 423
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	32, 242, 491
FaiI	YATR	8 cut(s)	18, 30, 91, 117, 141, 240, 311, 489
FatI	CATG	3 cut(s)	28, 238, 487
Fnu4HI	GCNGC	2 cut(s)	577, 580
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	577, 580
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	577, 580
HaeIII	GGCC	2 cut(s)	331, 368
HapII	CCGG	3 cut(s)	72, 250, 415
Hin1II	CATG	3 cut(s)	32, 242, 491
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	4 cut(s)	302, 512, 616, 628
HpaII	CCGG	3 cut(s)	72, 250, 415
HphI	GGTGA	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	40, 307
Hpy188III	TCNNGA	5 cut(s)	63, 72, 215, 415, 437
HpyAV	CCTTC	3 cut(s)	69, 412, 460
HpyCH4III	ACNGT	2 cut(s)	508, 572
HpyCH4IV	ACGT	2 cut(s)	179, 596
HpyCH4V	TGCA	3 cut(s)	183, 374, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	573
HpySE526I	ACGT	2 cut(s)	179, 596
Hsp92II	CATG	3 cut(s)	32, 242, 491
Kpn2I	TCCGGA	2 cut(s)	71, 414
Kzo9I	GATC	1 cut(s)	143
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	2 cut(s)	588, 591
LweI	GCATC	2 cut(s)	31, 383
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	2 cut(s)	179, 596
MaeIII	GTNAC	3 cut(s)	3, 126, 350
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	5 cut(s)	44, 93, 284, 309, 470
MluCI	AATT	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	2 cut(s)	527, 530
MroI	TCCGGA	2 cut(s)	71, 414
MseI	TTAA	2 cut(s)	453, 530
MspI	CCGG	3 cut(s)	72, 250, 415
MspR9I	CCNGG	3 cut(s)	250, 381, 425
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	2 cut(s)	381, 425
MwoI	GCNNNNNNNGC	1 cut(s)	573
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	32, 242, 491
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	4 cut(s)	302, 512, 616, 628
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	578, 581
Ppu21I	YACGTR	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	379, 423
PspGI	CCWGG	2 cut(s)	379, 423
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	6 cut(s)	32, 329, 366, 383, 421, 601
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	453, 530
SatI	GCNGC	2 cut(s)	577, 580
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	6 cut(s)	32, 329, 366, 383, 421, 601
ScrFI	CCNGG	3 cut(s)	250, 381, 425
SfaNI	GCATC	2 cut(s)	31, 383
SinI	GGWCC	4 cut(s)	32, 383, 421, 601
Sse9I	AATT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	248, 379, 423
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	508, 572
TaiI	ACGT	2 cut(s)	182, 599
TaqII	GACCGA	2 cut(s)	14, 325
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	4 cut(s)	302, 512, 616, 628
Tru1I	TTAA	2 cut(s)	453, 530
Tru9I	TTAA	2 cut(s)	453, 530
TscAI	CASTG	2 cut(s)	376, 577
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	2 cut(s)	576, 579
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	5, 315
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	376, 577
VpaK11BI	GGWCC	4 cut(s)	32, 383, 421, 601
XapI	RAATTY	1 cut(s)	66
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.